mRNA_Ecto-sp8_S_contig106540.1017.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A522VYG7_9PROT (Tol-Pal system protein TolB (Fragment) n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522VYG7_9PROT) HSP 1 Score: 189 bits (481), Expect = 5.140e-60 Identity = 87/124 (70.16%), Postives = 98/124 (79.03%), Query Frame = 1
Query: 1 LYVMNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLIP 372
+YVM A G N RISFG+GRY TPVWSPRGDLIAFTK G F+IGVM PDGSGERLL + +LVEGPTWAPNGRVL F+R+ S G G V L +IDLTG+NER++ TPL GSDPAWSPLIP
Sbjct: 11 MYVMAASGANPNRISFGDGRYGTPVWSPRGDLIAFTKQKGGQFFIGVMHPDGSGERLLAEGFLVEGPTWAPNGRVLSFFRESPSDERGRGQSVRLYTIDLTGFNERVLLTPLDGSDPAWSPLIP 134
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2D7TYR2_9PROT (Tol-Pal system protein TolB n=1 Tax=SAR116 cluster bacterium TaxID=2024888 RepID=A0A2D7TYR2_9PROT) HSP 1 Score: 183 bits (465), Expect = 8.080e-54 Identity = 79/123 (64.23%), Postives = 99/123 (80.49%), Query Frame = 1
Query: 1 LYVMNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLI 369
L++M++DG NVKRIS+ +GRYATPVWSPRGD+IAFTK G F+IG+MR DG+ ERLL + +LVE PTWAPNGRVLM+Y+Q R + DGSGG L +D+TG+NE I+ TP SDPAWSPL+
Sbjct: 319 LFIMDSDGRNVKRISYNKGRYATPVWSPRGDVIAFTKMLAGEFFIGIMRTDGTAERLLARGFLVEAPTWAPNGRVLMYYKQDRFEQDGSGGNTRLYKVDITGFNESIMNTPADASDPAWSPLL 441
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2N3E6M7_9PROT (Tol-Pal system protein TolB (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3E6M7_9PROT) HSP 1 Score: 173 bits (438), Expect = 3.440e-53 Identity = 81/123 (65.85%), Postives = 94/123 (76.42%), Query Frame = 1
Query: 1 LYVMNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLI 369
+YVM+ADG N +R+SFG+G YATPVWSPRGDLIAFTK + G F IGVMRPDG+GER+LT+ Y EGPTWAPNGRVLMF+R+ R G G L S+D+TGYNER V SDPAWSP I
Sbjct: 35 IYVMDADGSNQRRVSFGQGSYATPVWSPRGDLIAFTKMTSGRFVIGVMRPDGTGERVLTEGYHNEGPTWAPNGRVLMFFRETRGAQGGPG----LWSVDVTGYNERPVPAATMASDPAWSPRI 153
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2E4A3A8_9BACT (Tol-Pal system beta propeller repeat protein TolB n=2 Tax=Bacteria TaxID=2 RepID=A0A2E4A3A8_9BACT) HSP 1 Score: 179 bits (454), Expect = 4.030e-52 Identity = 84/126 (66.67%), Postives = 100/126 (79.37%), Query Frame = 1
Query: 13 NADGGNVKRISFG----EGRYATPVWSPRGDLIAFTKFSKG--VFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLIP 372
NADG N RISFG GRY TPVWSPRGDLIAFT++++G FYIGVM+PDG+GERLL + +LVE PTWAPNGRVLM++ Q +++DGSGG+ L SIDLTGYN+R + TP SDPAWSPLIP
Sbjct: 327 NADGSNQTRISFGTEGRRGRYGTPVWSPRGDLIAFTRYAQGDGQFYIGVMKPDGTGERLLAKGFLVEAPTWAPNGRVLMYFAQSPTRADGSGGRTRLFSIDLTGYNQREILTPQNASDPAWSPLIP 452
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A383AXL8_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383AXL8_9ZZZZ) HSP 1 Score: 163 bits (412), Expect = 2.120e-48 Identity = 74/116 (63.79%), Postives = 91/116 (78.45%), Query Frame = 1
Query: 22 GGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLI 369
GG +RISFG+G+YATPVWSPRGD IAFT KG+F IGVMRPDGS +R + + YL EGPTWAPNGRVLMF+R+++ D +G + L S+D+TG NER + TP+ SDPAWSPLI
Sbjct: 98 GGKEQRISFGDGKYATPVWSPRGDWIAFTNIHKGIFSIGVMRPDGSDDRRVAKGYLTEGPTWAPNGRVLMFFREEQPVGDVAG-EPRLYSVDITGTNEREIITPMDASDPAWSPLI 212
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A4Q7DJV3_9RICK (Tol-Pal system protein TolB n=1 Tax=Rickettsiales endosymbiont of Peranema trichophorum TaxID=2486577 RepID=A0A4Q7DJV3_9RICK) HSP 1 Score: 169 bits (428), Expect = 2.280e-48 Identity = 80/123 (65.04%), Postives = 93/123 (75.61%), Query Frame = 1
Query: 1 LYVMNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLI 369
LYVMN DG +VKRISFG G YATPVWSPRGD IAFTKF FYIG+MR DGSGERLLT S+L EGPTW+PNGRV+MF R++ G L +ID+TGY+ER++ TP SDPAWS L+
Sbjct: 324 LYVMNRDGSDVKRISFGTGVYATPVWSPRGDYIAFTKFDAQAFYIGIMRTDGSGERLLTTSWLDEGPTWSPNGRVIMFTRRRMD------GHSNLYAIDITGYHERLIRTPQDASDPAWSHLL 440
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A1H7IYZ3_9SPHN (Tol-Pal system protein TolB n=6 Tax=Sphingomonas TaxID=13687 RepID=A0A1H7IYZ3_9SPHN) HSP 1 Score: 168 bits (425), Expect = 1.220e-47 Identity = 82/122 (67.21%), Postives = 93/122 (76.23%), Query Frame = 1
Query: 7 VMNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLIP 372
VMNADG N +RISFG GRYATPVWSPRGDLIAFTK + G F IGVM P+GSGERLLT Y EGP+W+PNGRV+ F+R GSGG+ +L S+DLTG N R + TPL GSDPAW PL P
Sbjct: 359 VMNADGSNQQRISFGGGRYATPVWSPRGDLIAFTKLA-GSFRIGVMNPNGSGERLLTDGYQDEGPSWSPNGRVITFFRT----GSGSGGKADLWSVDLTGVNARRIPTPLDGSDPAWGPLQP 475
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2E4I3I4_9PROT (Tol-Pal system protein TolB n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4I3I4_9PROT) HSP 1 Score: 167 bits (423), Expect = 1.410e-47 Identity = 78/117 (66.67%), Postives = 89/117 (76.07%), Query Frame = 1
Query: 22 GGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLIP 372
G KRI +G G+YATPVWSPRGD IAFT KG FYIGVMRPDGSGER L + +LVEGPTWAPNGR+LMFY+Q R GSG +V L S+D+ G N R + TP+ SDPAWSPLIP
Sbjct: 332 GAEAKRIXYGSGKYATPVWSPRGDWIAFTNIYKGKFYIGVMRPDGSGERKLAKGFLVEGPTWAPNGRLLMFYKQDRPTGQGSG-KVGLFSVDILGTNLREIITPMNASDPAWSPLIP 447
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2S6RXL8_9PROT (Tol-Pal system protein TolB n=5 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A2S6RXL8_9PROT) HSP 1 Score: 167 bits (423), Expect = 1.780e-47 Identity = 78/116 (67.24%), Postives = 91/116 (78.45%), Query Frame = 1
Query: 25 GNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPLIP 372
G +RIS+G+G+YATPVWSPRGD IAFT +KGVF IGVMRPDGS ER + + YL EGPTWAPNGRVLMF+R+ + SD G V L S+D+TG NER V TP+ SDPAWSPLIP
Sbjct: 345 GEEQRISWGDGKYATPVWSPRGDWIAFTNINKGVFSIGVMRPDGSDERRIAKGYLTEGPTWAPNGRVLMFFREDQP-SDDMAGDVRLYSVDITGTNEREVITPMDASDPAWSPLIP 459
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Match: A0A2S6QL81_9PROT (Tol-Pal system protein TolB n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QL81_9PROT) HSP 1 Score: 165 bits (418), Expect = 1.130e-46 Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = 1
Query: 34 KRISFGEG-RYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSGERLLTQSYLVEGPTWAPNGRVLMFYRQKRSKSDGSGGQVELVSIDLTGYNERIVTTPLQGSDPAWSPL 366
+RISF G RY TPVWSPRGDLIAFTKF KG F+IGVM+ DGSGERLLT+ ++VEGPTWAPNGRVLMFYRQ+R G G L SIDLTG+NER + TP SDPAWS L
Sbjct: 341 RRISFKRGGRYGTPVWSPRGDLIAFTKFYKGSFHIGVMKSDGSGERLLTKGFIVEGPTWAPNGRVLMFYRQQRQNEKGEGSNPRLYSIDLTGHNEREIITPEDASDPAWSRL 452 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106540.1017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig106540.1017.1 >prot_Ecto-sp8_S_contig106540.1017.1 ID=prot_Ecto-sp8_S_contig106540.1017.1|Name=mRNA_Ecto-sp8_S_contig106540.1017.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=122bp MNADGGNVKRISFGEGRYATPVWSPRGDLIAFTKFSKGVFYIGVMRPDGSback to top mRNA from alignment at Ecto-sp8_S_contig106540:127..501- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig106540.1017.1 ID=mRNA_Ecto-sp8_S_contig106540.1017.1|Name=mRNA_Ecto-sp8_S_contig106540.1017.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106540:127..501- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106540:127..501- >mRNA_Ecto-sp8_S_contig106540.1017.1 ID=mRNA_Ecto-sp8_S_contig106540.1017.1|Name=mRNA_Ecto-sp8_S_contig106540.1017.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106540:127..501- (Ectocarpus species8 EcLAC_412)back to top |