mRNA_Ecto-sp8_S_contig10651.1014.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10651.1014.1
Unique NamemRNA_Ecto-sp8_S_contig10651.1014.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Match: D8LP58_ECTSI (Helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP58_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 8.990e-39
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 1
Query:    1 MDLLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSHHEPCEHKHVDVYIYQSVFVTKQ 207
            MDLLIISKAGSVGLDLQCTSKVFMFDLWWN+PQMNQVIGRAIRFKSHHEPC+HKHVDVY+YQSVFVTKQ
Sbjct:  498 MDLLIISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHHEPCKHKHVDVYVYQSVFVTKQ 566          
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Match: Q8QNN8_ESV1K (EsV-1-23 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN8_ESV1K)

HSP 1 Score: 144 bits (362), Expect = 9.200e-39
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 1
Query:    1 MDLLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSHHEPCEHKHVDVYIYQSVFVTKQ 207
            MDLLIISKAGSVGLDLQCTSKVFMFDLWWN+PQMNQVIGRAIRFKSHHEPC+HKHVDVY+YQSVFVTKQ
Sbjct:  501 MDLLIISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHHEPCKHKHVDVYVYQSVFVTKQ 569          
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Match: A0A6C0F7I3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F7I3_9ZZZZ)

HSP 1 Score: 63.5 bits (153), Expect = 3.960e-10
Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    4 DLLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSHHE-PCEHKHVDVYIYQSVF 195
            D+L +S++GS GLDL+ T +V + + +WN  Q++QVIGRA+R+KSH   P   K+VD+Y + SV+
Sbjct:  372 DVLCLSRSGSEGLDLKRTREVHIMEPFWNNSQLDQVIGRAVRYKSHENMPNNEKNVDIYHWYSVY 436          
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Match: A0A6N1NTM0_9VIRU (Putative ATP-dependent RNA helicase n=2 Tax=Tupanvirus TaxID=2094720 RepID=A0A6N1NTM0_9VIRU)

HSP 1 Score: 62.8 bits (151), Expect = 7.410e-10
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    7 LLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSHHE-PCEHKHVDVYIYQSVF 195
            +L+IS AGS  LDL+ T ++ + +  WN  ++ QVIGRAIR+KSH   P E +HVD+Y + S+F
Sbjct:  337 VLLISSAGSESLDLKNTRQIHIMEPHWNESRIQQVIGRAIRYKSHENLPLEQRHVDIYRWVSIF 400          
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Match: A0A2L2DMT7_MIMIV (ATP-dependent RNA helicase n=8 Tax=Mimiviridae TaxID=549779 RepID=A0A2L2DMT7_MIMIV)

HSP 1 Score: 59.3 bits (142), Expect = 1.230e-8
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    7 LLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSHHE-PCEHKHVDVYIYQSVF 195
            +L+IS AGS  LDL+ T ++ + +  WN  ++ QVIGRAIR+KSH + P   ++VD+Y + SVF
Sbjct:  337 VLLISSAGSESLDLKNTRQIHIMEPHWNESKITQVIGRAIRYKSHEKLPVNERNVDIYRWASVF 400          
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Match: A0A2E5YWR4_9EURY (Helicase ATP-binding domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5YWR4_9EURY)

HSP 1 Score: 58.9 bits (141), Expect = 1.700e-8
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 MDLLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSHHE-PCEHKHVDVYIYQSV 192
            +++L+IS A   GLDL+ T+ V + +  WN  +++QVIGRAIRFKSHH  P   ++V+VY + SV
Sbjct:  394 VEVLLISGAAGFGLDLKRTASVHICEPNWNKAKIDQVIGRAIRFKSHHSLPVSERYVNVYYWLSV 458          
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Match: A0A481YS24_9VIRU (DEAD/SNF2-like helicase n=1 Tax=Marseillevirus LCMAC101 TaxID=2506602 RepID=A0A481YS24_9VIRU)

HSP 1 Score: 57.8 bits (138), Expect = 4.410e-8
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 MDLLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSH-HEPCEHKHVDV 174
            +D+++ISKAG V LDL    KV M +  WN P  +QV GRAIRFKSH H P   ++V+V
Sbjct:  788 IDIMLISKAGGVALDLVGVRKVIMLESQWNRPGEDQVKGRAIRFKSHYHLPLSKQNVEV 846          
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Match: A0A6C0BVA3_9ZZZZ (Helicase ATP-binding domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BVA3_9ZZZZ)

HSP 1 Score: 57.8 bits (138), Expect = 4.430e-8
Identity = 26/64 (40.62%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    7 LLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSHHE-PCEHKHVDVYIYQSVF 195
            ++IIS AGS G+D +   +V + D W+N+ ++ Q+IGR +RF SH + P E ++V++Y++ S F
Sbjct:  662 VVIISSAGSEGIDFKYIRQVHILDPWFNINRIEQIIGRGVRFCSHKDLPIEKRNVEIYLHASTF 725          
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Match: A0A2E7GAT7_9PROT (Helicase ATP-binding domain-containing protein n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=A0A2E7GAT7_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 6.060e-8
Identity = 28/62 (45.16%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    7 LLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSHHE-PCEHKHVDVYIYQS 189
            ++IISKAGS GLD +   +V + + W+N+ +M+Q+IGRA+R KSH   P   ++V++Y+Y S
Sbjct:  676 VIIISKAGSEGLDFKNIRQVHILEPWFNINRMDQIIGRAVRNKSHCSLPYNKRNVEIYLYGS 737          
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Match: A0A6C0CVE0_9ZZZZ (Helicase ATP-binding domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CVE0_9ZZZZ)

HSP 1 Score: 57.4 bits (137), Expect = 6.070e-8
Identity = 25/63 (39.68%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    7 LLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSHHE-PCEHKHVDVYIYQSV 192
            +++IS+AGS G+DL+C  +V + D W+N+ ++ Q+IGRA+R  SH E   E ++V++++Y ++
Sbjct:  864 VVLISRAGSEGIDLKCIRQVHIMDPWYNMNRVEQIIGRAVRNSSHKELEFEKRNVEIFMYGTI 926          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10651.1014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP58_ECTSI8.990e-3995.65Helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNN8_ESV1K9.200e-3995.65EsV-1-23 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
A0A6C0F7I3_9ZZZZ3.960e-1047.69Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6N1NTM0_9VIRU7.410e-1048.44Putative ATP-dependent RNA helicase n=2 Tax=Tupanv... [more]
A0A2L2DMT7_MIMIV1.230e-846.88ATP-dependent RNA helicase n=8 Tax=Mimiviridae Tax... [more]
A0A2E5YWR4_9EURY1.700e-847.69Helicase ATP-binding domain-containing protein n=1... [more]
A0A481YS24_9VIRU4.410e-852.54DEAD/SNF2-like helicase n=1 Tax=Marseillevirus LCM... [more]
A0A6C0BVA3_9ZZZZ4.430e-840.63Helicase ATP-binding domain-containing protein n=1... [more]
A0A2E7GAT7_9PROT6.060e-845.16Helicase ATP-binding domain-containing protein n=1... [more]
A0A6C0CVE0_9ZZZZ6.070e-839.68Helicase ATP-binding domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10651contigEcto-sp8_S_contig10651:891..1097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViruses
Stop0
Start1
Seed ortholog score145.6
Seed ortholog evalue8.6e-33
Seed eggNOG ortholog654926.Q8QNN8_ESV1K
Model size207
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.N-methyltransferase activity
EggNOG OGs4QB5I@10239,4QUT2@35237
Cds size207
COG Functional cat.S
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.9239948-CDS-Ecto-sp8_S_contig10651:890..10971681143161.9239948-CDS-Ecto-sp8_S_contig10651:890..1097Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10651 891..1097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10651.1014.1prot_Ecto-sp8_S_contig10651.1014.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10651 891..1097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10651.1014.1

>prot_Ecto-sp8_S_contig10651.1014.1 ID=prot_Ecto-sp8_S_contig10651.1014.1|Name=mRNA_Ecto-sp8_S_contig10651.1014.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=69bp
MDLLIISKAGSVGLDLQCTSKVFMFDLWWNVPQMNQVIGRAIRFKSHHEP
CEHKHVDVYIYQSVFVTKQ
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mRNA from alignment at Ecto-sp8_S_contig10651:891..1097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10651.1014.1 ID=mRNA_Ecto-sp8_S_contig10651.1014.1|Name=mRNA_Ecto-sp8_S_contig10651.1014.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10651:891..1097+ (Ectocarpus species8 EcLAC_412)
ATGGACCTGCTTATCATTAGCAAGGCTGGGAGCGTCGGTCTAGACCTCCA GTGTACGTCAAAAGTTTTTATGTTTGACCTTTGGTGGAACGTCCCCCAGA TGAACCAGGTCATCGGGCGCGCAATCAGGTTCAAAAGTCACCACGAACCA TGTGAACACAAACACGTGGACGTGTATATCTACCAGTCCGTGTTTGTGAC CAAACAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10651:891..1097+

>mRNA_Ecto-sp8_S_contig10651.1014.1 ID=mRNA_Ecto-sp8_S_contig10651.1014.1|Name=mRNA_Ecto-sp8_S_contig10651.1014.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10651:891..1097+ (Ectocarpus species8 EcLAC_412)
ATGGACCTGCTTATCATTAGCAAGGCTGGGAGCGTCGGTCTAGACCTCCA
GTGTACGTCAAAAGTTTTTATGTTTGACCTTTGGTGGAACGTCCCCCAGA
TGAACCAGGTCATCGGGCGCGCAATCAGGTTCAAAAGTCACCACGAACCA
TGTGAACACAAACACGTGGACGTGTATATCTACCAGTCCGTGTTTGTGAC
CAAACAA
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