mRNA_Ecto-sp8_S_contig106457.1007.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106457.1007.1
Unique NamemRNA_Ecto-sp8_S_contig106457.1007.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106457.1007.1 vs. uniprot
Match: A0A6H5J6B2_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B2_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.430e-65
Identity = 129/159 (81.13%), Postives = 135/159 (84.91%), Query Frame = -2 
Query:    5 RVAPEILTSHGRGTAKRLKRLSKSEVWGPDVRNAAARLLRAWRGVVDVGGGATANAKAATKRSQDEERGSGGSDSE------GGAKAKVGAEQMVERVRPAASTKPRLVGEKEQVEKNDEQQ-GISNSGHKSPATIPDAGSSSSDVSPKDTCPPEKQQK 460
            RVAPE+LTSHGRGTAKRLKRLSKSEVWGPDVRNAAARLLRAWRGVVDVGGGATA +KAATKRSQDEERG  GS         GGAKAKVGAEQ+V+RVRPAASTKPRLVGEKEQ         GIS+SGHKSPA +PDAGSSSSD SPK TCPPEKQQK
Sbjct:  101 RVAPELLTSHGRGTAKRLKRLSKSEVWGPDVRNAAARLLRAWRGVVDVGGGATAYSKAATKRSQDEERGGAGSGXXXXXXXXGGAKAKVGAEQIVDRVRPAASTKPRLVGEKEQXXXXXXXXXGISSSGHKSPAPMPDAGSSSSDFSPKVTCPPEKQQK 259
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BLAST of mRNA_Ecto-sp8_S_contig106457.1007.1 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.730e-27
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = -2 
Query:    2 MVERVRPAASTKPRLVGEKEQVEKNDEQQGISNSGHKSPATIPDAGSSSSDVSPKDTCPPEKQQKK 199
            MVERVRPAASTKPRLVGEKEQ EKNDEQQGIS+SGHKSPATIPDAGSSSSDVSPKDTCPPEKQQKK
Sbjct:    1 MVERVRPAASTKPRLVGEKEQEEKNDEQQGISDSGHKSPATIPDAGSSSSDVSPKDTCPPEKQQKK 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106457.1007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6B2_9PHAE1.430e-6581.13AAA_11 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LLI3_ECTSI1.730e-2796.97Presumed helicase required for RNA polymerase II t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106457contigEcto-sp8_S_contig106457:40..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size461
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.5733094-UTR-Ecto-sp8_S_contig106457:39..1461681143161.5733094-UTR-Ecto-sp8_S_contig106457:39..146Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig106457 40..146 +
1681143161.592138-UTR-Ecto-sp8_S_contig106457:473..5001681143161.592138-UTR-Ecto-sp8_S_contig106457:473..500Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig106457 474..500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.5831287-CDS-Ecto-sp8_S_contig106457:146..4731681143161.5831287-CDS-Ecto-sp8_S_contig106457:146..473Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106457 147..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106457.1007.1prot_Ecto-sp8_S_contig106457.1007.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106457 147..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106457.1007.1

>prot_Ecto-sp8_S_contig106457.1007.1 ID=prot_Ecto-sp8_S_contig106457.1007.1|Name=mRNA_Ecto-sp8_S_contig106457.1007.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=109bp
MPCCSSFFSTCSFSPTSLGFVEAAGRTRSTICSAPTLALAPPSLSLPPLP
RSSSWDLFVAALALAVAPPPTSTTPLHARRRRAAALRTSGPHTSDLERRL
RRLAVPRP*
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mRNA from alignment at Ecto-sp8_S_contig106457:40..500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106457.1007.1 ID=mRNA_Ecto-sp8_S_contig106457.1007.1|Name=mRNA_Ecto-sp8_S_contig106457.1007.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=461bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106457:40..500+ (Ectocarpus species8 EcLAC_412)
GCTTCTTCTGTTGCTTCTCCGGAGGGCAGGTGTCCTTCGGAGAAACGTCG
GAACTGGATGAACCAGCGTCAGGTATCGTTGCTGGGGATTTGTGTCCCGA
GTTCGATATGCCCTGCTGCTCGTCGTTCTTCTCCACCTGCTCTTTCTCTC
CCACTAGCCTCGGCTTTGTCGAGGCCGCCGGCCGGACGCGTTCAACCATT
TGTTCAGCCCCAACTTTAGCCTTGGCTCCACCTTCACTGTCACTCCCACC
ACTACCGCGCTCCTCGTCTTGGGATCTCTTTGTCGCCGCCTTGGCATTAG
CGGTCGCGCCGCCGCCCACGTCGACCACCCCTCTCCACGCCCGGAGAAGA
CGAGCGGCAGCGTTGCGGACGTCAGGGCCCCACACCTCCGACTTGGAGAG
GCGCTTGAGGCGCTTGGCGGTGCCACGGCCGTGAGAGGTAAGGATTTCCG
GGGCAACCCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106457:40..500+

>mRNA_Ecto-sp8_S_contig106457.1007.1 ID=mRNA_Ecto-sp8_S_contig106457.1007.1|Name=mRNA_Ecto-sp8_S_contig106457.1007.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106457:40..500+ (Ectocarpus species8 EcLAC_412)
ATGCCCTGCTGCTCGTCGTTCTTCTCCACCTGCTCTTTCTCTCCCACTAG
CCTCGGCTTTGTCGAGGCCGCCGGCCGGACGCGTTCAACCATTTGTTCAG
CCCCAACTTTAGCCTTGGCTCCACCTTCACTGTCACTCCCACCACTACCG
CGCTCCTCGTCTTGGGATCTCTTTGTCGCCGCCTTGGCATTAGCGGTCGC
GCCGCCGCCCACGTCGACCACCCCTCTCCACGCCCGGAGAAGACGAGCGG
CAGCGTTGCGGACGTCAGGGCCCCACACCTCCGACTTGGAGAGGCGCTTG
AGGCGCTTGGCGGTGCCACGGCCGTGA
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