mRNA_Ecto-sp8_S_contig10636.998.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10636.998.1
Unique NamemRNA_Ecto-sp8_S_contig10636.998.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10636.998.1 vs. uniprot
Match: D7G2W8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W8_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.030e-56
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1 
Query:  124 MMGSESRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLHQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGITKFINQ 408
            MMGS+SRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDL QRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGITKFINQ
Sbjct:    1 MMGSQSRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGITKFINQ 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10636.998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2W8_ECTSI1.030e-5697.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10636contigEcto-sp8_S_contig10636:3162..4836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size444
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_004630.1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.00426-CDS-Ecto-sp8_S_contig10636:3161..33091681143161.00426-CDS-Ecto-sp8_S_contig10636:3161..3309Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10636 3162..3309 -
1681143161.0205784-CDS-Ecto-sp8_S_contig10636:3636..37771681143161.0205784-CDS-Ecto-sp8_S_contig10636:3636..3777Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10636 3637..3777 -
1681143161.029751-CDS-Ecto-sp8_S_contig10636:4681..48361681143161.029751-CDS-Ecto-sp8_S_contig10636:4681..4836Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10636 4682..4836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10636.998.1prot_Ecto-sp8_S_contig10636.998.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10636 3162..4836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10636.998.1

>prot_Ecto-sp8_S_contig10636.998.1 ID=prot_Ecto-sp8_S_contig10636.998.1|Name=mRNA_Ecto-sp8_S_contig10636.998.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=148bp
MWFMGRQPAADSRKSATATSLRSSRLLHDHYGYSSRSVGRGMMGSESRWG
WSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLHQRDKGLRRL
VAYLVFFLLFFGILILESDVTFQHSVETGITKFINQVRPASSVRKKSS
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mRNA from alignment at Ecto-sp8_S_contig10636:3162..4836-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10636.998.1 ID=mRNA_Ecto-sp8_S_contig10636.998.1|Name=mRNA_Ecto-sp8_S_contig10636.998.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1675bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10636:3162..4836- (Ectocarpus species8 EcLAC_412)
ATGTGGTTCATGGGCAGACAGCCAGCGGCCGACTCGCGCAAGAGCGCTAC
TGCTACGTCGTTGCGAAGCAGTAGGCTACTACACGACCATTACGGCTACA
GCAGCAGGAGCGTTGGACGGGGCATGATGGGAAGCGAATCCCGGTGGGGA
TGGAGGTAGGTGCGTCGGCGGGCGGGGCTACCCTCTTGTATGTGTGATCA
TGACCATTGGAGGTTAGCGTTGGTGTGGGGCAACCTTGCGAGTTTGTCGA
AAGCATGGTTGTACGGCAAGACGAACAGCCCATGAGCCGTCCTATGCAGA
CACTATGTGCAGCAACACACGTTACAAAGTGGTCACACTTTTTTTTGTTG
CAGCCCGGTGAGAACCCTAGAACCCTTGACTACATCAGAGGACCGAGTGG
TAATCACTTCTGCGCTACTGCTAAGAGCCTGGTATGATCGTAGAACACTC
CGCTTGGTGGAATCGCGCGATGCACTGCCCAAAGCTACTGCTGCATGGTA
TGTGACTTACTTGAGAGTAGAACCTGACCACATGCGCTACGGTGTAGCCT
AGTTCGAGGGTCGTGAACAACAAGCGCACACAGACACACGGATAGTGAAG
CACAACGACCTCTCTGTGGGTACGTGGGGTGGCGCTGTAGCTCATGAACG
AAGAATTGCTGTGTTCTACCGCGGCGGCTTGGAACGTCCCAATGCAGCAG
TTCAGCAGTCCCACGACACCTCTGAGCGCACTGGCTTTCACCTACTCGCT
CTCGGTTGTATCATCTGCGAACCCTCCCCCCGTGGATGAAAGTTAGCACA
ACTACAACTTGAATACCTACCCTTTTACGGTCTCGCCTTCTGCACGTCCA
CATTCTACTTTGGGCCAAATCCAGTTGTGACCACGCAAAAGCTTGTTGGT
TGCCATCACAATTACTCACTCGGAGTACGCACATAGAACAAGAGGAGGCC
GGTCTATGGGCAAACAACTAAGATGCTCGTGACCCCCCCCTGTCCATTTC
CCGTGTGCGTGTGCCTGCTCCTCCTAATGGTTGACCGAAAAACATGGTGG
CGCTGCCAGCCGGTCAGAGACCGAACGGCTGGTTCGGCTGCAAGCCGTCG
TGAGGGGGTGGCTGTTGCGGCGAAAGGTTAATTGGATCCCGGCGAGAGAC
CTGGAGGCTGTGCTGAAGGACCTGCACCAGAGGGACAAGGGCTTGAGAAG
GTACCGCTGTGGAATTCCCTCGTGTCTTGATGCTTGTGTGTGTGTCCACG
CCGTGGCCGGTGGCGTATCTTGTGATAGTCTACGGGACTGCTGTAGTTTG
TTTGAGCCCTCCAAGGGCAGGGTTTGGAGGGGACACGGGGAACGTAAGTC
GAGGTTTGCTGCTCTCTCTGTCTCTCTCTCTGTCTCTATTTCTCTGTCTC
AGGTTCTTCCTCAGTGCGTTCTCGTGCGCTCTAAATGCTGAGGTCATGTT
CTACCTTGAACCTTGTACCTCTTGTGTACCTCTTGCACCGCGTGTCACGG
TCGTCATCGTCATCGTCATCATCACAGGCTGGTGGCCTACCTTGTCTTCT
TTCTGCTCTTCTTCGGGATCCTCATTCTCGAGTCTGACGTCACCTTCCAG
CACTCCGTCGAGACCGGCATTACAAAATTCATCAACCAGGTTAGGCCCGC
AAGCAGCGTGAGAAAGAAAAGCTCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10636:3162..4836-

>mRNA_Ecto-sp8_S_contig10636.998.1 ID=mRNA_Ecto-sp8_S_contig10636.998.1|Name=mRNA_Ecto-sp8_S_contig10636.998.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10636:3162..4836- (Ectocarpus species8 EcLAC_412)
ATGTGGTTCATGGGCAGACAGCCAGCGGCCGACTCGCGCAAGAGCGCTAC
TGCTACGTCGTTGCGAAGCAGTAGGCTACTACACGACCATTACGGCTACA
GCAGCAGGAGCGTTGGACGGGGCATGATGGGAAGCGAATCCCGGTGGGGA
TGGAGCCGGTCAGAGACCGAACGGCTGGTTCGGCTGCAAGCCGTCGTGAG
GGGGTGGCTGTTGCGGCGAAAGGTTAATTGGATCCCGGCGAGAGACCTGG
AGGCTGTGCTGAAGGACCTGCACCAGAGGGACAAGGGCTTGAGAAGGCTG
GTGGCCTACCTTGTCTTCTTTCTGCTCTTCTTCGGGATCCTCATTCTCGA
GTCTGACGTCACCTTCCAGCACTCCGTCGAGACCGGCATTACAAAATTCA
TCAACCAGGTTAGGCCCGCAAGCAGCGTGAGAAAGAAAAGCTCG
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