mRNA_Ecto-sp8_S_contig106424.1004.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106424.1004.1
Unique NamemRNA_Ecto-sp8_S_contig106424.1004.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Match: A0A351C9A4_9BACT (MR_MLE domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A351C9A4_9BACT)

HSP 1 Score: 196 bits (497), Expect = 2.100e-58
Identity = 93/164 (56.71%), Postives = 118/164 (71.95%), Query Frame = 1
Query:    1 MKIAAVDFFPMHLEAPSDA--GTDGSKQSQLDFTPEKLAARRYKPPESVFVRLISDDGIEGYGDGATLPHYLGHGVGSMLDWLGRFREVLIGEEPRNITAIHQRMELVASIGVPGCRPAQAAIDMAIHDLVAKSFECPVYELLGGSYRNTLELQTQMHGHTIEQ 486
            MKI  ++++P+ L    D+  GTD     Q+  + E +AA+RYK PE+  + + +DDG+ G GDGATLPHYLGHG+GSM+DW+ RFR VLIG +P NI  IHQ ME VA     GCRPAQAAIDMAI+DL  K   CPV++LLGG+YR +L+LQTQMHG T EQ
Sbjct:    1 MKITNIEYYPLQLTVAGDSEIGTDEDPSRQVGASAESMAAQRYKAPETGVILIRTDDGLVGIGDGATLPHYLGHGIGSMVDWMARFRTVLIGADPLNIAGIHQLMEAVADRNPAGCRPAQAAIDMAIYDLAGKVHNCPVFDLLGGAYRTSLDLQTQMHGQTPEQ 164          
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Match: A0A524HGK4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Brocadiae bacterium TaxID=2517210 RepID=A0A524HGK4_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 5.360e-19
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 MKIAAVDFFPMHLE--AP-SDAGTDGSKQSQLDFTPEKLAARRYKPPESVFVRLISDDGIEGYGDGATLPHY 207
            MKI  +DFFP+ L   AP S  GTD +   Q D T E LAA+RY PPE+VFVR+ +D GI+G+GDGATLPHY
Sbjct:    1 MKITTIDFFPLRLAIGAPGSPLGTDSNAMEQRDATAEVLAAQRYTPPETVFVRIRTDSGIQGFGDGATLPHY 72          
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Match: A0A3G3K383_9BACL (MR_MLE domain-containing protein n=2 Tax=Cohnella candidum TaxID=2674991 RepID=A0A3G3K383_9BACL)

HSP 1 Score: 79.0 bits (193), Expect = 2.850e-14
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  139 VFVRLISDDGIEGYGDGATLPHYLGHGVGSMLDWLGR-FREVLIGEEPRNITAIHQRMELVASIGVPGCRPAQAAIDMAIHDLVAKSFECPVYELLGGSYR 438
            V V++I++DG+ G G+ AT+P Y       ++  +G+ F+ +L+G++PRNI  IH  M    S  V G R A++AID A++DL AKS+  PVY+LLGG+ R
Sbjct:   39 VIVKVITEDGMTGLGEAATIPIYDEGSQAGVVFSIGKYFKPLLVGQDPRNIGLIHDIM----SRTVKGERYAKSAIDYALYDLTAKSYGVPVYQLLGGNNR 135          
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Match: UPI00178B6788 (dipeptide epimerase n=1 Tax=Sporosarcina limicola TaxID=34101 RepID=UPI00178B6788)

HSP 1 Score: 77.4 bits (189), Expect = 1.010e-13
Identity = 52/146 (35.62%), Postives = 72/146 (49.32%), Query Frame = 1
Query:    1 MKIAAVDFFPMHLEAPSDAGTDGSKQSQLDFTPEKLAARRYKPPESVFVRLISDDGIEGYGDGATLPHYLGHGVGSMLDWL-GRFREVLIGEEPRNITAIHQRMELVASIGVPGCRPAQAAIDMAIHDLVAKSFECPVYELLGGSY 435
            MKI+ ++ + +HL                 + P  ++   Y    S+ V++I+D G  GYG+G    H  G    S    L      VLIGE PRN+  IH  M+     GVP    A+AAID+A +D+V KS   PVY+LLGG Y
Sbjct:    1 MKISEIEIYAIHLPL---------------YEPFIISYATYDYMPSIIVKIITDSGHVGYGEGVADEHVTGESWESTFAILKNTLAPVLIGENPRNMERIHNLMDATI-YGVP---TAKAAIDIACYDVVGKSLGVPVYDLLGGRY 127          
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Match: UPI001FAC4A58 (dipeptide epimerase n=1 Tax=Bacillus sp. FJAT-47783 TaxID=2922712 RepID=UPI001FAC4A58)

HSP 1 Score: 77.0 bits (188), Expect = 1.370e-13
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   91 FTPEKLAARRYKPPESVFVRLISDDGIEGYGDGATLPHYLGHGVGSMLDWLGRF-REVLIGEEPRNITAIHQRMELVASIGVPGCRPAQAAIDMAIHDLVAKSFECPVYELLGGSYRNTLEL 453
             TP  ++   Y    S+ V++ +DDG+ GYG+G    H  G    S  + +       LIGE P NI  IH++M       + G   A+AAID+A +DL+ K+   PVY LLGG YR++L++
Sbjct:   16 ITPFIVSYHTYNDMPSIIVKIETDDGLIGYGEGTPDEHVTGEEWKSTYEMIKNILAPELIGENPFNIEKIHEKMNKK----IYGAPTAKAAIDIACYDLMGKAANQPVYNLLGGKYRDSLKI 133          
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Match: A0A359KN06_9CHLR (Dipeptide epimerase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A359KN06_9CHLR)

HSP 1 Score: 73.9 bits (180), Expect = 3.240e-13
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  133 ESVFVRLISDDGIEGYGDGATLPHYLGHGVGSMLDWLGRFREVLIGEEPRNITAIHQRMELVASIGVPGCRPAQAAIDMAIHDLVAKSFECPVYELLGGSYRNTLEL 453
            ESV VRL +DDG  G+G+G   PH  G   G +L+ L      L+G +P + TA+   ++   S    G   A+AAID+A+HDLV ++   PV+ LLGG  R  L +
Sbjct:   30 ESVLVRLETDDGTTGWGEGTPDPHVTGETFGGVLETLRLLAPTLLGRDPLDRTALISDLDRRIS----GNPTAKAAIDIALHDLVGRATGLPVWALLGGRSRTHLTI 132          
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Match: T1CH05_9ZZZZ (Mandelate racemase/muconate lactonizing enzyme family protein (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T1CH05_9ZZZZ)

HSP 1 Score: 73.6 bits (179), Expect = 3.790e-13
Identity = 43/127 (33.86%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   73 KQSQLDFT-PEKLAARRYKPPESVFVRLISDDGIEGYGDGATLPHYLGHGVGSMLDWLGRFREVLIGEEPRNITAIHQRMELVASIGVPGCRPAQAAIDMAIHDLVAKSFECPVYELLGGSYRNTLE 450
            K+  +D   P K+A       E  FV+++SD G+EGYG+    P   G  +GS+   L  FR+ L G E  +  A+++RM+ +A       + ++AA+DMA++D++ K  + P+Y++LGG YR++++
Sbjct:    9 KKINIDMKKPFKIALGSTDFYEGYFVKVVSDSGLEGYGEAIPTPFITGDTMGSVEAELSIFRQALKGSE-LSTEAVNERMKALAR----SSKASRAAVDMALYDILGKKADLPLYQILGG-YRSSMK 129          
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Match: A0A0J1GAZ1_9FIRM (Dipeptide epimerase n=4 Tax=Robinsoniella TaxID=588605 RepID=A0A0J1GAZ1_9FIRM)

HSP 1 Score: 75.5 bits (184), Expect = 4.620e-13
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  133 ESVFVRLISDDGIEGYGDGATLPHYLGHGVGSMLDWLGRFREVLIGEEPRNITAIHQRMELVASIGVPGCRPAQAAIDMAIHDLVAKSFECPVYELLGG 429
            E+V V++I+DDGI GYG+ A L    G  +  ++  L  FR+ LIGE+P NI  IH  M    +  + G   A+ AID+A++D+  K    PVY++LGG
Sbjct:   30 ENVLVKIITDDGIAGYGEAAPLAFVTGETIEGVIAALQMFRQGLIGEDPLNIERIHALM----NGAIAGNTSAKCAIDLALYDIRGKVMGQPVYKVLGG 124          
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Match: UPI001557F55B (dipeptide epimerase n=2 Tax=Sporosarcina TaxID=1569 RepID=UPI001557F55B)

HSP 1 Score: 74.7 bits (182), Expect = 9.280e-13
Identity = 49/152 (32.24%), Postives = 74/152 (48.68%), Query Frame = 1
Query:    1 MKIAAVDFFPMHLEAPSDAGTDGSKQSQLDFTPEKLAARRYKPPESVFVRLISDDGIEGYGDGATLPHYLGHGVGSMLDWL-GRFREVLIGEEPRNITAIHQRMELVASIGVPGCRPAQAAIDMAIHDLVAKSFECPVYELLGGSYRNTLEL 453
            MKI+ ++ + +HL                 + P  ++   Y    S+ V+L +D G+ GYG+G    H  G    S    L       L+GE P+NI  IH+ M+ V   GVP    A+AAID+A +D+V K+   PVY+L+GG +     L
Sbjct:    1 MKISQIEIYAIHLPL---------------YEPFVISYATYDYMPSIIVKLTTDSGLVGYGEGVADEHVTGESWESTFAILKNTIAPKLLGENPKNIERIHELMDSVI-YGVP---TAKAAIDIACYDVVGKALGVPVYDLIGGRFHKEFPL 133          
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Match: A0A1V5C509_9DELT (L-Ala-D/L-Glu epimerase n=1 Tax=Syntrophorhabdus sp. PtaU1.Bin050 TaxID=1811703 RepID=A0A1V5C509_9DELT)

HSP 1 Score: 74.7 bits (182), Expect = 9.990e-13
Identity = 41/114 (35.96%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  133 ESVFVRLISDDGIEGYGDGATL-PHYLGHGVGSMLDWLGR--FREVLIGEEPRNITAIHQRMELVASIGVPGCRPAQAAIDMAIHDLVAKSFECPVYELLGGSYRNTLELQTQM 465
            + V ++L +D+GI G G+G+TL P Y G    +++  +G   F +VL G++P NI  IH+ M+ V    V     A++AID A+HD++ K+   PVY L+GG + + + L+  +
Sbjct:   31 DDVVIKLYTDEGITGLGEGSTLGPFYCGESQETVMGIIGHHLFPKVLDGKDPFNIDLIHRHMDKV----VYENSVAKSAIDFALHDIMGKALNVPVYRLIGGKFTDRIPLRASV 140          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106424.1004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351C9A4_9BACT2.100e-5856.71MR_MLE domain-containing protein n=1 Tax=Bacteroid... [more]
A0A524HGK4_9BACT5.360e-1959.72Uncharacterized protein n=1 Tax=Candidatus Brocadi... [more]
A0A3G3K383_9BACL2.850e-1443.56MR_MLE domain-containing protein n=2 Tax=Cohnella ... [more]
UPI00178B67881.010e-1335.62dipeptide epimerase n=1 Tax=Sporosarcina limicola ... [more]
UPI001FAC4A581.370e-1336.89dipeptide epimerase n=1 Tax=Bacillus sp. FJAT-4778... [more]
A0A359KN06_9CHLR3.240e-1340.19Dipeptide epimerase (Fragment) n=1 Tax=Chloroflexi... [more]
T1CH05_9ZZZZ3.790e-1333.86Mandelate racemase/muconate lactonizing enzyme fam... [more]
A0A0J1GAZ1_9FIRM4.620e-1341.41Dipeptide epimerase n=4 Tax=Robinsoniella TaxID=58... [more]
UPI001557F55B9.280e-1332.24dipeptide epimerase n=2 Tax=Sporosarcina TaxID=156... [more]
A0A1V5C509_9DELT9.990e-1335.96L-Ala-D/L-Glu epimerase n=1 Tax=Syntrophorhabdus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106424contigEcto-sp8_S_contig106424:3..488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score75.9
Seed ortholog evalue2e-11
Seed eggNOG ortholog1089552.KI911559_gene1325
Model size486
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EggNOG OGs1MU8R@1224,2JZFW@204441,2TSS4@28211,COG4948@1,COG4948@2
Cds size486
COG Functional cat.M
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.4259946-CDS-Ecto-sp8_S_contig106424:2..4881681143161.4259946-CDS-Ecto-sp8_S_contig106424:2..488Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106424 3..488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106424.1004.1prot_Ecto-sp8_S_contig106424.1004.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106424 3..488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106424.1004.1

>prot_Ecto-sp8_S_contig106424.1004.1 ID=prot_Ecto-sp8_S_contig106424.1004.1|Name=mRNA_Ecto-sp8_S_contig106424.1004.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=162bp
MKIAAVDFFPMHLEAPSDAGTDGSKQSQLDFTPEKLAARRYKPPESVFVR
LISDDGIEGYGDGATLPHYLGHGVGSMLDWLGRFREVLIGEEPRNITAIH
QRMELVASIGVPGCRPAQAAIDMAIHDLVAKSFECPVYELLGGSYRNTLE
LQTQMHGHTIEQ
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mRNA from alignment at Ecto-sp8_S_contig106424:3..488-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106424.1004.1 ID=mRNA_Ecto-sp8_S_contig106424.1004.1|Name=mRNA_Ecto-sp8_S_contig106424.1004.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=486bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106424:3..488- (Ectocarpus species8 EcLAC_412)
ATGAAAATCGCCGCCGTTGATTTCTTCCCGATGCACCTGGAGGCTCCATC CGATGCAGGCACAGATGGTTCAAAGCAATCTCAGCTTGACTTCACGCCCG AAAAGCTTGCTGCGCGGCGATACAAGCCGCCCGAAAGCGTGTTTGTCCGT TTGATTTCCGATGATGGGATTGAAGGCTATGGTGATGGCGCGACGCTGCC TCACTATCTGGGACATGGCGTGGGTAGCATGCTTGACTGGCTTGGCCGTT TCCGCGAGGTCCTGATTGGCGAGGAGCCCCGCAATATCACCGCGATACAT CAACGGATGGAACTGGTCGCCAGCATTGGCGTGCCCGGATGTCGACCAGC GCAGGCGGCAATCGACATGGCAATTCATGATCTGGTCGCGAAATCTTTTG AATGTCCTGTTTATGAGCTGCTTGGTGGCAGCTATCGAAACACGCTCGAG TTGCAAACTCAGATGCATGGCCACACGATCGAACAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106424:3..488-

>mRNA_Ecto-sp8_S_contig106424.1004.1 ID=mRNA_Ecto-sp8_S_contig106424.1004.1|Name=mRNA_Ecto-sp8_S_contig106424.1004.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106424:3..488- (Ectocarpus species8 EcLAC_412)
ATGAAAATCGCCGCCGTTGATTTCTTCCCGATGCACCTGGAGGCTCCATC
CGATGCAGGCACAGATGGTTCAAAGCAATCTCAGCTTGACTTCACGCCCG
AAAAGCTTGCTGCGCGGCGATACAAGCCGCCCGAAAGCGTGTTTGTCCGT
TTGATTTCCGATGATGGGATTGAAGGCTATGGTGATGGCGCGACGCTGCC
TCACTATCTGGGACATGGCGTGGGTAGCATGCTTGACTGGCTTGGCCGTT
TCCGCGAGGTCCTGATTGGCGAGGAGCCCCGCAATATCACCGCGATACAT
CAACGGATGGAACTGGTCGCCAGCATTGGCGTGCCCGGATGTCGACCAGC
GCAGGCGGCAATCGACATGGCAATTCATGATCTGGTCGCGAAATCTTTTG
AATGTCCTGTTTATGAGCTGCTTGGTGGCAGCTATCGAAACACGCTCGAG
TTGCAAACTCAGATGCATGGCCACACGATCGAACAA
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