mRNA_Ecto-sp8_S_contig10676.1046.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10676.1046.1
Unique NamemRNA_Ecto-sp8_S_contig10676.1046.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A6H5JDH3_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH3_9PHAE)

HSP 1 Score: 582 bits (1501), Expect = 1.050e-198
Identity = 354/401 (88.28%), Postives = 362/401 (90.27%), Query Frame = 1
Query:    1 GAGERASKLEEEMADAKTTAADTGARLKAKRKSLKESERRVRQASARLGGEDLDGPDGTVSGGSCSXXXXXXXXSADLPEASSFGPAVRQGASSAAITPATVAAAAGGVTSWEGTDDARGNDKENFPAQLSEAELLGNKHQLAAKQKLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQMP 1203
            GAGERASKLEEE+ADAKTTAADTGARLKAKRKSLKESERRV QA+ARLGGEDL GPDGTVSGGSC+        SADLPEASSFGPAVRQGASSAAITP TVAAAAGGVT+WEG D+AR NDKENFPAQLSEAELLG KHQLAAKQKLLSTELRGLR QSGQ QQ XXXXXXXXXXXXXXXXXXXXX   VAGSVDEVTV+KRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALC NKSADLVMAGPKLE+G+RLVVRNGNTQA               AV  VVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQ P
Sbjct:  292 GAGERASKLEEEIADAKTTAADTGARLKAKRKSLKESERRVCQAAARLGGEDLAGPDGTVSGGSCNGGGEGGG-SADLPEASSFGPAVRQGASSAAITPTTVAAAAGGVTNWEGIDEARSNDKENFPAQLSEAELLGKKHQLAAKQKLLSTELRGLRHQSGQHQQHXXXXXXXXXXXXXXXXXXXXX---VAGSVDEVTVSKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCHNKSADLVMAGPKLEDGIRLVVRNGNTQAVAAATITTTTPSS--AVPAVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQTP 686          
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 596 bits (1537), Expect = 6.620e-198
Identity = 384/401 (95.76%), Postives = 388/401 (96.76%), Query Frame = 1
Query:   16 ASKLEEEMADAKTTAADTGARLKAKRKSLKESERRVRQASARLGGEDLDGPDGTVSGGSCSXXXXXXXXSADLPEASSFGPAVRQGASSAAITPATVAAAAGGVTSWEGTDDARGNDKENFPAQLSEAELLGNKHQLAAKQKLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLENGLRLVVRNGNTQAXXXXXXXXXXXXXXX-----AVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQMP 1203
            ASKLEEEMADAKTTAADTGARL+AKRKSLKESERR+ QA+ARLGGEDL GPDGTVSGGSCSXXXXXXXXSADLPEASSF PAVRQGASSAAITPA VAAAAGGVT WEGTDDARGNDKENFPAQLSEAELLG KHQLAAKQKLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLE+GLRLVVRNGNTQAXXXXXXXXXXXXXXX     AVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCV VEMRDGVSRVQ P
Sbjct:  767 ASKLEEEMADAKTTAADTGARLEAKRKSLKESERRMHQAAARLGGEDLAGPDGTVSGGSCSXXXXXXXXSADLPEASSFDPAVRQGASSAAITPAAVAAAAGGVTGWEGTDDARGNDKENFPAQLSEAELLGKKHQLAAKQKLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLEDGLRLVVRNGNTQAXXXXXXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVPVEMRDGVSRVQTP 1167          
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A836CK59_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA)

HSP 1 Score: 127 bits (320), Expect = 7.270e-27
Identity = 89/230 (38.70%), Postives = 108/230 (46.96%), Query Frame = 1
Query:  571 VAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLENGLRLVVRNGNTQAXXXXXXXXXXXXXXXA----------------------VAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRV 1194
            +   VD   V  RR+ V  LKQQL  V E    LE G +  +G M  AN ACYA+VRGE R L  AL   K+ADL+    +  + L   V N  + +                                            ++ +ELSGGQQ+LLGLA V ALS+Y A PL LLDEVDAALD  NQ   A L+   FR  Q LCVSHHA     +   V V M  G SR+
Sbjct: 1072 LGAGVDATQVRLRRSTVETLKQQLNMVREAMSHLEGGAILIQGHMEAANAACYAAVRGEFRRLLSALMPTKAADLLRDAAR--HALAFTVTNLTSSSSAQRDAPAAVHDAMDISDDEXXXXXXXXXXXXXXXXXXXXXXXXKSARELSGGQQSLLGLAFVFALSAYHAAPLYLLDEVDAALDAANQRRVAALLPRAFRGAQVLCVSHHAATQALATRRVRVAMEKGSSRI 1299          
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: F0WC70_9STRA (Chromosome segregation protein Smc putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WC70_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.670e-16
Identity = 56/182 (30.77%), Postives = 93/182 (51.10%), Query Frame = 1
Query:  583 VDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHH 1128
            V   ++ +++  +   + Q   +L   R LE GV + + +    N+  + S+    + +F     +K A + + G K+E G+   V++ ++                      + ++ +E+SGGQ ALLG++ + AL+S  A PLC+LDE+DAALDE NQA  A L A  F   Q +CVSHH
Sbjct:  307 VSNGSLMQKQQALSEFESQAAKILIAVRNLEEGVRSTDEKTTRVNQLAFESIARRFQQIFEQAIPSKRAIMALRGEKVELGIEFRVQDQSSN---------------------LTKSTKEMSGGQLALLGMSYIFALASCSASPLCILDEIDAALDEQNQAIIASLAASNFSSIQVICVSHH 467          
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A024GMI1_9STRA (SMC_N domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMI1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.910e-13
Identity = 57/197 (28.93%), Postives = 92/197 (46.70%), Query Frame = 1
Query:  604 KRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRV 1194
            +++  +   + Q   V      LE G+   + +    N+  + S+    + +F     +K A L ++  K+E  +   +   +T                   +  + +A   LSGGQ ALLG++ + AL+S  A PLC+LDE+DAALDE NQ   A L A  FR  Q +CVSHH   H ++   + V  +D  S +
Sbjct: 1115 QKQKALSEFQTQAAKVAIAVTNLEDGIRTTDEQTTWVNQLAFKSIANRFQHIFEQAIPSKRAFLELSDEKVEVSVEDWM---DTHETLRILFKFGVEFKVQDRSHSLIKATNTLSGGQLALLGMSYIFALASCSAIPLCILDEIDAALDEQNQENVAALAASNFRSIQVICVSHHKAMHNKAQQLIQVRKKDTTSAI 1308          
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A4V0X8L4_9BURK (Chromosome partition protein Smc n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4V0X8L4_9BURK)

HSP 1 Score: 72.8 bits (177), Expect = 1.460e-9
Identity = 61/207 (29.47%), Postives = 94/207 (45.41%), Query Frame = 1
Query:  580 SVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPK-LENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRD-GVSRV 1194
            ++DE+T  + R +   L  Q   + E    LE  +   +G   E     + SV       F  L    +A L + G + L++G++++ +                        G   +  Q LSGG++AL  +ALV A+      P CLLDEVDA LD++N    ARLVA   RE Q L +SH+      +   + V M++ GVSR+
Sbjct:  974 ALDELTAARERKQ--FLDSQSADLNEAMSTLEDAIRKIDGETRELLSGTFNSVNEHFGKTFPELFGGGNARLAITGDEILDSGVQVIAQP----------------------PGKKNQTIQLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDSNTERYARLVARMSRETQFLFISHNKIAMEMAEQLIGVTMQEQGVSRI 1156          
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A1P8JW63_9BURK (Chromosome partition protein Smc n=1 Tax=Rhodoferax koreense TaxID=1842727 RepID=A0A1P8JW63_9BURK)

HSP 1 Score: 72.8 bits (177), Expect = 1.460e-9
Identity = 59/207 (28.50%), Postives = 96/207 (46.38%), Query Frame = 1
Query:  580 SVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPK-LENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRD-GVSRV 1194
            ++DE+TV + R +   L  Q   ++E    LE  +   +G   E     + +V      +F  L    +A LV+ G + L++G+++V +                        G   +    LSGG++AL  +ALV A+      P CLLDEVDA LD+ N    A+LVA   ++ Q L +SH+      +   + V M++ GVSR+
Sbjct:  978 ALDELTVARERKQ--FLDAQTADLVEAMTTLEDAIRKIDGETRELLSGTFNTVNAHFGKMFPELFGGGNARLVITGDEILDSGVQVVAQP----------------------PGKKNQTIHLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVASMSKQTQFLFISHNKIAMEMAEQLIGVTMQEQGVSRI 1160          
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A2M7FVM8_9BURK (Chromosome partition protein Smc n=2 Tax=unclassified Comamonadaceae TaxID=83494 RepID=A0A2M7FVM8_9BURK)

HSP 1 Score: 72.4 bits (176), Expect = 1.930e-9
Identity = 58/207 (28.02%), Postives = 95/207 (45.89%), Query Frame = 1
Query:  580 SVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPK-LENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRD-GVSRV 1194
            ++DE+   + R   G L  Q   ++E    LE  +   +G   E     + +V G    +F  L    +A LV+ G + L++G++++ +                        G   ++   LSGG++AL  +ALV A+      P CLLDEVDA LD+ N    A+LV+    E Q L +SH+      +   + V M++ GVSR+
Sbjct:  974 ALDELAAARERK--GFLDAQSADLVEAMTTLEDAIKKIDGETRELLSGTFNTVNGHFGKMFPELFGGGNARLVITGEEILDSGVQVIAQP----------------------PGKKNQSIALLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVSRMSHETQFLFISHNKIAMEMAQQLIGVTMQEQGVSRI 1156          
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: UPI0019BCDF56 (AAA family ATPase n=1 Tax=Ramlibacter sp. TaxID=1917967 RepID=UPI0019BCDF56)

HSP 1 Score: 69.3 bits (168), Expect = 3.180e-9
Identity = 59/207 (28.50%), Postives = 93/207 (44.93%), Query Frame = 1
Query:  580 SVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPK-LENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRD-GVSRV 1194
            ++DE+T  + R +   L  Q   + E    LE  +   +G   E     +  V      +F  L    +A LVM G + L++G++++ +                        G   +    LSGG++AL  +ALV A+      P CLLDEVDA LD+ N    A+LV+   RE Q L +SH+      +   + V M++ GVSR+
Sbjct:   95 ALDELTTARERKQ--FLDSQSADLNEAMTTLEDAIRKIDGETRELLAGTFNIVNEHFGKMFPELFGGGNAKLVMTGDEILDSGVQVMAQP----------------------PGKKNQTIHLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVSSMSRETQFLFISHNKIAMEMAEQLIGVTMQEQGVSRI 277          
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Match: A0A6H9Y306_9PROT (Chromosome partition protein Smc n=1 Tax=Betaproteobacteria bacterium SCN2 TaxID=2651628 RepID=A0A6H9Y306_9PROT)

HSP 1 Score: 71.2 bits (173), Expect = 4.390e-9
Identity = 60/207 (28.99%), Postives = 92/207 (44.44%), Query Frame = 1
Query:  580 SVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKL-ENGLRLVVRNGNTQAXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRD-GVSRV 1194
            ++DE+T  + R     L  Q   +LE T  LEA +   +    E  +A + +V   L  LF        A+LV+ G +L + G++++ +                        G    +   LSGG++AL  L+LV AL      P CLLDEVDA LD+ N    + +V     E Q L ++H+      + H   V M + GVSR+
Sbjct:  970 ALDELTEAQERGTY--LANQHADLLEATNTLEAAIKKIDQETRELLKATFDTVNANLGELFPQFFGGGRAELVLTGEELLDAGVQIIAQP----------------------PGKKNASIHLLSGGEKALTALSLVFALFKLNPAPFCLLDEVDAPLDDANTVRYSEMVKRMSSETQFLFITHNRITMEMAQHLAGVTMNEPGVSRI 1152          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10676.1046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDH3_9PHAE1.050e-19888.28SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FQC9_ECTSI6.620e-19895.76SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CK59_9STRA7.270e-2738.70P-loop containing nucleoside triphosphate hydrolas... [more]
F0WC70_9STRA1.670e-1630.77Chromosome segregation protein Smc putative n=1 Ta... [more]
A0A024GMI1_9STRA3.910e-1328.93SMC_N domain-containing protein n=1 Tax=Albugo can... [more]
A0A4V0X8L4_9BURK1.460e-929.47Chromosome partition protein Smc n=1 Tax=Comamonad... [more]
A0A1P8JW63_9BURK1.460e-928.50Chromosome partition protein Smc n=1 Tax=Rhodofera... [more]
A0A2M7FVM8_9BURK1.930e-928.02Chromosome partition protein Smc n=2 Tax=unclassif... [more]
UPI0019BCDF563.180e-928.50AAA family ATPase n=1 Tax=Ramlibacter sp. TaxID=19... [more]
A0A6H9Y306_9PROT4.390e-928.99Chromosome partition protein Smc n=1 Tax=Betaprote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10676contigEcto-sp8_S_contig10676:1969..6750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score588.2
Seed ortholog evalue2.8e-165
Seed eggNOG ortholog2880.D7FQC9
Model size1855
KEGG koko:K06674
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0008152,GO:0008278,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030892,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1903047,GO:1990837
Exons8
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0933@2759
Cds size1170
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10676.1046.1prot_Ecto-sp8_S_contig10676.1046.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10676 2618..6714 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143163.7338936-UTR-Ecto-sp8_S_contig10676:1968..26171681143163.7338936-UTR-Ecto-sp8_S_contig10676:1968..2617Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10676 1969..2617 -
1681143163.8481395-UTR-Ecto-sp8_S_contig10676:6714..67501681143163.8481395-UTR-Ecto-sp8_S_contig10676:6714..6750Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10676 6715..6750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143163.7467313-CDS-Ecto-sp8_S_contig10676:2617..27611681143163.7467313-CDS-Ecto-sp8_S_contig10676:2617..2761Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10676 2618..2761 -
1681143163.7644544-CDS-Ecto-sp8_S_contig10676:3287..35361681143163.7644544-CDS-Ecto-sp8_S_contig10676:3287..3536Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10676 3288..3536 -
1681143163.7870362-CDS-Ecto-sp8_S_contig10676:3849..39651681143163.7870362-CDS-Ecto-sp8_S_contig10676:3849..3965Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10676 3850..3965 -
1681143163.8013852-CDS-Ecto-sp8_S_contig10676:4459..45381681143163.8013852-CDS-Ecto-sp8_S_contig10676:4459..4538Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10676 4460..4538 -
1681143163.8141296-CDS-Ecto-sp8_S_contig10676:4808..49851681143163.8141296-CDS-Ecto-sp8_S_contig10676:4808..4985Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10676 4809..4985 -
1681143163.8232186-CDS-Ecto-sp8_S_contig10676:5488..55571681143163.8232186-CDS-Ecto-sp8_S_contig10676:5488..5557Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10676 5489..5557 -
1681143163.83109-CDS-Ecto-sp8_S_contig10676:5857..61581681143163.83109-CDS-Ecto-sp8_S_contig10676:5857..6158Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10676 5858..6158 -
1681143163.8393-CDS-Ecto-sp8_S_contig10676:6679..67141681143163.8393-CDS-Ecto-sp8_S_contig10676:6679..6714Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10676 6680..6714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10676.1046.1

>prot_Ecto-sp8_S_contig10676.1046.1 ID=prot_Ecto-sp8_S_contig10676.1046.1|Name=mRNA_Ecto-sp8_S_contig10676.1046.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=390bp
MADAKTTAADTGARLKAKRKSLKESERRVRQASARLGGEDLDGPDGTVSG
GSCSGGGGGGGGSADLPEASSFGPAVRQGASSAAITPATVAAAAGGVTSW
EGTDDARGNDKENFPAQLSEAELLGNKHQLAAKQKLLSTELRGLRRQSGQ
RQQHQHEEEGRPVSGSGAAVAAAAAAVVVAGSVDEVTVTKRRAKVGMLKQ
QLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKS
ADLVMAGPKLENGLRLVVRNGNTQAAAAAAAATTTTTPSSAVAGVVERAP
QELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVA
LTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQMP*
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mRNA from alignment at Ecto-sp8_S_contig10676:1969..6750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10676.1046.1 ID=mRNA_Ecto-sp8_S_contig10676.1046.1|Name=mRNA_Ecto-sp8_S_contig10676.1046.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4782bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10676:1969..6750- (Ectocarpus species8 EcLAC_412)
GGAGCCGGAGAGAGGGCCTCCAAGTTGGAGGAAGAGATGGCTGACGCCAA GACGACTGCAGCAGACACGGGGTGTGTGGGGTGTCGTGGATTGGTGTTAA GGAGGGGGGGGGGGGGGATGACAGGTTTCTCAACCGAGTTTGAGTGTAAG CACCATATCAGTATGTAGTGCCGGGGGACGGAGTTCTAGGGCGGATTGTT TGTGTGTGTGTGATTGTGCGAGGTTGCGTGTGTTGCGGTAGGGTGCTATG TACTCACCGGTGCTGATTCAGCGAGTTTGCTACCCCGGGTGCACACCCTG TGCGTTTGTCGAGTGGAGCAGTTGGCTTGTGAAGTTGCGCAGTTGGTGCG AGGTTGCTCTCTCTCTTTCTCTCTTTCTCTCTTTCTCTTTCTCTTTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTGCACATCGGTGTTATTC TTCTCTCTGTTTCTTTTGCTGGGATTTTTCATATGTTACCACATCGTGTA GAGGGTGGTTCTCACAAACGTGTCCAATCGCTTCGTGTGCATGCACGCAC ACACCTGCTTATCTCCCTCCAACGTGCGGGCGGTGTGTCCAGGGCCCGCC TGAAGGCCAAGCGCAAGAGCTTGAAGGAGTCGGAGCGCCGCGTGCGCCAG GCATCAGCGAGACTGGGAGGAGAGGACCTTGACGGACCGGACGGCACCGT CAGCGGCGGCAGTTGTAGCGGCGGCGGCGGCGGCGGCGGCGGCAGTGCCG ACCTCCCCGAAGCGTCGTCTTTTGGCCCCGCAGTGAGGCAAGGGGCGTCG TCAGCGGCGATTACTCCGGCCACGGTGGCGGCGGCAGCAGGAGGGGTGAC GAGCTGGGAGGGCACCGACGACGCGCGGGGCAATGACAAGGAGGTAGGTA ATGTTCAAATGTATGGTCAACTTTCGGTCTCCGCGCCATACCCACGCAAG ATATCTCCGCCTTTGTCTGTAGTTCTGTTGCTGGATAGTTGGACACCATA ATTCGGTGCCACCGGATGTTGTGTACTTGTTTTCCCTCTCTTCAGCCCGA ACGCGCACGAACTAAATACTTGATTCAGGCGCCGCATAAGCAGCGAAACC ACACAAAACCGCCTCTTGACGTTCTAGCGATCCTCATTGCCCCCCCTCCC CTAACGACATGTCTTTCGATATCGCACCATTTTTCCTCTGAAGAATTTTC CGGCCCAGCTGTCCGAGGCGGAGCTGTTAGGCAACAAGCACCAACTAGCG GCGAAGCAAAAGGTGTGGGCGTGTGTGGGCGTGTGGCAAAGTCGGGGCTA AACGCCCGAAATGCACGTTCTGACTATGCTTTGCGTTCATCGTCAGTCTT CAGGTTCGTGTGGGGGAGAGAAAGGACGGGGGGGGGGGGGAGAGGGAGAG GTATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAG ACAGACAGATAGAGAGAGACAGAGAGAGGGAACGAGAATCACACAGAGGG CAACACGATGAACGAAATACAATGTTTACGGGAACGATAGAATACCAAGC GTTCGCGGCGATGATACCCAAGTAGAAGGAGAGGAAGAAGACTACCTACC GCGGTCGTCACGTGCTGACCAGAAAACCTCTTCTTGGCGGCCGTGATCGA CCGAACACCACGTCGTCCATGCCCTGCTTCTGTTTCCCTTCTCATGTACC CCAATCCCCGACCTCCCCTGATTTCCTCATTTCCCTGCCTGCCTCCTCCG TCTGCCTGACCCCAGCTGCTCTCAACCGAGCTGAGAGGCCTCCGTCGCCA GTCGGGCCAACGCCAGCAGCACCAGCATGAGGAGGAGGGGCGTCCGGTGA GCGGGAGCGGGGCCGCGGTGGCGGCGGCGGCGGCGGCGGTTGTGGTGGCC GGCAGCGTGGACGAGGTCACCGTGACGAAGAGGAGGGCCAAGGTGAGAAG GAAGGGGCGGGAGAAGAGGCAAGGCTAATCCCCGACAACACGGACACATG AAAGTAAAAGACCAGACTACCAGGCATTTTCGGGGGGGATAATTACCCCC GCCACGCAAACGCTCGCTCGTGCGATAGAGGTATGCGCTCTGGACAGACG TTGTTCAGAAACTAACTAGAACGAACCCTTTAACGTCTGTTTCTGTTTGC GTTTCTGTCTGCTCTTGCCGTGTCTGCCTGTCTGTCTGTCTGCCCGTCTT TGGCCCGTGGAGGTCGGCATGTTGAAGCAACAACTGAGGAGCGTTCTGGA AGGCACGCGTCAGCTAGAGGCAGGAGTGGTCGCTTGCGAAGGTGCTGAAC TCGAAAATCTTGTCGTGTGTGGATGCAGGCCGCCAATTCTCACCGCTTGA CTTACTGTACAACAGACAGACGTCGTGCGTACAATGCATCCACGGGAATG CTGTGACCTTGAGACCTCTGACGTAGAGACGTCGGCAGCCACAACAAGAA GGACGTCGAGCCCGACCGCCAAATTCTTTCGTGGTTTCATGCCGTTCTCT CTATCGTGTGGCAACAGGGACCCGCGCGTATTCCCTTAAACGCGACGCTG CAACAGCAGCGCTTTCGTCAAGTCTCCTTCTTCCGGATGGATTATGTCCC CAACGGATGGATGATGATGTCATCATGTTATCACCGTCCAAGGGAAATAG ACTCCTTTCTCACACCTGACCATCATATATTACCCCCACTCATTGCTGTC ACCTCAGTGTATCCCTCCCAAACCCTAACGTACTCCCCGGGTCCCCGAAC ACGGCGCAATGCGGTCTTGTCTGTCCTTGCGGCAGGCCGCATGCACGAAG CAAACGAGGCTTGCTACGCTTCCGTTCGGGGGGAGCTACGGTCCCTGTTC GGCGCGCTCTGCCGCAACAAGAGCGCCGATCTCGTCATGGCCGGGCCGAA GGTGCGCGGCTCTTATCTGTCGTGGTGTGGTTTACACAGTGCCGAGGCGT CATGCGGGGGGGGGTGCGGCGCTGGGGCGGCGCGGTGAATGGGTCTGTCT GCTCGTCGTTTCTGTGTCACCTAAGAGGCGCACGAATCGTGAGGCTTTGG ACGGCTGGCTGGCTGGCTGGCTACAGCAGGACCGCACTCGAAGCGGTAGC CCGCGCCCTTGTTTCTGTCACACAGCAGTGGTTTCCGCTCTTTGCTGCCT AGTCTTTTTTTCATTCTTCTGTCCCCATCACTGGTGTTGTTGTTCGCTTT CTACCCCAAAAAAGCTCGAGAACGGGTTACGTCTAGTGGTCCGGAACGGC AACACCCAGGCAGCCGCCGCCGCCGCCGCCGCCACTACCACCACAACCCC GTCATCGGCGGTGGCGGGTGTGGTAGAGCGTGCCCCACAGGAGTTGAGCG GAGGCCAGCAGGCGTTGCTGGGGCTGGCGCTCGTGCTGGCCCTGTCGTCG TATCAGGCGCCGCCGCTGTGCCTCCTCGACGAGGTGGACGCCGCCTTGGA CGAGACCAATCAGGTGAGTGAAGGGGGCGGCAGGTCCACTACGGCGACGA CTACAGCTAGAAAAGAAGCAGGGTACCCGGAAGAAAGTAGGGAATTGTAG ATAGCTTTGACGACATCGGCGTGTGCATCGGTGTAGCCAGTGTGGCTGAA GACCTTGAGAGCCAGCCAGCCCCCCACCCCCGGACACAGCTGTCATCTGT CTGTATGCAAGTAAGTAAGCACCAGATGCCGAACACCCTTGGCAGGATGC AGCGCACCCTCCATGCGACTTGCCGAATACCTCACGGCGCTTCGCGCTTG GTGATGTGCTCGGCTGGTCGGGTGAAAACCCGACGTGCTTCGTCCCGGCT TTGTAGGGATGGATGCGACCTCAATGGTCTAACGACAACGGCAGAGTGCA CCGCTATTAGTACCCGCCCCCTCCCCGCCCCCGGGTGTTGCGTATAGGTG TGCCTGACATGTCAAGCATCGTCGGAATTTTGTAGAGTAATGGAGCCTTG GTTGCCTCCATGCCCTTTGCCTCATTGTCCGCACAACAGGCGGCCGCGGC GCGCCTGGTGGCGCTGACCTTCCGGGAAGGGCAGGCGTTGTGCGTGTCTC ACCACGCCGATTTCCACCGACAGAGCGGTCACTGCGTCGCCGTAGAGATG CGTGATGGAGTTTCCAGGGTGCAGATGCCATAGACAGAAGAAGTAGGTTT GCTCGGTCGTTGGTTCGGGTGAATATTGGGAACAAACACACTTGTACGCA CGTGACGTGTTTTTCGCTGGAAGAGAAAACGAAAACTAACTGCAGTAGGA AAGAAAGGGAACGAATTTTGTTTTTGTCGGCTTTCCTCCCTGCAGCACAT GAGGAAACTTCCGTGTCTTCTTGTCTGTCGGTAGAAATAGACTGCGCATG CATGTGAAGCAAGCAAGGTGCTCTAGACTGGTTGACGACGCATGTATATA TCGATCGGGGAAAAAGGTACTTTGGATGTCAATTGACGCGACGAGTCAGT CGCTTTTTCTTGGCACTTCGCGCAAAGCCGCGCATTTTTGTTGCGGAATT CACGGCGGAGTACACAGGCGGTCGTTGTTATACTGTGCAGCTGACTACTG TATGTTTCGGGAGCACACCACGTGCTCACGTTGTTTAACGTTGGTCGTAC CCATGTCTAATTTTTAGTTGGTACGGTTCCAGCCGCCGTATAGAAATCAG TACAAAATCGCGTGTGTTTTCCATCAGATTGTGCCTCTCTCGCTGATGAT GCGTAGATAGCAACGGACCAACGGAGTGCTTCCGTCCAAGAGAAGCAGCA TGCCATGCATGCTTCCAACTTGCACATCCATC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10676:1969..6750-

>mRNA_Ecto-sp8_S_contig10676.1046.1 ID=mRNA_Ecto-sp8_S_contig10676.1046.1|Name=mRNA_Ecto-sp8_S_contig10676.1046.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1170bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10676:1969..6750- (Ectocarpus species8 EcLAC_412)
ATGGCTGACGCCAAGACGACTGCAGCAGACACGGGGGCCCGCCTGAAGGC
CAAGCGCAAGAGCTTGAAGGAGTCGGAGCGCCGCGTGCGCCAGGCATCAG
CGAGACTGGGAGGAGAGGACCTTGACGGACCGGACGGCACCGTCAGCGGC
GGCAGTTGTAGCGGCGGCGGCGGCGGCGGCGGCGGCAGTGCCGACCTCCC
CGAAGCGTCGTCTTTTGGCCCCGCAGTGAGGCAAGGGGCGTCGTCAGCGG
CGATTACTCCGGCCACGGTGGCGGCGGCAGCAGGAGGGGTGACGAGCTGG
GAGGGCACCGACGACGCGCGGGGCAATGACAAGGAGAATTTTCCGGCCCA
GCTGTCCGAGGCGGAGCTGTTAGGCAACAAGCACCAACTAGCGGCGAAGC
AAAAGCTGCTCTCAACCGAGCTGAGAGGCCTCCGTCGCCAGTCGGGCCAA
CGCCAGCAGCACCAGCATGAGGAGGAGGGGCGTCCGGTGAGCGGGAGCGG
GGCCGCGGTGGCGGCGGCGGCGGCGGCGGTTGTGGTGGCCGGCAGCGTGG
ACGAGGTCACCGTGACGAAGAGGAGGGCCAAGGTCGGCATGTTGAAGCAA
CAACTGAGGAGCGTTCTGGAAGGCACGCGTCAGCTAGAGGCAGGAGTGGT
CGCTTGCGAAGGCCGCATGCACGAAGCAAACGAGGCTTGCTACGCTTCCG
TTCGGGGGGAGCTACGGTCCCTGTTCGGCGCGCTCTGCCGCAACAAGAGC
GCCGATCTCGTCATGGCCGGGCCGAAGCTCGAGAACGGGTTACGTCTAGT
GGTCCGGAACGGCAACACCCAGGCAGCCGCCGCCGCCGCCGCCGCCACTA
CCACCACAACCCCGTCATCGGCGGTGGCGGGTGTGGTAGAGCGTGCCCCA
CAGGAGTTGAGCGGAGGCCAGCAGGCGTTGCTGGGGCTGGCGCTCGTGCT
GGCCCTGTCGTCGTATCAGGCGCCGCCGCTGTGCCTCCTCGACGAGGTGG
ACGCCGCCTTGGACGAGACCAATCAGGCGGCCGCGGCGCGCCTGGTGGCG
CTGACCTTCCGGGAAGGGCAGGCGTTGTGCGTGTCTCACCACGCCGATTT
CCACCGACAGAGCGGTCACTGCGTCGCCGTAGAGATGCGTGATGGAGTTT
CCAGGGTGCAGATGCCATAG
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