mRNA_Ecto-sp8_S_contig106467.1008.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106467.1008.1
Unique NamemRNA_Ecto-sp8_S_contig106467.1008.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106467.1008.1 vs. uniprot
Match: A0A0P1ILP5_9RHOB (tRNA(1-methyladenosine) methyltransferase n=3 Tax=Shimia thalassica TaxID=1715693 RepID=A0A0P1ILP5_9RHOB)

HSP 1 Score: 57.0 bits (136), Expect = 1.880e-6
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 1 
Query:    1 LPNGYEYVGEWVDGDIKGKGQARF 72
            LPNGYEYVGEWVDGDIKGKGQARF
Sbjct:   57 LPNGYEYVGEWVDGDIKGKGQARF 80
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BLAST of mRNA_Ecto-sp8_S_contig106467.1008.1 vs. uniprot
Match: A0A844CMY0_9RHOB (2-isopropylmalate synthase n=1 Tax=Roseovarius bejariae TaxID=2576383 RepID=A0A844CMY0_9RHOB)

HSP 1 Score: 52.8 bits (125), Expect = 5.450e-5
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:    1 LPNGYEYVGEWVDGDIKGKGQARF 72
            LPNGYEYVGEWVDG+IKGKG ARF
Sbjct:   54 LPNGYEYVGEWVDGEIKGKGVARF 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106467.1008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0P1ILP5_9RHOB1.880e-6100.00tRNA(1-methyladenosine) methyltransferase n=3 Tax=... [more]
A0A844CMY0_9RHOB5.450e-591.672-isopropylmalate synthase n=1 Tax=Roseovarius bej... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106467contigEcto-sp8_S_contig106467:2..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size501
Hectar predicted targeting categoryother localisation
Exons1
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.6178288-CDS-Ecto-sp8_S_contig106467:1..5021681143161.6178288-CDS-Ecto-sp8_S_contig106467:1..502Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106467 2..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106467.1008.1prot_Ecto-sp8_S_contig106467.1008.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106467 2..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106467.1008.1

>prot_Ecto-sp8_S_contig106467.1008.1 ID=prot_Ecto-sp8_S_contig106467.1008.1|Name=mRNA_Ecto-sp8_S_contig106467.1008.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=167bp
LPNGYEYVGEWVDGDIKGKGQARFPNGSVYEGQFAKGKPEGIGKITFTDG
GTYEGEWKDGKINGTGVAIYANGVRFEGGFLNAMHHGKGVMTSPGGYVYD
GDWVNGVKEGMGRITYPDGAIYAGQIVAGEREGDGKLTMPDGLIYEGLWR
AGQIEGTGVLTQPNGDV
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mRNA from alignment at Ecto-sp8_S_contig106467:2..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106467.1008.1 ID=mRNA_Ecto-sp8_S_contig106467.1008.1|Name=mRNA_Ecto-sp8_S_contig106467.1008.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106467:2..502- (Ectocarpus species8 EcLAC_412)
CTGCCGAACGGCTATGAATACGTCGGCGAATGGGTCGACGGCGATATCAA
AGGCAAGGGTCAGGCGCGGTTTCCGAACGGCTCTGTCTATGAGGGCCAGT
TTGCCAAAGGCAAACCCGAAGGCATCGGCAAGATCACCTTTACCGATGGC
GGCACCTATGAAGGCGAATGGAAAGACGGCAAGATCAACGGCACCGGCGT
TGCGATCTATGCCAACGGTGTGCGTTTCGAGGGTGGTTTCCTGAACGCGA
TGCATCACGGCAAAGGTGTCATGACCAGCCCCGGCGGCTATGTCTATGAT
GGTGACTGGGTCAATGGTGTCAAAGAAGGCATGGGGCGGATCACCTATCC
GGATGGCGCGATCTATGCGGGCCAGATTGTTGCCGGCGAACGCGAAGGTG
ACGGCAAGCTGACCATGCCGGACGGATTGATCTATGAAGGTCTGTGGCGT
GCGGGACAAATCGAAGGGACGGGTGTTTTGACCCAACCCAACGGTGATGT
C
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106467:2..502-

>mRNA_Ecto-sp8_S_contig106467.1008.1 ID=mRNA_Ecto-sp8_S_contig106467.1008.1|Name=mRNA_Ecto-sp8_S_contig106467.1008.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106467:2..502- (Ectocarpus species8 EcLAC_412)
CTGCCGAACGGCTATGAATACGTCGGCGAATGGGTCGACGGCGATATCAA
AGGCAAGGGTCAGGCGCGGTTTCCGAACGGCTCTGTCTATGAGGGCCAGT
TTGCCAAAGGCAAACCCGAAGGCATCGGCAAGATCACCTTTACCGATGGC
GGCACCTATGAAGGCGAATGGAAAGACGGCAAGATCAACGGCACCGGCGT
TGCGATCTATGCCAACGGTGTGCGTTTCGAGGGTGGTTTCCTGAACGCGA
TGCATCACGGCAAAGGTGTCATGACCAGCCCCGGCGGCTATGTCTATGAT
GGTGACTGGGTCAATGGTGTCAAAGAAGGCATGGGGCGGATCACCTATCC
GGATGGCGCGATCTATGCGGGCCAGATTGTTGCCGGCGAACGCGAAGGTG
ACGGCAAGCTGACCATGCCGGACGGATTGATCTATGAAGGTCTGTGGCGT
GCGGGACAAATCGAAGGGACGGGTGTTTTGACCCAACCCAACGGTGATGT
C
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