mRNA_Ecto-sp8_S_contig106525.1015.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106525.1015.1
Unique NamemRNA_Ecto-sp8_S_contig106525.1015.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A6A4RCV2_9RHOB (TRAP transporter large permease subunit n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A6A4RCV2_9RHOB)

HSP 1 Score: 253 bits (645), Expect = 2.600e-79
Identity = 134/166 (80.72%), Postives = 151/166 (90.96%), Query Frame = 1
Query:    4 SLLAGALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
            S + GA YA+M +VG ++I  AL AALR++V+ +A+ STLTMTSMIFATIL+AGIFSLVFIGLGGEERVA +L++MPG A GAL+FCM+FIF LGFFLDFVEISVIVLPLVTPTLILMGHDPIWLG+LIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTG IYAGV
Sbjct:  314 SYVGGAAYAVMTLVGIISIAYALNAALRQKVLHEAVNSTLTMTSMIFATILAAGIFSLVFIGLGGEERVAALLSNMPGGANGALLFCMIFIFFLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGVLIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGHIYAGV 479          
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A1Y5TPW7_9RHOB (Sialic acid TRAP transporter permease protein SiaT n=10 Tax=Rhodobacterales TaxID=204455 RepID=A0A1Y5TPW7_9RHOB)

HSP 1 Score: 251 bits (641), Expect = 1.260e-78
Identity = 131/162 (80.86%), Postives = 149/162 (91.98%), Query Frame = 1
Query:   16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
            G  YA + VVG V++ LALRAAL+++VVQ+A+ ST+TMTSMIFATI++AG FSLVFIGLGGEERVA IL+ MPG A GAL+FCM+ IF+LGFFLDFVEISVIVLPLVTPTLIL+GHDPIWLG+LIA+NLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV
Sbjct:  326 GIFYAALAVVGGVSVLLALRAALKKKVVQEAVKSTMTMTSMIFATIIAAGFFSLVFIGLGGEERVAGILSEMPGGANGALVFCMVVIFILGFFLDFVEISVIVLPLVTPTLILLGHDPIWLGVLIAVNLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 487          
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A345RBY5_9RHOB (Tripartite transporter n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A345RBY5_9RHOB)

HSP 1 Score: 249 bits (635), Expect = 9.960e-78
Identity = 132/162 (81.48%), Postives = 147/162 (90.74%), Query Frame = 1
Query:   16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
            G  YA + VVG VA+ LALR+AL+E++V +A+ STLTMTSMIFATIL+AGIFSLVFIGLGGEERV  IL++MPG ATGAL+FCM+FIF LGF LDFVEISVIVLPLVTP LIL+GHDPIWLG+LIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTG IYAGV
Sbjct:  326 GVFYAGLAVVGMVAVILALRSALKEKIVHEAINSTLTMTSMIFATILAAGIFSLVFIGLGGEERVVGILSNMPGGATGALVFCMIFIFFLGFXLDFVEISVIVLPLVTPILILLGHDPIWLGVLIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGHIYAGV 487          
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A1I6YXY5_9RHOB (TRAP transporter, DctM subunit n=1 Tax=Sedimentitalea nanhaiensis TaxID=999627 RepID=A0A1I6YXY5_9RHOB)

HSP 1 Score: 248 bits (634), Expect = 1.410e-77
Identity = 135/162 (83.33%), Postives = 147/162 (90.74%), Query Frame = 1
Query:   16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
            GA Y ++ V+G VA+  ALRA LR RVVQ+ALTSTLTMT+MIFATIL+AG+FSLVF+GLGGEERVA IL +MPG ATGALIF M+FIFVLG FLDFVEISVIVLPLVTP LILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAP E+TTGQIYAGV
Sbjct:  326 GAFYVVLTVLGGVAVIGALRAGLRGRVVQEALTSTLTMTAMIFATILAAGMFSLVFVGLGGEERVAEILGAMPGGATGALIFVMIFIFVLGCFLDFVEISVIVLPLVTPPLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPPEITTGQIYAGV 487          
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A9D0V3_HOEPD (TRAP-type mannitol/chloroaromatic compound transport system, large permease component n=1 Tax=Hoeflea phototrophica (strain DSM 17068 / NCIMB 14078 / DFL-43) TaxID=411684 RepID=A9D0V3_HOEPD)

HSP 1 Score: 248 bits (634), Expect = 1.410e-77
Identity = 129/163 (79.14%), Postives = 147/163 (90.18%), Query Frame = 1
Query:   13 AGALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
            AG +Y ++ ++GAVAI  ALRAA RE+V+  A+ STLTMT+MIFATIL+AGIFSLVFIGLGGEERVA IL+ MPG ATGAL+FCM  +FVLGFFLDFVEISVIVLPL+ P LILMGHDPIWLG+L+AINLQTSFLTPPFGFSLFYLRGAAPKE++TGQIYAGV
Sbjct:  325 AGGIYVVLTIIGAVAIFYALRAAFREKVIHAAVNSTLTMTAMIFATILAAGIFSLVFIGLGGEERVAEILSEMPGGATGALLFCMALVFVLGFFLDFVEISVIVLPLIAPPLILMGHDPIWLGVLLAINLQTSFLTPPFGFSLFYLRGAAPKEISTGQIYAGV 487          
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A2U2CZY9_9RHOB (Tripartite transporter n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A2U2CZY9_9RHOB)

HSP 1 Score: 247 bits (630), Expect = 5.440e-77
Identity = 129/162 (79.63%), Postives = 148/162 (91.36%), Query Frame = 1
Query:   16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
            G  Y  + ++G +A+ LALRAAL + VVQ+A+ STLTMTSMIFATIL+AG+FSLVFIGLGGEERVA+IL +MPG ATGAL+FCM+ IF+LGFFLDFVEISVIVLPL+TP+LI+MGHDPIWLG+LIAINLQTSFLTPPFGFSLFYLRGAAPK VTTGQIYAGV
Sbjct:  325 GLFYVGLAILGGLAVLLALRAALSKNVVQEAIGSTLTMTSMIFATILAAGVFSLVFIGLGGEERVADILGNMPGGATGALVFCMIVIFILGFFLDFVEISVIVLPLITPSLIVMGHDPIWLGVLIAINLQTSFLTPPFGFSLFYLRGAAPKSVTTGQIYAGV 486          
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A1H8RC92_9RHOB (TRAP transporter, DctM subunit n=1 Tax=Salinihabitans flavidus TaxID=569882 RepID=A0A1H8RC92_9RHOB)

HSP 1 Score: 245 bits (625), Expect = 3.120e-76
Identity = 130/163 (79.75%), Postives = 146/163 (89.57%), Query Frame = 1
Query:   13 AGALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
            AGA Y  + ++G VA+ LALR  LRERV+ +AL STLTMT+MIFATIL+AGIFSLVFIGLGGEERVA IL+ +PG ATGAL+F M+FIF+LGFFLDFVEISVIVLPLVTPTLI+MGHDPIWLG+LIAINLQTSFLTPPFGFSLFYLRGAAP+EV T QIY GV
Sbjct:  325 AGAAYIALALIGLVAVALALRGMLRERVIHEALNSTLTMTAMIFATILAAGIFSLVFIGLGGEERVAAILSQLPGGATGALVFSMIFIFILGFFLDFVEISVIVLPLVTPTLIVMGHDPIWLGVLIAINLQTSFLTPPFGFSLFYLRGAAPEEVRTTQIYRGV 487          
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A5P3A8D9_9RHOB (Neu5Ac permease n=3 Tax=Roseovarius TaxID=74030 RepID=A0A5P3A8D9_9RHOB)

HSP 1 Score: 245 bits (625), Expect = 3.120e-76
Identity = 132/162 (81.48%), Postives = 145/162 (89.51%), Query Frame = 1
Query:   16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
            GALYA + V G VA+ LALR  LRERV+ DA  STLTMT+MIFATIL+AG+FSLVFIGLGGEERVA++L ++PG  TGAL+F MLF+FVLGFFLDFVEISVIVLPLV PTLILMGHDP+WLGILIAINLQTSFLTPPFGFSLFYLRGAAP EVTTG IYAGV
Sbjct:  326 GALYAGLAVAGVVAVLLALRGTLRERVMHDAAYSTLTMTAMIFATILAAGMFSLVFIGLGGEERVAHLLENLPGGPTGALLFTMLFVFVLGFFLDFVEISVIVLPLVMPTLILMGHDPVWLGILIAINLQTSFLTPPFGFSLFYLRGAAPPEVTTGHIYAGV 487          
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A2E1XSY6_9HYPH (Tripartite transporter n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A2E1XSY6_9HYPH)

HSP 1 Score: 244 bits (624), Expect = 4.290e-76
Identity = 128/162 (79.01%), Postives = 145/162 (89.51%), Query Frame = 1
Query:   16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
            GA+Y L+ ++GA AI ++LR ALR + VQ+A  STLTMT+MIFATIL+AGIFSLVFIGLGGEERVA IL SMPG   GAL+FCM+ +FV+GFFLDFVEISVIVLPL+TPTLILMGHDPIWLGIL+AINLQTSFLTPPFGFSLFYLRGAAPKE+TTG IY GV
Sbjct:  325 GAVYILLALLGAAAILVSLRTALRNQTVQEAAASTLTMTAMIFATILAAGIFSLVFIGLGGEERVAEILKSMPGGPAGALLFCMILVFVMGFFLDFVEISVIVLPLITPTLILMGHDPIWLGILLAINLQTSFLTPPFGFSLFYLRGAAPKEITTGHIYRGV 486          
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A0P1HAF0_9RHOB (Neu5Ac permease n=17 Tax=Rhodobacterales TaxID=204455 RepID=A0A0P1HAF0_9RHOB)

HSP 1 Score: 243 bits (621), Expect = 1.240e-75
Identity = 128/163 (78.53%), Postives = 147/163 (90.18%), Query Frame = 1
Query:   13 AGALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
            AG  YAL+   GA+A+  ALR+ L++R++ +A+TST TMT+MIFATIL+AG+FSLVFIGLGGEERVA+IL +MPG  +GAL+FCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDP+WLGILIAINLQTSFLTPPFGFSLFYLRGAAP+EVTT  IY GV
Sbjct:  325 AGLFYALLTAAGAIAVIAALRSGLKKRILHEAVTSTATMTAMIFATILAAGMFSLVFIGLGGEERVAHILGNMPGGPSGALLFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPVWLGILIAINLQTSFLTPPFGFSLFYLRGAAPEEVTTRHIYQGV 487          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4RCV2_9RHOB2.600e-7980.72TRAP transporter large permease subunit n=4 Tax=Rh... [more]
A0A1Y5TPW7_9RHOB1.260e-7880.86Sialic acid TRAP transporter permease protein SiaT... [more]
A0A345RBY5_9RHOB9.960e-7881.48Tripartite transporter n=2 Tax=Rhodobacterales Tax... [more]
A0A1I6YXY5_9RHOB1.410e-7783.33TRAP transporter, DctM subunit n=1 Tax=Sedimentita... [more]
A9D0V3_HOEPD1.410e-7779.14TRAP-type mannitol/chloroaromatic compound transpo... [more]
A0A2U2CZY9_9RHOB5.440e-7779.63Tripartite transporter n=2 Tax=Rhodobacterales Tax... [more]
A0A1H8RC92_9RHOB3.120e-7679.75TRAP transporter, DctM subunit n=1 Tax=Salinihabit... [more]
A0A5P3A8D9_9RHOB3.120e-7681.48Neu5Ac permease n=3 Tax=Roseovarius TaxID=74030 Re... [more]
A0A2E1XSY6_9HYPH4.290e-7679.01Tripartite transporter n=1 Tax=Phyllobacteriaceae ... [more]
A0A0P1HAF0_9RHOB1.240e-7578.53Neu5Ac permease n=17 Tax=Rhodobacterales TaxID=204... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106525contigEcto-sp8_S_contig106525:1..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score249.2
Seed ortholog evalue1.3e-63
Seed eggNOG ortholog411684.HPDFL43_02680
Preferred namegtrB
Model size501
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.TRAP-type mannitol chloroaromatic compound transport system large permease component
EggNOG OGs1R4MZ@1224,2TQNR@28211,43GU8@69277,COG4664@1,COG4664@2
Cds size501
COG Functional cat.Q
Best tax levelPhyllobacteriaceae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.9533193-CDS-Ecto-sp8_S_contig106525:0..5011681143161.9533193-CDS-Ecto-sp8_S_contig106525:0..501Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106525 1..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106525.1015.1prot_Ecto-sp8_S_contig106525.1015.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106525 1..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106525.1015.1

>prot_Ecto-sp8_S_contig106525.1015.1 ID=prot_Ecto-sp8_S_contig106525.1015.1|Name=mRNA_Ecto-sp8_S_contig106525.1015.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=167bp
ASLLAGALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFAT
ILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLD
FVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYL
RGAAPKEVTTGQIYAGV
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mRNA from alignment at Ecto-sp8_S_contig106525:1..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106525.1015.1 ID=mRNA_Ecto-sp8_S_contig106525.1015.1|Name=mRNA_Ecto-sp8_S_contig106525.1015.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106525:1..501- (Ectocarpus species8 EcLAC_412)
GCTTCCCTGCTGGCGGGTGCGCTGTATGCATTGATGGTGGTCGTTGGTGC GGTCGCAATCGGATTGGCACTGCGCGCCGCCCTGCGCGAGCGTGTCGTGC AAGACGCGCTGACCTCCACGCTCACAATGACATCAATGATTTTCGCGACG ATCCTGTCGGCCGGGATCTTCTCGCTGGTCTTTATCGGGCTTGGAGGTGA AGAGCGTGTCGCCAACATACTGAACAGCATGCCCGGCGAGGCTACCGGCG CATTGATCTTTTGTATGCTGTTCATCTTCGTCCTGGGCTTCTTTCTCGAT TTCGTCGAGATTTCAGTCATCGTACTGCCGCTGGTAACACCAACGCTGAT CCTCATGGGGCACGACCCGATCTGGCTTGGCATTCTCATCGCGATCAATC TGCAAACGAGCTTTCTGACGCCGCCCTTCGGTTTCTCGCTGTTTTATCTT CGCGGCGCCGCTCCCAAGGAAGTGACGACGGGCCAGATCTATGCCGGCGT T
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106525:1..501-

>mRNA_Ecto-sp8_S_contig106525.1015.1 ID=mRNA_Ecto-sp8_S_contig106525.1015.1|Name=mRNA_Ecto-sp8_S_contig106525.1015.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106525:1..501- (Ectocarpus species8 EcLAC_412)
GCTTCCCTGCTGGCGGGTGCGCTGTATGCATTGATGGTGGTCGTTGGTGC
GGTCGCAATCGGATTGGCACTGCGCGCCGCCCTGCGCGAGCGTGTCGTGC
AAGACGCGCTGACCTCCACGCTCACAATGACATCAATGATTTTCGCGACG
ATCCTGTCGGCCGGGATCTTCTCGCTGGTCTTTATCGGGCTTGGAGGTGA
AGAGCGTGTCGCCAACATACTGAACAGCATGCCCGGCGAGGCTACCGGCG
CATTGATCTTTTGTATGCTGTTCATCTTCGTCCTGGGCTTCTTTCTCGAT
TTCGTCGAGATTTCAGTCATCGTACTGCCGCTGGTAACACCAACGCTGAT
CCTCATGGGGCACGACCCGATCTGGCTTGGCATTCTCATCGCGATCAATC
TGCAAACGAGCTTTCTGACGCCGCCCTTCGGTTTCTCGCTGTTTTATCTT
CGCGGCGCCGCTCCCAAGGAAGTGACGACGGGCCAGATCTATGCCGGCGT
T
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