mRNA_Ecto-sp8_S_contig10676.1046.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A6H5JDH3_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH3_9PHAE) HSP 1 Score: 582 bits (1501), Expect = 1.050e-198 Identity = 354/401 (88.28%), Postives = 362/401 (90.27%), Query Frame = 1
Query: 1 GAGERASKLEEEMADAKTTAADTGARLKAKRKSLKESERRVRQASARLGGEDLDGPDGTVSGGSCSXXXXXXXXSADLPEASSFGPAVRQGASSAAITPATVAAAAGGVTSWEGTDDARGNDKENFPAQLSEAELLGNKHQLAAKQKLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQMP 1203
GAGERASKLEEE+ADAKTTAADTGARLKAKRKSLKESERRV QA+ARLGGEDL GPDGTVSGGSC+ SADLPEASSFGPAVRQGASSAAITP TVAAAAGGVT+WEG D+AR NDKENFPAQLSEAELLG KHQLAAKQKLLSTELRGLR QSGQ QQ XXXXXXXXXXXXXXXXXXXXX VAGSVDEVTV+KRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALC NKSADLVMAGPKLE+G+RLVVRNGNTQA AV VVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQ P
Sbjct: 292 GAGERASKLEEEIADAKTTAADTGARLKAKRKSLKESERRVCQAAARLGGEDLAGPDGTVSGGSCNGGGEGGG-SADLPEASSFGPAVRQGASSAAITPTTVAAAAGGVTNWEGIDEARSNDKENFPAQLSEAELLGKKHQLAAKQKLLSTELRGLRHQSGQHQQHXXXXXXXXXXXXXXXXXXXXX---VAGSVDEVTVSKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCHNKSADLVMAGPKLEDGIRLVVRNGNTQAVAAATITTTTPSS--AVPAVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQTP 686
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI) HSP 1 Score: 596 bits (1537), Expect = 6.620e-198 Identity = 384/401 (95.76%), Postives = 388/401 (96.76%), Query Frame = 1
Query: 16 ASKLEEEMADAKTTAADTGARLKAKRKSLKESERRVRQASARLGGEDLDGPDGTVSGGSCSXXXXXXXXSADLPEASSFGPAVRQGASSAAITPATVAAAAGGVTSWEGTDDARGNDKENFPAQLSEAELLGNKHQLAAKQKLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLENGLRLVVRNGNTQAXXXXXXXXXXXXXXX-----AVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQMP 1203
ASKLEEEMADAKTTAADTGARL+AKRKSLKESERR+ QA+ARLGGEDL GPDGTVSGGSCSXXXXXXXXSADLPEASSF PAVRQGASSAAITPA VAAAAGGVT WEGTDDARGNDKENFPAQLSEAELLG KHQLAAKQKLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLE+GLRLVVRNGNTQAXXXXXXXXXXXXXXX AVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCV VEMRDGVSRVQ P
Sbjct: 767 ASKLEEEMADAKTTAADTGARLEAKRKSLKESERRMHQAAARLGGEDLAGPDGTVSGGSCSXXXXXXXXSADLPEASSFDPAVRQGASSAAITPAAVAAAAGGVTGWEGTDDARGNDKENFPAQLSEAELLGKKHQLAAKQKLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLEDGLRLVVRNGNTQAXXXXXXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVPVEMRDGVSRVQTP 1167
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A836CK59_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA) HSP 1 Score: 127 bits (320), Expect = 7.270e-27 Identity = 89/230 (38.70%), Postives = 108/230 (46.96%), Query Frame = 1
Query: 571 VAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLENGLRLVVRNGNTQAXXXXXXXXXXXXXXXA----------------------VAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRV 1194
+ VD V RR+ V LKQQL V E LE G + +G M AN ACYA+VRGE R L AL K+ADL+ + + L V N + + ++ +ELSGGQQ+LLGLA V ALS+Y A PL LLDEVDAALD NQ A L+ FR Q LCVSHHA + V V M G SR+
Sbjct: 1072 LGAGVDATQVRLRRSTVETLKQQLNMVREAMSHLEGGAILIQGHMEAANAACYAAVRGEFRRLLSALMPTKAADLLRDAAR--HALAFTVTNLTSSSSAQRDAPAAVHDAMDISDDEXXXXXXXXXXXXXXXXXXXXXXXXKSARELSGGQQSLLGLAFVFALSAYHAAPLYLLDEVDAALDAANQRRVAALLPRAFRGAQVLCVSHHAATQALATRRVRVAMEKGSSRI 1299
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: F0WC70_9STRA (Chromosome segregation protein Smc putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WC70_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.670e-16 Identity = 56/182 (30.77%), Postives = 93/182 (51.10%), Query Frame = 1
Query: 583 VDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHH 1128
V ++ +++ + + Q +L R LE GV + + + N+ + S+ + +F +K A + + G K+E G+ V++ ++ + ++ +E+SGGQ ALLG++ + AL+S A PLC+LDE+DAALDE NQA A L A F Q +CVSHH
Sbjct: 307 VSNGSLMQKQQALSEFESQAAKILIAVRNLEEGVRSTDEKTTRVNQLAFESIARRFQQIFEQAIPSKRAIMALRGEKVELGIEFRVQDQSSN---------------------LTKSTKEMSGGQLALLGMSYIFALASCSASPLCILDEIDAALDEQNQAIIASLAASNFSSIQVICVSHH 467
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A024GMI1_9STRA (SMC_N domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMI1_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 3.910e-13 Identity = 57/197 (28.93%), Postives = 92/197 (46.70%), Query Frame = 1
Query: 604 KRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRV 1194
+++ + + Q V LE G+ + + N+ + S+ + +F +K A L ++ K+E + + +T + + +A LSGGQ ALLG++ + AL+S A PLC+LDE+DAALDE NQ A L A FR Q +CVSHH H ++ + V +D S +
Sbjct: 1115 QKQKALSEFQTQAAKVAIAVTNLEDGIRTTDEQTTWVNQLAFKSIANRFQHIFEQAIPSKRAFLELSDEKVEVSVEDWM---DTHETLRILFKFGVEFKVQDRSHSLIKATNTLSGGQLALLGMSYIFALASCSAIPLCILDEIDAALDEQNQENVAALAASNFRSIQVICVSHHKAMHNKAQQLIQVRKKDTTSAI 1308
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A4V0X8L4_9BURK (Chromosome partition protein Smc n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4V0X8L4_9BURK) HSP 1 Score: 72.8 bits (177), Expect = 1.460e-9 Identity = 61/207 (29.47%), Postives = 94/207 (45.41%), Query Frame = 1
Query: 580 SVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPK-LENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRD-GVSRV 1194
++DE+T + R + L Q + E LE + +G E + SV F L +A L + G + L++G++++ + G + Q LSGG++AL +ALV A+ P CLLDEVDA LD++N ARLVA RE Q L +SH+ + + V M++ GVSR+
Sbjct: 974 ALDELTAARERKQ--FLDSQSADLNEAMSTLEDAIRKIDGETRELLSGTFNSVNEHFGKTFPELFGGGNARLAITGDEILDSGVQVIAQP----------------------PGKKNQTIQLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDSNTERYARLVARMSRETQFLFISHNKIAMEMAEQLIGVTMQEQGVSRI 1156
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A1P8JW63_9BURK (Chromosome partition protein Smc n=1 Tax=Rhodoferax koreense TaxID=1842727 RepID=A0A1P8JW63_9BURK) HSP 1 Score: 72.8 bits (177), Expect = 1.460e-9 Identity = 59/207 (28.50%), Postives = 96/207 (46.38%), Query Frame = 1
Query: 580 SVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPK-LENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRD-GVSRV 1194
++DE+TV + R + L Q ++E LE + +G E + +V +F L +A LV+ G + L++G+++V + G + LSGG++AL +ALV A+ P CLLDEVDA LD+ N A+LVA ++ Q L +SH+ + + V M++ GVSR+
Sbjct: 978 ALDELTVARERKQ--FLDAQTADLVEAMTTLEDAIRKIDGETRELLSGTFNTVNAHFGKMFPELFGGGNARLVITGDEILDSGVQVVAQP----------------------PGKKNQTIHLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVASMSKQTQFLFISHNKIAMEMAEQLIGVTMQEQGVSRI 1160
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A2M7FVM8_9BURK (Chromosome partition protein Smc n=2 Tax=unclassified Comamonadaceae TaxID=83494 RepID=A0A2M7FVM8_9BURK) HSP 1 Score: 72.4 bits (176), Expect = 1.930e-9 Identity = 58/207 (28.02%), Postives = 95/207 (45.89%), Query Frame = 1
Query: 580 SVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPK-LENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRD-GVSRV 1194
++DE+ + R G L Q ++E LE + +G E + +V G +F L +A LV+ G + L++G++++ + G ++ LSGG++AL +ALV A+ P CLLDEVDA LD+ N A+LV+ E Q L +SH+ + + V M++ GVSR+
Sbjct: 974 ALDELAAARERK--GFLDAQSADLVEAMTTLEDAIKKIDGETRELLSGTFNTVNGHFGKMFPELFGGGNARLVITGEEILDSGVQVIAQP----------------------PGKKNQSIALLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVSRMSHETQFLFISHNKIAMEMAQQLIGVTMQEQGVSRI 1156
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: UPI0019BCDF56 (AAA family ATPase n=1 Tax=Ramlibacter sp. TaxID=1917967 RepID=UPI0019BCDF56) HSP 1 Score: 69.3 bits (168), Expect = 3.180e-9 Identity = 59/207 (28.50%), Postives = 93/207 (44.93%), Query Frame = 1
Query: 580 SVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPK-LENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRD-GVSRV 1194
++DE+T + R + L Q + E LE + +G E + V +F L +A LVM G + L++G++++ + G + LSGG++AL +ALV A+ P CLLDEVDA LD+ N A+LV+ RE Q L +SH+ + + V M++ GVSR+
Sbjct: 95 ALDELTTARERKQ--FLDSQSADLNEAMTTLEDAIRKIDGETRELLAGTFNIVNEHFGKMFPELFGGGNAKLVMTGDEILDSGVQVMAQP----------------------PGKKNQTIHLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVSSMSRETQFLFISHNKIAMEMAEQLIGVTMQEQGVSRI 277
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A6H9Y306_9PROT (Chromosome partition protein Smc n=1 Tax=Betaproteobacteria bacterium SCN2 TaxID=2651628 RepID=A0A6H9Y306_9PROT) HSP 1 Score: 71.2 bits (173), Expect = 4.390e-9 Identity = 60/207 (28.99%), Postives = 92/207 (44.44%), Query Frame = 1
Query: 580 SVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKL-ENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRD-GVSRV 1194
++DE+T + R L Q +LE T LEA + + E +A + +V L LF A+LV+ G +L + G++++ + G + LSGG++AL L+LV AL P CLLDEVDA LD+ N + +V E Q L ++H+ + H V M + GVSR+
Sbjct: 970 ALDELTEAQERGTY--LANQHADLLEATNTLEAAIKKIDQETRELLKATFDTVNANLGELFPQFFGGGRAELVLTGEELLDAGVQIIAQP----------------------PGKKNASIHLLSGGEKALTALSLVFALFKLNPAPFCLLDEVDAPLDDANTVRYSEMVKRMSSETQFLFITHNRITMEMAQHLAGVTMNEPGVSRI 1152 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10676.1046.1 >prot_Ecto-sp8_S_contig10676.1046.1 ID=prot_Ecto-sp8_S_contig10676.1046.1|Name=mRNA_Ecto-sp8_S_contig10676.1046.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=390bp MADAKTTAADTGARLKAKRKSLKESERRVRQASARLGGEDLDGPDGTVSGback to top mRNA from alignment at Ecto-sp8_S_contig10676:1969..6750- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10676.1046.1 ID=mRNA_Ecto-sp8_S_contig10676.1046.1|Name=mRNA_Ecto-sp8_S_contig10676.1046.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4782bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10676:1969..6750- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10676:1969..6750- >mRNA_Ecto-sp8_S_contig10676.1046.1 ID=mRNA_Ecto-sp8_S_contig10676.1046.1|Name=mRNA_Ecto-sp8_S_contig10676.1046.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1170bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10676:1969..6750- (Ectocarpus species8 EcLAC_412)back to top |