mRNA_Ecto-sp8_S_contig10632.993.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10632.993.1
Unique NamemRNA_Ecto-sp8_S_contig10632.993.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Match: D7FYJ9_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYJ9_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 1.270e-87
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 1
Query:    1 QMPPLQLLSRMAPLALVQMAAGALALGEVSSLVANWREIREGWALYGVAITGVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNKSREVKALIEPPEIGIGKSLPLLPK 447
            +MPPLQLLSRMAPLALVQMA GALALGEVSSLVANWREIREGWALYGVAITGVGSFSLN CSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNKSREVKALIEPPEIGIGKSLPLLPK
Sbjct:  210 KMPPLQLLSRMAPLALVQMAVGALALGEVSSLVANWREIREGWALYGVAITGVGSFSLNLCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNKSREVKALIEPPEIGIGKSLPLLPK 358          
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Match: A0A7S1XZK4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZK4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.450e-26
Identity = 58/124 (46.77%), Postives = 88/124 (70.97%), Query Frame = 1
Query:   19 LLSRMAPLALVQMAAGALALGEVSSLVANWREIREGWALYGVAITGVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNKSREVK 390
            LLSRMAPL+ V M   A+A GEV+++   W E+ +G+AL+ V  +GV S SLN  S  ANKVTSPLTL+I +N+KQV+++  ++++F+   S+LN  G  VVI+ S RYS+++V E+ ++ + K
Sbjct:  201 LLSRMAPLSFVWMTLAAVATGEVAAIRERWAELSDGYALHVVVFSGVLSVSLNISSFMANKVTSPLTLTIASNVKQVVLMCFATLLFRTPVSSLNGAGMAVVIIGSARYSLVTVREKKEAAKEK 324          
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Match: A0A7S0F581_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F581_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.180e-25
Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = 1
Query:   10 PLQLLSRMAPLALVQMAAGALALGEVSSLVANWREIREGWALYGVAITGVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNKSREVKALIEPPEIGIG 423
            P+ LL  MAPLA+VQ    + A GEVSS++       + + L  V ++G+ SFSLN CSL ANK+TSPLTL I AN+KQVL++A S+++F    STLN  G VVV++ S RYS +SV E+    E K+   P ++  G
Sbjct:  199 PVDLLGHMAPLAMVQCIVLSFATGEVSSILGRPELYTDPYPLMVVLMSGLFSFSLNICSLMANKLTSPLTLCIAANVKQVLMIALSTIIFSTPISTLNGLGIVVVLMGSGRYSYVSVLEK---MEKKSTTSPDDVEAG 333          
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Match: A0A7S2W4X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W4X8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.430e-24
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    1 QMPPLQLLSRMAPLALVQMAAGALALGEVSSLVANWREIREGWALYGVAITGVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNKSREVKALIEP 405
            ++PPL+LL +MAP+AL+Q    +   GE+  +  N    +  W +  V ++G+ SF+LN CSLQANKVTSPLTL I AN KQVL++A  + +F    +TLN FG ++V++AS  YS++S+ ER      K  I P
Sbjct:   24 ELPPLELLRQMAPMALLQCLIMSFLNGELKGVNLNGITAKA-WRV--VIVSGMVSFTLNICSLQANKVTSPLTLCIAANAKQVLMIAIGTTLFNTHITTLNGFGIIIVLMASANYSLVSLKERTTKSSNKDNILP 155          
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Match: A0A7S3HSE3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSE3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.920e-24
Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   13 LQLLSRMAPLALVQMAAGALALGEVSSLVANWREIREGWALYGVAITGVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSER 369
            + LLS+M P+AL+ +   ++  GEVS+++  W E+    A   V +TGV SFSLN  S  ANKVTSPLTL I AN+KQVL+VA S++ F D+   LN  G ++VI  S RY  +S++E+
Sbjct:   47 MDLLSKMCPIALILIGTVSIMSGEVSAIMGRWEELAISSAPQVVLLTGVLSFSLNVSSFIANKVTSPLTLCISANVKQVLVVAVSTLYFGDSVPLLNGLGILIVIYGSYRYGAISINEK 165          
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Match: A0A448YVT5_9STRA (TPT domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVT5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.160e-23
Identity = 58/126 (46.03%), Postives = 82/126 (65.08%), Query Frame = 1
Query:   10 PLQLLSRMAPLALVQMAAGALALGEVSSLVANWREIREGWALYGVAITGVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNKSREV 387
            P+ LL  MAPLA+VQ    +   GEVSS+ A        + +  V ++G+ SFSLN CSL ANK+TSPLTL I AN+KQVL++  S+V+F    + +N FG VVV++ S RYS +SV E+   +++
Sbjct:  154 PVDLLGHMAPLAMVQCIVLSFLTGEVSSISARPEIYNNYYPIGVVLMSGIFSFSLNICSLMANKMTSPLTLCIAANVKQVLMICISTVIFSTKITPMNGFGIVVVLMGSARYSYISVLEKQAGQKM 279          
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Match: A0A7S2VF30_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VF30_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.110e-23
Identity = 72/163 (44.17%), Postives = 98/163 (60.12%), Query Frame = 1
Query:   10 PLQLLSRMAPLALVQMAAGALALGEVSSLVANW-REIREGWALYGVAI---TGVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERN---KSREVKA---LIEPPE-------IGIGKSLPLLPK 447
            P+ LL  MAPLALVQ    A   GE++S+ + W +E+     +Y   +   +GV SF+LN  SLQANK+TSPLTL I AN+KQVL++A S+V+F    S LN  G +VV++ S RYS +SV E++   +S +VK      EP E        G GK   L+PK
Sbjct:  152 PVDLLGHMAPLALVQCIVFAFFTGEITSIASRWEKELNPFVNIYPFLVVVGSGVASFTLNISSLQANKLTSPLTLCIAANVKQVLMIAMSTVLFNIDISPLNGAGILVVLMGSARYSYVSVMEKSAPKQSSDVKMSPKTTEPDEEKGALLPSGSGKEAELVPK 314          
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Match: A0A7S0AFC0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AFC0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.030e-23
Identity = 61/129 (47.29%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   10 PLQLLSRMAPLALVQMAAGALALGEVSSLVANW-REIREG---WALYGVAITGVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNKSRE 384
            P+ LL  MAPLA++Q    +   GEVSS+   W  E+      + L  V ++GV SFSLN CSL ANK+TSPLTL I AN+KQVL++A S+++F    + LN  G VVV+L STRYS + V E+ + ++
Sbjct:  115 PVDLLGHMAPLAMIQCLVLSFLSGEVSSIAQRWDTELSPKVNYFPLTVVFVSGVCSFSLNICSLMANKLTSPLTLCIAANVKQVLMIAISTIIFHIEITPLNGSGIVVVLLGSTRYSYVCVMEKQQQKQ 243          
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Match: A0A6U0HVW1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0HVW1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.550e-23
Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   10 PLQLLSRMAPLALVQMAAGALALGEVSSLVANWR-EIR---EGWALYGVAITGVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNKSREVKALIEPP 408
            P+ LL  MAPLA+VQ    +   GEVSS+ + W  E+      + L+ V  +GV SFSLN CSL ANK+TSPLTL I AN+KQVL++A S++VF    + LN  G VVV+  S+ YS +S++E+  ++       PP
Sbjct:  127 PVDLLGHMAPLAMVQCLVLSFVTGEVSSIASRWEAELNPFVHPYPLFIVVTSGVFSFSLNICSLMANKLTSPLTLCIAANVKQVLLIAFSTIVFGTEITFLNGMGIVVVLAGSSWYSYVSMAEKGLNKVKVQPSSPP 263          
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Match: A0A7S2EE68_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EE68_TRICV)

HSP 1 Score: 101 bits (252), Expect = 1.130e-22
Identity = 61/137 (44.53%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   10 PLQLLSRMAPLALVQMAAGALALGEVSSLVANW-REIREG---WALYGVAITGVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNKSREVKALIEPP 408
            P+ LL  MAPLA++Q    +   GE+ S+   W  E+        L  V ++GV SFSLN CSL ANK+TSPLTL I AN+KQVL++A S+++F+   + LN FG VVV++ S RYS +SV E+ +    ++   PP
Sbjct:  208 PVDLLGHMAPLAMIQCLILSFLTGEIWSISRRWDAELNPSINPQPLSVVLLSGVFSFSLNICSLMANKLTSPLTLCIAANVKQVLMIAFSTIIFQTEITPLNGFGIVVVLVGSARYSYVSVLEKKRQDSAQSKEGPP 344          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10632.993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYJ9_ECTSI1.270e-8797.99TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1XZK4_9STRA8.450e-2646.77Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0F581_9STRA1.180e-2547.10Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2W4X8_9STRA1.430e-2444.44Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3HSE3_9STRA3.920e-2447.06Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A448YVT5_9STRA1.160e-2346.03TPT domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7S2VF30_9STRA2.110e-2344.17Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S0AFC0_9STRA3.030e-2347.29Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A6U0HVW1_9STRA5.550e-2345.26Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2EE68_TRICV1.130e-2244.53Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10632contigEcto-sp8_S_contig10632:5087..6565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score270.8
Seed ortholog evalue3.8e-70
Seed eggNOG ortholog2880.D7FYJ9
Model size450
KEGG koko:K15285
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-02_004290.1
Cds size447
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.6858501-CDS-Ecto-sp8_S_contig10632:5086..52901681143160.6858501-CDS-Ecto-sp8_S_contig10632:5086..5290Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10632 5087..5290 -
1681143160.6983347-CDS-Ecto-sp8_S_contig10632:6319..65621681143160.6983347-CDS-Ecto-sp8_S_contig10632:6319..6562Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10632 6320..6562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.7177148-UTR-Ecto-sp8_S_contig10632:6562..65651681143160.7177148-UTR-Ecto-sp8_S_contig10632:6562..6565Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10632 6563..6565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10632.993.1prot_Ecto-sp8_S_contig10632.993.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10632 5087..6562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10632.993.1

>prot_Ecto-sp8_S_contig10632.993.1 ID=prot_Ecto-sp8_S_contig10632.993.1|Name=mRNA_Ecto-sp8_S_contig10632.993.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=149bp
MPPLQLLSRMAPLALVQMAAGALALGEVSSLVANWREIREGWALYGVAIT
GVGSFSLNFCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLN
KFGFVVVILASTRYSMLSVSERNKSREVKALIEPPEIGIGKSLPLLPK*
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mRNA from alignment at Ecto-sp8_S_contig10632:5087..6565-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10632.993.1 ID=mRNA_Ecto-sp8_S_contig10632.993.1|Name=mRNA_Ecto-sp8_S_contig10632.993.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1479bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10632:5087..6565- (Ectocarpus species8 EcLAC_412)
CAGATGCCACCGCTCCAGCTGCTCTCGCGAATGGCGCCCCTAGCCCTGGT GCAGATGGCTGCGGGCGCGCTCGCTCTCGGGGAGGTCAGCAGCCTAGTCG CCAACTGGCGAGAGATCAGGGAGGGGTGGGCACTCTACGGGGTGGCGATT ACGGGGGTGGGCTCCTTCTCGCTGAACTTCTGCAGCCTGCAGGCGAACAA GGTCACCTCCCCGCTGACCCTTAGCATCATGGCCAACATCAAGCAGGTGC GTCACTGTCTGTTTTTCCCCCTTCTTTGTTTTTTTTTTTGTCGTAGTGTA TGCTTCGACGTATACCACAACGAGTTTATCTTTATGCATATGCGTAGATA ACGGATAACGGTCTAGGAACATTAGTAGCGATGAACCCATAAGCGTTTTT GCATTTTCTTCGAGGGGGACGTTCCGGTGTGGACGTTGTTTAGTTTTTTG CGTTGTCCGAGGGTAGATCTTGGATGTTGTTGTGTCATCCATCTCCATTT TTTGTTTAACCCTATGTCGAGAATAGCGGGGTTGGGGTAGAGGCTGAAAA TCAACGCTTGGTCTTGGTGCGTGGGGGAGGTGCCACCGCCGTACAGCAAA AGTGGGACTAGTTTTGTTCGTCTCGTCTTGGGCGCTACCATGAACGAACC AGCCAAGTAAGGAACGAGTGCCTTCAAGAGTGAAAGCGGGTACGGCACCA AGAGTTAGCCGCGATGAAGTGAATCGGACGGACGAAAGAGCGTACTGTAG CCGATGTAAGTAGGTAGAAGCGACACGGAGGACATGTTTGAGGCTAGGAG TGGGTACCAATGTCTTTGTGTTGTGTTGTTCCACCGCCGCTCCTTGCTCG CCGCACAGCATGCTGCTGCTGCTGCTGCTGCTGCACGAGTTTTCAGGAAA ACGTTCAGTACAAATATTACGATATTCGAGCATGATGATATTATAATGTT TGGCGCCACCCTACTGAAATTATGTTGTGATGCGACACACGCACATGCAG CTCACCTTAACCACGGCGTGACGGCGGTGCTATCCGACTATCTGTCTGTC TGTTTCTCTCTCTGGTTCTATGTGGTTGTGTTATCGTCGTCTCTCTTCCT CTCCCGACCATCTGTCTCTGTTTCTGTCTCTGTGCCTGCCCATCGTCGTG TCTCTGTCTGTCTCTCTCTCCGTGACTGTCTTATCGTCGTCTCTCCCGAC CGTCTCTCTCCCCCCCCCCCCCCTCTCTCTCTCCGTGGTTGTCTATTCGT CTTTTCTCCCTCTTCCGGCGTTTAGGTGTTGATCGTCGCCGCCAGCTCGG TCGTCTTCAAGGACACAGCTTCGACGCTGAACAAGTTTGGCTTCGTCGTC GTGATCCTCGCGAGCACCCGCTACAGCATGCTCAGCGTCTCGGAACGGAA TAAGAGTCGGGAGGTGAAGGCGCTGATCGAGCCACCCGAGATCGGCATCG GCAAGAGCTTACCTCTCCTGCCCAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10632:5087..6565-

>mRNA_Ecto-sp8_S_contig10632.993.1 ID=mRNA_Ecto-sp8_S_contig10632.993.1|Name=mRNA_Ecto-sp8_S_contig10632.993.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10632:5087..6565- (Ectocarpus species8 EcLAC_412)
ATGCCACCGCTCCAGCTGCTCTCGCGAATGGCGCCCCTAGCCCTGGTGCA
GATGGCTGCGGGCGCGCTCGCTCTCGGGGAGGTCAGCAGCCTAGTCGCCA
ACTGGCGAGAGATCAGGGAGGGGTGGGCACTCTACGGGGTGGCGATTACG
GGGGTGGGCTCCTTCTCGCTGAACTTCTGCAGCCTGCAGGCGAACAAGGT
CACCTCCCCGCTGACCCTTAGCATCATGGCCAACATCAAGCAGGTGTTGA
TCGTCGCCGCCAGCTCGGTCGTCTTCAAGGACACAGCTTCGACGCTGAAC
AAGTTTGGCTTCGTCGTCGTGATCCTCGCGAGCACCCGCTACAGCATGCT
CAGCGTCTCGGAACGGAATAAGAGTCGGGAGGTGAAGGCGCTGATCGAGC
CACCCGAGATCGGCATCGGCAAGAGCTTACCTCTCCTGCCCAAGTAG
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