mRNA_Ecto-sp8_S_contig106677.1034.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106677.1034.1
Unique NamemRNA_Ecto-sp8_S_contig106677.1034.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106677.1034.1 vs. uniprot
Match: D8LNU4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNU4_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.320e-37
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 PSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAGGPSSARRK 201
            PSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAGGPSSARRK
Sbjct:   48 PSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAGGPSSARRK 114
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BLAST of mRNA_Ecto-sp8_S_contig106677.1034.1 vs. uniprot
Match: A0A6H5JMZ6_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ6_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.590e-36
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 PSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAGGPSSAR 195
            PSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAGGPSSAR
Sbjct:  188 PSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAGGPSSAR 252
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BLAST of mRNA_Ecto-sp8_S_contig106677.1034.1 vs. uniprot
Match: D8LGV1_ECTSI (FYVE, RhoGEF and PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.510e-22
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:   22 CGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAGGPSSA 192
            C VCEAEFT+LRRPHRCRRC+E VCA CSP RLPVPG+GSLE KRTC+LC G  ++A
Sbjct:  314 CAVCEAEFTQLRRPHRCRRCLEPVCAPCSPARLPVPGAGSLELKRTCKLCVGDDAAA 370
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BLAST of mRNA_Ecto-sp8_S_contig106677.1034.1 vs. uniprot
Match: A0A6H5JBA2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA2_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.580e-21
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   22 CGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAGGPSSA 192
            C VCE EFT+LRRPHRCRRC+E VCA CSP RLPVPG+GSLE KRTC+LC G  ++A
Sbjct:  173 CAVCEGEFTQLRRPHRCRRCLEPVCAPCSPARLPVPGAGSLELKRTCKLCVGDDAAA 229
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BLAST of mRNA_Ecto-sp8_S_contig106677.1034.1 vs. uniprot
Match: D7FJP7_ECTSI (Rho guanine nucleotide exchange factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.600e-15
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    4 SLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAG 177
            S +QQ CGVC AEFTR RRPHRCR C +AVCA+CSP RLP         KRTC+ CAG
Sbjct:  144 SSAQQQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLP---------KRTCKPCAG 192
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BLAST of mRNA_Ecto-sp8_S_contig106677.1034.1 vs. uniprot
Match: A0A6H5KYW1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.310e-13
Identity = 33/52 (63.46%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   22 CGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAG 177
            CGVC AEFTR RRPHRCR C + VCA+CSP RLP         KRTC+ CAG
Sbjct:  173 CGVCRAEFTRYRRPHRCRACSKVVCATCSPARLP---------KRTCKPCAG 215
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BLAST of mRNA_Ecto-sp8_S_contig106677.1034.1 vs. uniprot
Match: A0A8K1FD47_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD47_PYTOL)

HSP 1 Score: 51.2 bits (121), Expect = 8.140e-6
Identity = 24/59 (40.68%), Postives = 29/59 (49.15%), Query Frame = 1 
Query:    1 PSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPK--RTCRLC 171
            P      C +C+  FT L R H CRRC+  VCA CSP  LP+     +  K  R C  C
Sbjct:  189 PDDESDRCHICDETFTLLNRRHHCRRCLNIVCAVCSPRALPLRAFTEIPGKLQRVCNAC 247
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BLAST of mRNA_Ecto-sp8_S_contig106677.1034.1 vs. uniprot
Match: G4ZLQ3_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZLQ3_PHYSP)

HSP 1 Score: 50.4 bits (119), Expect = 1.510e-5
Identity = 26/62 (41.94%), Postives = 31/62 (50.00%), Query Frame = 1 
Query:    1 PSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPV-----PGSGSLEPKRTCRLC 171
            P     SC VC   FT L R H CRRC+  VCA CSP  +P+     P +G  +  R C  C
Sbjct:  154 PDDCSDSCSVCHEAFTFLNRRHHCRRCLNLVCAVCSPHTVPLRVFSEPPTGKRQ--RVCATC 213
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BLAST of mRNA_Ecto-sp8_S_contig106677.1034.1 vs. uniprot
Match: K3WX98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WX98_GLOUD)

HSP 1 Score: 48.9 bits (115), Expect = 5.340e-5
Identity = 22/60 (36.67%), Postives = 32/60 (53.33%), Query Frame = 1 
Query:    1 PSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPV---PGSGSLEPKRTCRLC 171
            P   +  C +C+  FT L R H CRRC+  VCA CSP  +P+     + +   +R C +C
Sbjct:  193 PDNERDQCTICDEAFTFLNRRHHCRRCLNLVCAVCSPHAMPLRVFTQNATATRQRICVVC 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106677.1034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LNU4_ECTSI1.320e-37100.00FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMZ6_9PHAE1.590e-36100.00FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LGV1_ECTSI4.510e-2275.44FYVE, RhoGEF and PH domain-containing protein n=1 ... [more]
A0A6H5JBA2_9PHAE1.580e-2173.68FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FJP7_ECTSI3.600e-1563.79Rho guanine nucleotide exchange factor n=1 Tax=Ect... [more]
A0A6H5KYW1_9PHAE5.310e-1363.46FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8K1FD47_PYTOL8.140e-640.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4ZLQ3_PHYSP1.510e-541.94Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
K3WX98_GLOUD5.340e-536.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106677contigEcto-sp8_S_contig106677:231..431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score67.4
Seed ortholog evalue2.9e-09
Seed eggNOG ortholog529818.AMSG_11214T0
Model size201
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.negative regulation of epidermal growth factor-activated receptor activity
EggNOG OGsKOG1819@1,KOG1819@2759
Cds size201
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.9553316-CDS-Ecto-sp8_S_contig106677:230..4311681143162.9553316-CDS-Ecto-sp8_S_contig106677:230..431Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106677 231..431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106677.1034.1prot_Ecto-sp8_S_contig106677.1034.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106677 231..431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106677.1034.1

>prot_Ecto-sp8_S_contig106677.1034.1 ID=prot_Ecto-sp8_S_contig106677.1034.1|Name=mRNA_Ecto-sp8_S_contig106677.1034.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=67bp
PSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEP
KRTCRLCAGGPSSARRK
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mRNA from alignment at Ecto-sp8_S_contig106677:231..431-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106677.1034.1 ID=mRNA_Ecto-sp8_S_contig106677.1034.1|Name=mRNA_Ecto-sp8_S_contig106677.1034.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106677:231..431- (Ectocarpus species8 EcLAC_412)
CCGTCGCTGTCTCAGCAGTCGTGCGGCGTTTGCGAGGCCGAGTTCACCCG
GCTGCGCCGCCCGCACCGCTGCCGCCGGTGCATGGAGGCCGTTTGCGCCT
CCTGCTCGCCGTTGAGACTACCGGTTCCCGGCTCGGGCAGCCTCGAGCCC
AAGCGTACCTGCAGGCTCTGCGCCGGAGGCCCGTCGTCGGCGCGAAGGAA
G
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106677:231..431-

>mRNA_Ecto-sp8_S_contig106677.1034.1 ID=mRNA_Ecto-sp8_S_contig106677.1034.1|Name=mRNA_Ecto-sp8_S_contig106677.1034.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106677:231..431- (Ectocarpus species8 EcLAC_412)
CCGTCGCTGTCTCAGCAGTCGTGCGGCGTTTGCGAGGCCGAGTTCACCCG
GCTGCGCCGCCCGCACCGCTGCCGCCGGTGCATGGAGGCCGTTTGCGCCT
CCTGCTCGCCGTTGAGACTACCGGTTCCCGGCTCGGGCAGCCTCGAGCCC
AAGCGTACCTGCAGGCTCTGCGCCGGAGGCCCGTCGTCGGCGCGAAGGAA
G
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