mRNA_Ecto-sp8_S_contig10659.1021.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10659.1021.1
Unique NamemRNA_Ecto-sp8_S_contig10659.1021.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10659.1021.1 vs. uniprot
Match: D7FLY7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLY7_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 3.890e-85
Identity = 132/136 (97.06%), Postives = 132/136 (97.06%), Query Frame = 3 
Query:  246 MILDAGVVVGTCALVVLVWNLGRMNNVMKELENQCCEEERTPDTFDIEAKGGGELVLVKDEEDDGQTAEEAGERSPTPTRQDVAMLKAAMRREHFQCMVPGTLTPDPWRSIFYGRGRPTDVGPCRSLSSSGHSMAG 653
            MILDAGVVVGTCALVVLVWNLGRMNNVMKELENQCCEEERTPDTFDIEAKGGGELVLVKDEEDDGQT EEA ERSPTPTRQDVAMLKAAMRREH Q MVPGTLTPDPWRSIFYGRGRPTDVGPCRSLSSSGHSMAG
Sbjct:    1 MILDAGVVVGTCALVVLVWNLGRMNNVMKELENQCCEEERTPDTFDIEAKGGGELVLVKDEEDDGQTTEEAEERSPTPTRQDVAMLKAAMRREHLQRMVPGTLTPDPWRSIFYGRGRPTDVGPCRSLSSSGHSMAG 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10659.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLY7_ECTSI3.890e-8597.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10659contigEcto-sp8_S_contig10659:717..4395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1716
Hectar predicted targeting categorysignal peptide
Exons2
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.2469437-UTR-Ecto-sp8_S_contig10659:716..17761681143162.2469437-UTR-Ecto-sp8_S_contig10659:716..1776Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10659 717..1776 -
1681143162.2835653-UTR-Ecto-sp8_S_contig10659:4150..43951681143162.2835653-UTR-Ecto-sp8_S_contig10659:4150..4395Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10659 4151..4395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.2598684-CDS-Ecto-sp8_S_contig10659:1776..20971681143162.2598684-CDS-Ecto-sp8_S_contig10659:1776..2097Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10659 1777..2097 -
1681143162.272595-CDS-Ecto-sp8_S_contig10659:4060..41501681143162.272595-CDS-Ecto-sp8_S_contig10659:4060..4150Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10659 4061..4150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10659.1021.1prot_Ecto-sp8_S_contig10659.1021.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10659 1777..4150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10659.1021.1

>prot_Ecto-sp8_S_contig10659.1021.1 ID=prot_Ecto-sp8_S_contig10659.1021.1|Name=mRNA_Ecto-sp8_S_contig10659.1021.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=137bp
MILDAGVVVGTCALVVLVWNLGRMNNVMKELENQCCEEERTPDTFDIEAK
GGGELVLVKDEEDDGQTAEEAGERSPTPTRQDVAMLKAAMRREHFQCMVP
GTLTPDPWRSIFYGRGRPTDVGPCRSLSSSGHSMAG*
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mRNA from alignment at Ecto-sp8_S_contig10659:717..4395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10659.1021.1 ID=mRNA_Ecto-sp8_S_contig10659.1021.1|Name=mRNA_Ecto-sp8_S_contig10659.1021.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3679bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10659:717..4395- (Ectocarpus species8 EcLAC_412)
AAAATTTCAAACCCCTGCTACTACTGCGGTTGGTGACATCAACCACTGCG
GGAGGCGGGGCGTGCTACGGCACCTGCCTCGCTCGGTCGCAGTTAACGGC
CTTGAAGCATCATTCACGGGGTGAGAACCCACGCTAGGAGTTGACGAGAT
CGCTTCTCAACACACCTCTCGGCGGAGAGAGCGCGCCACGGGCAGCAAGG
AGGTGTTGGAGAGGGGACAGAGGAGGCAATTGAAGCTACAGCGCCATGAT
CCTGGACGCTGGAGTCGTGGTGGGGACATGCGCCCTTGTGGTGCTTGTGT
GGAACCTCGGACGTATGAATAACGTCATGAAGGAGGTGAGTCGGGTCTCG
ACAAGAGGGTCGCGATCGGAACTTACTGTAACTACGAACAGCGGTCAAAT
ACTTGGAGAACCTGGTAGGAGAGTTGAACTTGGACCAATCTAACCCTGCG
GCGTTGTGTTTCTTCAAGGACATCGATCGACCGCACACCCGAAGCGTGTG
GAACCCAACCGAGACTCGCTGACACCTGACACGTGGGAGGCGGAAGAACT
CCGTGGCGGTTGGCCCGCCTTCTTGAATGCAGTCTGTAGTCGAGAGGACT
GTCTGCACCACCAGCGCTCGACAACGACGGGTTGCCGGCAGCAGGATCAA
CCCTTACCTTGCTCGCCGTTCTGCACAACACAGCAGTAGTCGAGAGGACT
GTCTGCACCACCACGCGCTCGACAACGACGGGTTGCCGGCAGCAGGATCA
ACCCGTACCTTGCTCGCCGTTTTGCACAACACAGCAGAAGTGATCAACGT
CCAACAGTTGAAGAACTTGCAAGAGTTGTATTTTCATGTCACGCATTCGG
ATTGGCGCCCTACACGACAAGAGAACGTCGGACACGGAAGACGGCGGAAA
ATCGCGAACGCAAAAAAGAATGCGAAGCACGAGACGCCAGCTGTGCATCA
GGGGGGCGGCACCAACAGCTGCTGTGGTAGTTAAAAAAATAGAGCAGTGG
CCAAAATCGGGTACACCCGGTCCAAACACGGCCATAATCGGGTACCCCTA
CAAGATGCTGCTGGGAGAGACCGCATGCCACCATCTGATTGGCCGACACC
CGCCCCTACCCGACCTTGACCGCCTTTCCACCGGGTGCACCCGATCTTGG
CTACTCACCCTCGGGAGGAGTACCCGGTTTTCTTTCCCCAACCCGAAAAT
GGCTGGGCTGTTCGACCAAAACCCATGCACGCAAGTACACGTCAGCAACG
CCCTGCCTTCGAATTCGAACCTTCTGACGGCCCGGCGGGCCGAGGCAGAC
CCCCCGCCGGCGGTGGAAGTCTCCCTTGGGGGAAACGGCAGGCGGTCTGT
GCAAAGGATCGAGAAGAAGAAAGAGCTGGATGAATAACTCCCTCACGAGA
TGCGACACACGCGGGACTCATCTCAAGAATAGACATATTCTCTCCCTCCC
GCTACTTTCTCATTATTGGCGACAAACGAGGGCCAGTGGTGTGCGTCCGA
CCCGTGGTTGTGTGCATGGGTTTTGGTCGAACAGCCCAGCCATTTTCGGG
TTGGGGAAAGAAAAACCGGGTACCCCTCCCGAGGGTGAGTAGCCAAGATC
GGGTGCACCCGGTGGAAAGGCGGTCAAGGTCGGGTAGGGGCGGGCGTCGG
CCAATCAGATGGTGGCATGCGGTCGCTCCCAGCGGCATCTTGTAGGGGTA
CCCGATTATGGCCGTGTTTGGACCGGGTGTACCCGATTTTGGCCACTGCT
CTAAAAAATATAAATACATACAGTAGTGTTCCCTACAATGCCCCCGAAGG
AGAGAGACACCGGCCTGACGTGGGTATGTGTGGGTTTGTTCGTTCTAGCA
TGTACCTGCTGCCGAATGTCGAACCCACGACGACGCCCTACACTAAAACT
GCACACGCAGATATCAACTTGACCGTGCGGCACTGACTGGAGGTTGTCTG
TGGGTCAATGTTCGCACTTCCTACTCAGGGTTTAGTCTGAATGCAAAGCA
GCACTGCTGTTGCTGTTGCGATGGAATATTGCTGCCTTTTCTAGCGCTCC
CGACACGATTGAGCAAAATAGAAAACACGCACTACAAGCAGTTTTGAAGC
GAAAAACTTTCCAACCTGCTAACAGCTTCATTCAGAAAAAACACACAGAG
ATACCTCGATCAATGTGTAGTGTTACCCGCGGCTCGACATAAACCATTGC
AGTACCCTACTGCCTCACCCCTAATAAAACGTTGCCGGTTCTGACCAATT
TCTTCCTCCCGTCTGCCCCTTGACTATGTACCTGGCTTCGTCTTTCAGTT
GGAAAACCAGTGCTGTGAAGAAGAACGCACCCCCGACACCTTCGATATTG
AAGCTAAGGGGGGCGGAGAGCTTGTTCTCGTCAAAGACGAAGAAGATGAT
GGGCAAACGGCGGAAGAAGCGGGAGAACGCTCGCCGACACCGACCAGACA
GGACGTGGCGATGCTCAAGGCGGCCATGCGCCGCGAGCACTTCCAGTGCA
TGGTGCCAGGTACCCTGACCCCTGACCCGTGGCGAAGCATCTTCTACGGA
CGAGGCCGCCCGACAGACGTCGGTCCTTGCAGAAGCCTCTCCAGCAGCGG
TCATAGTATGGCCGGGTAGGACGAAGTCATTGACGAGGCAATGGTGTGGG
TTGTTCTAATGGACCGTTGTATGCCCCAACGACAGGATTGAGGAGTGGGG
AAGGACAAGCTGGTTGGACGAAGAGAGAGAGAGGGGGGGAGGTGAAATGT
GGGGATGGTTCTTTGGCTCATGCGTCGAGCGAGGTACCGTCATCGTCGTG
GTGTACGGTTTTGACCACGGCATGTGAGAATCTGTGTGCATAAGTTGTGA
AGGGTTCAAGTTGAAGCAACAGCGGACGAGGGCTTGTACTATAGCTGTAG
CAGTACTTGTCGGAGACTTGTGATCTATCAAGCGTTTGTCTGTACCAACA
CTCTCCGCGGTAACTACTGCATCGTAATATACTGAACTTGTGGTACGAGG
CTCTAGCCCTTGGTGTAAATGCAGGTGTGCTCAAGTCTGTCTCCCTTGGG
AGGGCTCGCGTGAGAAAAGTTTTGAAAAGTTTTTATCATCTATCTCGCGG
GACGCTTTCGGTTCCGTATTTCGTATTCCGTCGAAACTTCGACTCCTAAA
TGCGTCAGGCGGCTTAGGCTGCGGAAAAGGAGCCTGTCGGCAAGAAACGG
CCATCGTGATTTGTAAAGTACTGGTGTGAATATATTTATGTTATTGTTGA
TGTTGTTCTGTGCCCAAGCGTCGTCGCCTCTAGAGTAGACAAGAGGGCGG
CTGGTTCATGCCGATGAGGGATTTCCCCTCCAGTGACAGGTTCCGTGTGT
TTGGCTACATGTGGGATGGCCCAGCCCGTGTTTTGGGTTTTAACTTTCGC
GGCAGAGGCCCTCCGCGCTGGCGAGAGCCAATTTAAGAGTTGTAGGTAGC
GTGGATGTTGTGAGTGTAGCAGTCTGTGATTGCTTCTAATGTGTACATTT
TTGTGTAATATTCACGGTAGTCGCCGGACTCTACCGCAGAAGCTTAAGTC
GGCAAGCGCCAAAGAGACTGAATTGTCCCTGAGGGACAAGAGGGAGAGCT
GCCCAGCAACATGCCCGGCGGATATCTGTTGGCCGGTTCGTGGTGATGTT
CAGAAGAAGCAAGCAAGTGTTTATGTCAT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10659:717..4395-

>mRNA_Ecto-sp8_S_contig10659.1021.1 ID=mRNA_Ecto-sp8_S_contig10659.1021.1|Name=mRNA_Ecto-sp8_S_contig10659.1021.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10659:717..4395- (Ectocarpus species8 EcLAC_412)
ATGATCCTGGACGCTGGAGTCGTGGTGGGGACATGCGCCCTTGTGGTGCT
TGTGTGGAACCTCGGACGTATGAATAACGTCATGAAGGAGTTGGAAAACC
AGTGCTGTGAAGAAGAACGCACCCCCGACACCTTCGATATTGAAGCTAAG
GGGGGCGGAGAGCTTGTTCTCGTCAAAGACGAAGAAGATGATGGGCAAAC
GGCGGAAGAAGCGGGAGAACGCTCGCCGACACCGACCAGACAGGACGTGG
CGATGCTCAAGGCGGCCATGCGCCGCGAGCACTTCCAGTGCATGGTGCCA
GGTACCCTGACCCCTGACCCGTGGCGAAGCATCTTCTACGGACGAGGCCG
CCCGACAGACGTCGGTCCTTGCAGAAGCCTCTCCAGCAGCGGTCATAGTA
TGGCCGGGTAG
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