mRNA_Ecto-sp8_S_contig106525.1015.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A6A4RCV2_9RHOB (TRAP transporter large permease subunit n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A6A4RCV2_9RHOB) HSP 1 Score: 253 bits (645), Expect = 2.600e-79 Identity = 134/166 (80.72%), Postives = 151/166 (90.96%), Query Frame = 1
Query: 4 SLLAGALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
S + GA YA+M +VG ++I AL AALR++V+ +A+ STLTMTSMIFATIL+AGIFSLVFIGLGGEERVA +L++MPG A GAL+FCM+FIF LGFFLDFVEISVIVLPLVTPTLILMGHDPIWLG+LIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTG IYAGV
Sbjct: 314 SYVGGAAYAVMTLVGIISIAYALNAALRQKVLHEAVNSTLTMTSMIFATILAAGIFSLVFIGLGGEERVAALLSNMPGGANGALLFCMIFIFFLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGVLIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGHIYAGV 479
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A1Y5TPW7_9RHOB (Sialic acid TRAP transporter permease protein SiaT n=10 Tax=Rhodobacterales TaxID=204455 RepID=A0A1Y5TPW7_9RHOB) HSP 1 Score: 251 bits (641), Expect = 1.260e-78 Identity = 131/162 (80.86%), Postives = 149/162 (91.98%), Query Frame = 1
Query: 16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
G YA + VVG V++ LALRAAL+++VVQ+A+ ST+TMTSMIFATI++AG FSLVFIGLGGEERVA IL+ MPG A GAL+FCM+ IF+LGFFLDFVEISVIVLPLVTPTLIL+GHDPIWLG+LIA+NLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV
Sbjct: 326 GIFYAALAVVGGVSVLLALRAALKKKVVQEAVKSTMTMTSMIFATIIAAGFFSLVFIGLGGEERVAGILSEMPGGANGALVFCMVVIFILGFFLDFVEISVIVLPLVTPTLILLGHDPIWLGVLIAVNLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 487
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A345RBY5_9RHOB (Tripartite transporter n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A345RBY5_9RHOB) HSP 1 Score: 249 bits (635), Expect = 9.960e-78 Identity = 132/162 (81.48%), Postives = 147/162 (90.74%), Query Frame = 1
Query: 16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
G YA + VVG VA+ LALR+AL+E++V +A+ STLTMTSMIFATIL+AGIFSLVFIGLGGEERV IL++MPG ATGAL+FCM+FIF LGF LDFVEISVIVLPLVTP LIL+GHDPIWLG+LIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTG IYAGV
Sbjct: 326 GVFYAGLAVVGMVAVILALRSALKEKIVHEAINSTLTMTSMIFATILAAGIFSLVFIGLGGEERVVGILSNMPGGATGALVFCMIFIFFLGFXLDFVEISVIVLPLVTPILILLGHDPIWLGVLIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGHIYAGV 487
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A1I6YXY5_9RHOB (TRAP transporter, DctM subunit n=1 Tax=Sedimentitalea nanhaiensis TaxID=999627 RepID=A0A1I6YXY5_9RHOB) HSP 1 Score: 248 bits (634), Expect = 1.410e-77 Identity = 135/162 (83.33%), Postives = 147/162 (90.74%), Query Frame = 1
Query: 16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
GA Y ++ V+G VA+ ALRA LR RVVQ+ALTSTLTMT+MIFATIL+AG+FSLVF+GLGGEERVA IL +MPG ATGALIF M+FIFVLG FLDFVEISVIVLPLVTP LILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAP E+TTGQIYAGV
Sbjct: 326 GAFYVVLTVLGGVAVIGALRAGLRGRVVQEALTSTLTMTAMIFATILAAGMFSLVFVGLGGEERVAEILGAMPGGATGALIFVMIFIFVLGCFLDFVEISVIVLPLVTPPLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPPEITTGQIYAGV 487
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A9D0V3_HOEPD (TRAP-type mannitol/chloroaromatic compound transport system, large permease component n=1 Tax=Hoeflea phototrophica (strain DSM 17068 / NCIMB 14078 / DFL-43) TaxID=411684 RepID=A9D0V3_HOEPD) HSP 1 Score: 248 bits (634), Expect = 1.410e-77 Identity = 129/163 (79.14%), Postives = 147/163 (90.18%), Query Frame = 1
Query: 13 AGALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
AG +Y ++ ++GAVAI ALRAA RE+V+ A+ STLTMT+MIFATIL+AGIFSLVFIGLGGEERVA IL+ MPG ATGAL+FCM +FVLGFFLDFVEISVIVLPL+ P LILMGHDPIWLG+L+AINLQTSFLTPPFGFSLFYLRGAAPKE++TGQIYAGV
Sbjct: 325 AGGIYVVLTIIGAVAIFYALRAAFREKVIHAAVNSTLTMTAMIFATILAAGIFSLVFIGLGGEERVAEILSEMPGGATGALLFCMALVFVLGFFLDFVEISVIVLPLIAPPLILMGHDPIWLGVLLAINLQTSFLTPPFGFSLFYLRGAAPKEISTGQIYAGV 487
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A2U2CZY9_9RHOB (Tripartite transporter n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A2U2CZY9_9RHOB) HSP 1 Score: 247 bits (630), Expect = 5.440e-77 Identity = 129/162 (79.63%), Postives = 148/162 (91.36%), Query Frame = 1
Query: 16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
G Y + ++G +A+ LALRAAL + VVQ+A+ STLTMTSMIFATIL+AG+FSLVFIGLGGEERVA+IL +MPG ATGAL+FCM+ IF+LGFFLDFVEISVIVLPL+TP+LI+MGHDPIWLG+LIAINLQTSFLTPPFGFSLFYLRGAAPK VTTGQIYAGV
Sbjct: 325 GLFYVGLAILGGLAVLLALRAALSKNVVQEAIGSTLTMTSMIFATILAAGVFSLVFIGLGGEERVADILGNMPGGATGALVFCMIVIFILGFFLDFVEISVIVLPLITPSLIVMGHDPIWLGVLIAINLQTSFLTPPFGFSLFYLRGAAPKSVTTGQIYAGV 486
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A1H8RC92_9RHOB (TRAP transporter, DctM subunit n=1 Tax=Salinihabitans flavidus TaxID=569882 RepID=A0A1H8RC92_9RHOB) HSP 1 Score: 245 bits (625), Expect = 3.120e-76 Identity = 130/163 (79.75%), Postives = 146/163 (89.57%), Query Frame = 1
Query: 13 AGALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
AGA Y + ++G VA+ LALR LRERV+ +AL STLTMT+MIFATIL+AGIFSLVFIGLGGEERVA IL+ +PG ATGAL+F M+FIF+LGFFLDFVEISVIVLPLVTPTLI+MGHDPIWLG+LIAINLQTSFLTPPFGFSLFYLRGAAP+EV T QIY GV
Sbjct: 325 AGAAYIALALIGLVAVALALRGMLRERVIHEALNSTLTMTAMIFATILAAGIFSLVFIGLGGEERVAAILSQLPGGATGALVFSMIFIFILGFFLDFVEISVIVLPLVTPTLIVMGHDPIWLGVLIAINLQTSFLTPPFGFSLFYLRGAAPEEVRTTQIYRGV 487
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A5P3A8D9_9RHOB (Neu5Ac permease n=3 Tax=Roseovarius TaxID=74030 RepID=A0A5P3A8D9_9RHOB) HSP 1 Score: 245 bits (625), Expect = 3.120e-76 Identity = 132/162 (81.48%), Postives = 145/162 (89.51%), Query Frame = 1
Query: 16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
GALYA + V G VA+ LALR LRERV+ DA STLTMT+MIFATIL+AG+FSLVFIGLGGEERVA++L ++PG TGAL+F MLF+FVLGFFLDFVEISVIVLPLV PTLILMGHDP+WLGILIAINLQTSFLTPPFGFSLFYLRGAAP EVTTG IYAGV
Sbjct: 326 GALYAGLAVAGVVAVLLALRGTLRERVMHDAAYSTLTMTAMIFATILAAGMFSLVFIGLGGEERVAHLLENLPGGPTGALLFTMLFVFVLGFFLDFVEISVIVLPLVMPTLILMGHDPVWLGILIAINLQTSFLTPPFGFSLFYLRGAAPPEVTTGHIYAGV 487
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A2E1XSY6_9HYPH (Tripartite transporter n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A2E1XSY6_9HYPH) HSP 1 Score: 244 bits (624), Expect = 4.290e-76 Identity = 128/162 (79.01%), Postives = 145/162 (89.51%), Query Frame = 1
Query: 16 GALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
GA+Y L+ ++GA AI ++LR ALR + VQ+A STLTMT+MIFATIL+AGIFSLVFIGLGGEERVA IL SMPG GAL+FCM+ +FV+GFFLDFVEISVIVLPL+TPTLILMGHDPIWLGIL+AINLQTSFLTPPFGFSLFYLRGAAPKE+TTG IY GV
Sbjct: 325 GAVYILLALLGAAAILVSLRTALRNQTVQEAAASTLTMTAMIFATILAAGIFSLVFIGLGGEERVAEILKSMPGGPAGALLFCMILVFVMGFFLDFVEISVIVLPLITPTLILMGHDPIWLGILLAINLQTSFLTPPFGFSLFYLRGAAPKEITTGHIYRGV 486
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Match: A0A0P1HAF0_9RHOB (Neu5Ac permease n=17 Tax=Rhodobacterales TaxID=204455 RepID=A0A0P1HAF0_9RHOB) HSP 1 Score: 243 bits (621), Expect = 1.240e-75 Identity = 128/163 (78.53%), Postives = 147/163 (90.18%), Query Frame = 1
Query: 13 AGALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATILSAGIFSLVFIGLGGEERVANILNSMPGEATGALIFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPIWLGILIAINLQTSFLTPPFGFSLFYLRGAAPKEVTTGQIYAGV 501
AG YAL+ GA+A+ ALR+ L++R++ +A+TST TMT+MIFATIL+AG+FSLVFIGLGGEERVA+IL +MPG +GAL+FCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDP+WLGILIAINLQTSFLTPPFGFSLFYLRGAAP+EVTT IY GV
Sbjct: 325 AGLFYALLTAAGAIAVIAALRSGLKKRILHEAVTSTATMTAMIFATILAAGMFSLVFIGLGGEERVAHILGNMPGGPSGALLFCMLFIFVLGFFLDFVEISVIVLPLVTPTLILMGHDPVWLGILIAINLQTSFLTPPFGFSLFYLRGAAPEEVTTRHIYQGV 487 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106525.1015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig106525.1015.1 >prot_Ecto-sp8_S_contig106525.1015.1 ID=prot_Ecto-sp8_S_contig106525.1015.1|Name=mRNA_Ecto-sp8_S_contig106525.1015.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=167bp ASLLAGALYALMVVVGAVAIGLALRAALRERVVQDALTSTLTMTSMIFATback to top mRNA from alignment at Ecto-sp8_S_contig106525:1..501- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig106525.1015.1 ID=mRNA_Ecto-sp8_S_contig106525.1015.1|Name=mRNA_Ecto-sp8_S_contig106525.1015.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106525:1..501- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106525:1..501- >mRNA_Ecto-sp8_S_contig106525.1015.1 ID=mRNA_Ecto-sp8_S_contig106525.1015.1|Name=mRNA_Ecto-sp8_S_contig106525.1015.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106525:1..501- (Ectocarpus species8 EcLAC_412)back to top |