mRNA_Ecto-sp8_S_contig106540.1017.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106540.1017.1
Unique NamemRNA_Ecto-sp8_S_contig106540.1017.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A522VYG7_9PROT (Tol-Pal system protein TolB (Fragment) n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522VYG7_9PROT)

HSP 1 Score: 189 bits (481), Expect = 5.140e-60
Identity = 87/124 (70.16%), Postives = 98/124 (79.03%), Query Frame = 1
Query:    1 LYVMNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLIP 372
            +YVM A G N  RISFG+GRY TPVWSPRGDLIAFTK   G F+IGVM PDGSGERLL + +LVEGPTWAPNGRVL F+R+  S   G G  V L +IDLTG+NER++ TPL GSDPAWSPLIP
Sbjct:   11 MYVMAASGANPNRISFGDGRYGTPVWSPRGDLIAFTKQKGGQFFIGVMHPDGSGERLLAEGFLVEGPTWAPNGRVLSFFRESPSDERGRGQSVRLYTIDLTGFNERVLLTPLDGSDPAWSPLIP 134          
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2D7TYR2_9PROT (Tol-Pal system protein TolB n=1 Tax=SAR116 cluster bacterium TaxID=2024888 RepID=A0A2D7TYR2_9PROT)

HSP 1 Score: 183 bits (465), Expect = 8.080e-54
Identity = 79/123 (64.23%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    1 LYVMNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLI 369
            L++M++DG NVKRIS+ +GRYATPVWSPRGD+IAFTK   G F+IG+MR DG+ ERLL + +LVE PTWAPNGRVLM+Y+Q R + DGSGG   L  +D+TG+NE I+ TP   SDPAWSPL+
Sbjct:  319 LFIMDSDGRNVKRISYNKGRYATPVWSPRGDVIAFTKMLAGEFFIGIMRTDGTAERLLARGFLVEAPTWAPNGRVLMYYKQDRFEQDGSGGNTRLYKVDITGFNESIMNTPADASDPAWSPLL 441          
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2N3E6M7_9PROT (Tol-Pal system protein TolB (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3E6M7_9PROT)

HSP 1 Score: 173 bits (438), Expect = 3.440e-53
Identity = 81/123 (65.85%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 LYVMNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLI 369
            +YVM+ADG N +R+SFG+G YATPVWSPRGDLIAFTK + G F IGVMRPDG+GER+LT+ Y  EGPTWAPNGRVLMF+R+ R    G G    L S+D+TGYNER V      SDPAWSP I
Sbjct:   35 IYVMDADGSNQRRVSFGQGSYATPVWSPRGDLIAFTKMTSGRFVIGVMRPDGTGERVLTEGYHNEGPTWAPNGRVLMFFRETRGAQGGPG----LWSVDVTGYNERPVPAATMASDPAWSPRI 153          
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2E4A3A8_9BACT (Tol-Pal system beta propeller repeat protein TolB n=2 Tax=Bacteria TaxID=2 RepID=A0A2E4A3A8_9BACT)

HSP 1 Score: 179 bits (454), Expect = 4.030e-52
Identity = 84/126 (66.67%), Postives = 100/126 (79.37%), Query Frame = 1
Query:   13 NADGGNVKRISFG----EGRYATPVWSPRGDLIAFTKFSKG--VFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLIP 372
            NADG N  RISFG     GRY TPVWSPRGDLIAFT++++G   FYIGVM+PDG+GERLL + +LVE PTWAPNGRVLM++ Q  +++DGSGG+  L SIDLTGYN+R + TP   SDPAWSPLIP
Sbjct:  327 NADGSNQTRISFGTEGRRGRYGTPVWSPRGDLIAFTRYAQGDGQFYIGVMKPDGTGERLLAKGFLVEAPTWAPNGRVLMYFAQSPTRADGSGGRTRLFSIDLTGYNQREILTPQNASDPAWSPLIP 452          
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A383AXL8_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383AXL8_9ZZZZ)

HSP 1 Score: 163 bits (412), Expect = 2.120e-48
Identity = 74/116 (63.79%), Postives = 91/116 (78.45%), Query Frame = 1
Query:   22 GGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLI 369
            GG  +RISFG+G+YATPVWSPRGD IAFT   KG+F IGVMRPDGS +R + + YL EGPTWAPNGRVLMF+R+++   D +G +  L S+D+TG NER + TP+  SDPAWSPLI
Sbjct:   98 GGKEQRISFGDGKYATPVWSPRGDWIAFTNIHKGIFSIGVMRPDGSDDRRVAKGYLTEGPTWAPNGRVLMFFREEQPVGDVAG-EPRLYSVDITGTNEREIITPMDASDPAWSPLI 212          
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A4Q7DJV3_9RICK (Tol-Pal system protein TolB n=1 Tax=Rickettsiales endosymbiont of Peranema trichophorum TaxID=2486577 RepID=A0A4Q7DJV3_9RICK)

HSP 1 Score: 169 bits (428), Expect = 2.280e-48
Identity = 80/123 (65.04%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 LYVMNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLI 369
            LYVMN DG +VKRISFG G YATPVWSPRGD IAFTKF    FYIG+MR DGSGERLLT S+L EGPTW+PNGRV+MF R++        G   L +ID+TGY+ER++ TP   SDPAWS L+
Sbjct:  324 LYVMNRDGSDVKRISFGTGVYATPVWSPRGDYIAFTKFDAQAFYIGIMRTDGSGERLLTTSWLDEGPTWSPNGRVIMFTRRRMD------GHSNLYAIDITGYHERLIRTPQDASDPAWSHLL 440          
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A1H7IYZ3_9SPHN (Tol-Pal system protein TolB n=6 Tax=Sphingomonas TaxID=13687 RepID=A0A1H7IYZ3_9SPHN)

HSP 1 Score: 168 bits (425), Expect = 1.220e-47
Identity = 82/122 (67.21%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    7 VMNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLIP 372
            VMNADG N +RISFG GRYATPVWSPRGDLIAFTK + G F IGVM P+GSGERLLT  Y  EGP+W+PNGRV+ F+R       GSGG+ +L S+DLTG N R + TPL GSDPAW PL P
Sbjct:  359 VMNADGSNQQRISFGGGRYATPVWSPRGDLIAFTKLA-GSFRIGVMNPNGSGERLLTDGYQDEGPSWSPNGRVITFFRT----GSGSGGKADLWSVDLTGVNARRIPTPLDGSDPAWGPLQP 475          
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2E4I3I4_9PROT (Tol-Pal system protein TolB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4I3I4_9PROT)

HSP 1 Score: 167 bits (423), Expect = 1.410e-47
Identity = 78/117 (66.67%), Postives = 89/117 (76.07%), Query Frame = 1
Query:   22 GGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLIP 372
            G   KRI +G G+YATPVWSPRGD IAFT   KG FYIGVMRPDGSGER L + +LVEGPTWAPNGR+LMFY+Q R    GSG +V L S+D+ G N R + TP+  SDPAWSPLIP
Sbjct:  332 GAEAKRIXYGSGKYATPVWSPRGDWIAFTNIYKGKFYIGVMRPDGSGERKLAKGFLVEGPTWAPNGRLLMFYKQDRPTGQGSG-KVGLFSVDILGTNLREIITPMNASDPAWSPLIP 447          
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2S6RXL8_9PROT (Tol-Pal system protein TolB n=5 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A2S6RXL8_9PROT)

HSP 1 Score: 167 bits (423), Expect = 1.780e-47
Identity = 78/116 (67.24%), Postives = 91/116 (78.45%), Query Frame = 1
Query:   25 GNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLIP 372
            G  +RIS+G+G+YATPVWSPRGD IAFT  +KGVF IGVMRPDGS ER + + YL EGPTWAPNGRVLMF+R+ +  SD   G V L S+D+TG NER V TP+  SDPAWSPLIP
Sbjct:  345 GEEQRISWGDGKYATPVWSPRGDWIAFTNINKGVFSIGVMRPDGSDERRIAKGYLTEGPTWAPNGRVLMFFREDQP-SDDMAGDVRLYSVDITGTNEREVITPMDASDPAWSPLIP 459          
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2S6QL81_9PROT (Tol-Pal system protein TolB n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QL81_9PROT)

HSP 1 Score: 165 bits (418), Expect = 1.130e-46
Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = 1
Query:   34 KRISFGEG-RYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPL 366
            +RISF  G RY TPVWSPRGDLIAFTKF KG F+IGVM+ DGSGERLLT+ ++VEGPTWAPNGRVLMFYRQ+R    G G    L SIDLTG+NER + TP   SDPAWS L
Sbjct:  341 RRISFKRGGRYGTPVWSPRGDLIAFTKFYKGSFHIGVMKSDGSGERLLTKGFIVEGPTWAPNGRVLMFYRQQRQNEKGEGSNPRLYSIDLTGHNEREIITPEDASDPAWSRL 452          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A522VYG7_9PROT5.140e-6070.16Tol-Pal system protein TolB (Fragment) n=1 Tax=Mag... [more]
A0A2D7TYR2_9PROT8.080e-5464.23Tol-Pal system protein TolB n=1 Tax=SAR116 cluster... [more]
A0A2N3E6M7_9PROT3.440e-5365.85Tol-Pal system protein TolB (Fragment) n=1 Tax=Alp... [more]
A0A2E4A3A8_9BACT4.030e-5266.67Tol-Pal system beta propeller repeat protein TolB ... [more]
A0A383AXL8_9ZZZZ2.120e-4863.79Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A4Q7DJV3_9RICK2.280e-4865.04Tol-Pal system protein TolB n=1 Tax=Rickettsiales ... [more]
A0A1H7IYZ3_9SPHN1.220e-4767.21Tol-Pal system protein TolB n=6 Tax=Sphingomonas T... [more]
A0A2E4I3I4_9PROT1.410e-4766.67Tol-Pal system protein TolB n=1 Tax=Rhodospirillac... [more]
A0A2S6RXL8_9PROT1.780e-4767.24Tol-Pal system protein TolB n=5 Tax=unclassified A... [more]
A0A2S6QL81_9PROT1.130e-4670.54Tol-Pal system protein TolB n=1 Tax=Alphaproteobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106540contigEcto-sp8_S_contig106540:127..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score186.0
Seed ortholog evalue1e-44
Seed eggNOG ortholog1380394.JADL01000003_gene5057
Preferred nametolB
Model size375
KEGG koko:K03641
KEGG TC2.C.1.2
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006810,GO:0008104,GO:0008150,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0015031,GO:0015833,GO:0015893,GO:0017038,GO:0019534,GO:0019904,GO:0022857,GO:0030288,GO:0030313,GO:0031975,GO:0032153,GO:0032991,GO:0033036,GO:0042221,GO:0042493,GO:0042597,GO:0042886,GO:0042891,GO:0043213,GO:0044464,GO:0044877,GO:0045184,GO:0046677,GO:0046678,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071236,GO:0071237,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901998
Exons1
EggNOG free text desc.Involved in the TonB-independent uptake of proteins
EggNOG OGs1MV09@1224,2JQ9G@204441,2TR03@28211,COG0823@1,COG0823@2
Cds size366
COG Functional cat.U
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.017409-CDS-Ecto-sp8_S_contig106540:126..4921681143162.017409-CDS-Ecto-sp8_S_contig106540:126..492Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106540 127..492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.029324-UTR-Ecto-sp8_S_contig106540:492..5011681143162.029324-UTR-Ecto-sp8_S_contig106540:492..501Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig106540 493..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106540.1017.1prot_Ecto-sp8_S_contig106540.1017.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106540 127..492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106540.1017.1

>prot_Ecto-sp8_S_contig106540.1017.1 ID=prot_Ecto-sp8_S_contig106540.1017.1|Name=mRNA_Ecto-sp8_S_contig106540.1017.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=122bp
MNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGS
GERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGY
NERIVTTPLQGSDPAWSPLIP*
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mRNA from alignment at Ecto-sp8_S_contig106540:127..501-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106540.1017.1 ID=mRNA_Ecto-sp8_S_contig106540.1017.1|Name=mRNA_Ecto-sp8_S_contig106540.1017.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106540:127..501- (Ectocarpus species8 EcLAC_412)
CTCTACGTGATGAACGCGGATGGCGGTAATGTGAAGAGGATCAGTTTCGG TGAAGGGCGTTATGCAACACCTGTCTGGTCGCCACGCGGTGATCTGATTG CCTTTACGAAATTCTCCAAGGGGGTTTTCTATATCGGTGTGATGCGTCCG GATGGCAGCGGGGAGCGTTTGCTGACCCAGTCCTATCTGGTCGAGGGGCC AACATGGGCACCAAACGGGCGGGTTCTGATGTTCTATCGTCAGAAGCGGA GCAAGTCAGACGGGTCCGGTGGTCAGGTGGAACTCGTTTCAATTGATCTC ACCGGATACAATGAGCGTATTGTCACAACTCCGTTACAGGGCAGTGACCC CGCATGGTCCCCCTTGATTCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106540:127..501-

>mRNA_Ecto-sp8_S_contig106540.1017.1 ID=mRNA_Ecto-sp8_S_contig106540.1017.1|Name=mRNA_Ecto-sp8_S_contig106540.1017.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106540:127..501- (Ectocarpus species8 EcLAC_412)
ATGAACGCGGATGGCGGTAATGTGAAGAGGATCAGTTTCGGTGAAGGGCG
TTATGCAACACCTGTCTGGTCGCCACGCGGTGATCTGATTGCCTTTACGA
AATTCTCCAAGGGGGTTTTCTATATCGGTGTGATGCGTCCGGATGGCAGC
GGGGAGCGTTTGCTGACCCAGTCCTATCTGGTCGAGGGGCCAACATGGGC
ACCAAACGGGCGGGTTCTGATGTTCTATCGTCAGAAGCGGAGCAAGTCAG
ACGGGTCCGGTGGTCAGGTGGAACTCGTTTCAATTGATCTCACCGGATAC
AATGAGCGTATTGTCACAACTCCGTTACAGGGCAGTGACCCCGCATGGTC
CCCCTTGATTCCGTGA
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