mRNA_Ecto-sp8_S_contig106710.1042.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106710.1042.1
Unique NamemRNA_Ecto-sp8_S_contig106710.1042.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106710.1042.1 vs. uniprot
Match: A0A6H5K292_9PHAE (SASA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K292_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.740e-17
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   40 MCFNARGDWRPAVEPLHRDIDLRKQHRCGVGPSLV 144
            MCFNARGDW PAVEPLHRDIDLRKQHRCGVGPSLV
Sbjct:    1 MCFNARGDWGPAVEPLHRDIDLRKQHRCGVGPSLV 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106710.1042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K292_9PHAE5.740e-1797.14SASA domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106710contigEcto-sp8_S_contig106710:328..480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143163.4796982-CDS-Ecto-sp8_S_contig106710:327..4801681143163.4796982-CDS-Ecto-sp8_S_contig106710:327..480Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106710 328..480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106710.1042.1prot_Ecto-sp8_S_contig106710.1042.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106710 328..480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106710.1042.1

>prot_Ecto-sp8_S_contig106710.1042.1 ID=prot_Ecto-sp8_S_contig106710.1042.1|Name=mRNA_Ecto-sp8_S_contig106710.1042.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp
MCSSLNTVHHHAVMCFNARGDWRPAVEPLHRDIDLRKQHRCGVGPSLVRI
*
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mRNA from alignment at Ecto-sp8_S_contig106710:328..480-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106710.1042.1 ID=mRNA_Ecto-sp8_S_contig106710.1042.1|Name=mRNA_Ecto-sp8_S_contig106710.1042.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106710:328..480- (Ectocarpus species8 EcLAC_412)
ATGTGCTCATCGCTAAATACCGTTCACCACCATGCAGTGATGTGCTTCAA
CGCGAGAGGGGACTGGAGACCAGCGGTCGAGCCACTACATCGAGACATAG
ATCTTCGCAAACAACACCGCTGTGGAGTTGGCCCGTCCCTGGTAAGGATC
TAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106710:328..480-

>mRNA_Ecto-sp8_S_contig106710.1042.1 ID=mRNA_Ecto-sp8_S_contig106710.1042.1|Name=mRNA_Ecto-sp8_S_contig106710.1042.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106710:328..480- (Ectocarpus species8 EcLAC_412)
ATGTGCTCATCGCTAAATACCGTTCACCACCATGCAGTGATGTGCTTCAA
CGCGAGAGGGGACTGGAGACCAGCGGTCGAGCCACTACATCGAGACATAG
ATCTTCGCAAACAACACCGCTGTGGAGTTGGCCCGTCCCTGGTAAGGATC
TAA
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