mRNA_Ecto-sp8_S_contig106300.990.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106300.990.1
Unique NamemRNA_Ecto-sp8_S_contig106300.990.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Match: D8LBE2_ECTSI (Non ribosomal peptide synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBE2_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 1.050e-108
Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 1 
Query:    1 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQT 492
            GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAAD QGVAIGVKVGTGSTE QVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQT
Sbjct:   93 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADEQGVAIGVKVGTGSTETQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQT 256
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BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Match: A0A7S0WXH8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WXH8_9CHLO)

HSP 1 Score: 232 bits (592), Expect = 1.660e-74
Identity = 111/163 (68.10%), Postives = 139/163 (85.28%), Query Frame = 1 
Query:    1 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQ 489
            GVMYFT MKNLHEDEWER VD+NCKG + G+ AVL GM++R +GHI+NISSDAGR +FPSL VY A+K+FV A+S+GLR+E++GT +KVT IQPGD ATDL+M NTDKEAAD  GVAIG KVGTG   +QVL  ED+A+AV+YAVTAP+HV ++E+++EP+DQ
Sbjct:   92 GVMYFTLMKNLHEDEWERQVDINCKGVLNGVAAVLDGMVKRDAGHIINISSDAGRDVFPSLTVYSATKHFVWAISKGLRKELIGTKVKVTDIQPGDVATDLIMENTDKEAADALGVAIGQKVGTGLKRSQVLDVEDIASAVVYAVTAPAHVGIHELMIEPKDQ 254
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BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Match: A0A835ZEL1_9STRA (Non ribosomal peptide synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL1_9STRA)

HSP 1 Score: 229 bits (584), Expect = 2.890e-73
Identity = 115/164 (70.12%), Postives = 132/164 (80.49%), Query Frame = 1 
Query:    1 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQT 492
            GVMYFT+M +L EDEWE  VDVNCKG M G+GAVL GMI+RGSGHIVNISSDAGRR+FP+LAVY  +K+FVEA+SEGLRREVVGTG++VTTIQPGD +TDLV+NNTD   A             G+  N VLQP DVA AVLYAVTAP HVAVNE+++EPRDQT
Sbjct:   94 GVMYFTHMAHLREDEWEHMVDVNCKGVMNGVGAVLKGMIDRGSGHIVNISSDAGRRVFPALAVYSGTKFFVEALSEGLRREVVGTGVRVTTIQPGDVSTDLVVNNTDAATAAXXXXXXXXXXXXGADVNAVLQPSDVAGAVLYAVTAPPHVAVNEIMIEPRDQT 257
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BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Match: A0A6G8Q6J5_9ACTN (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Rubrobacter tropicus TaxID=2653851 RepID=A0A6G8Q6J5_9ACTN)

HSP 1 Score: 204 bits (518), Expect = 2.160e-63
Identity = 104/163 (63.80%), Postives = 127/163 (77.91%), Query Frame = 1 
Query:    1 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQ 489
            GVMYFT MKN+ E+EW+RTVDVNCKGT+  +GAVL GM+ERG GHIV ISSDAGRR+FP LAVY ASK+FVEA+S+GLR E  GTG+KVTTIQPG+ ATDL+  + D+EA    G   G +V         L PEDVAA+++YA++ P HVAVNE+LVEPRD+
Sbjct:   92 GVMYFTLMKNVREEEWDRTVDVNCKGTVNCVGAVLPGMLERGRGHIVTISSDAGRRVFPGLAVYSASKFFVEALSQGLRLETAGTGVKVTTIQPGNVATDLLELSGDEEALQQYGQPTGARV---------LDPEDVAASIVYALSQPDHVAVNEILVEPRDE 245
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BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Match: A0A6J4R0T1_9ACTN (Uncharacterized protein n=1 Tax=uncultured Rubrobacteraceae bacterium TaxID=349277 RepID=A0A6J4R0T1_9ACTN)

HSP 1 Score: 202 bits (515), Expect = 6.550e-63
Identity = 103/163 (63.19%), Postives = 129/163 (79.14%), Query Frame = 1 
Query:    1 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQ 489
            GVMY+T MKNL E+EWERTV+VNCKG++  +GAVL GM+ERGSGHIV ISSDAGR++FP LAVY ASK+FVEA+S+GLR E  GTG+KVTT+QPG+ AT+L   +TD+EA +  G         GS E +VL PEDVAA+V++A+  P HVAVNE+LVEP D+
Sbjct:   94 GVMYYTMMKNLREEEWERTVEVNCKGSINCVGAVLPGMLERGSGHIVTISSDAGRKVFPGLAVYSASKFFVEALSQGLRLETAGTGVKVTTVQPGNVATNLHSMSTDEEALEAYG---------GSGEARVLDPEDVAASVVHALMQPEHVAVNEILVEPSDE 247
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BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Match: A0A7W1DHM8_9ACTN (SDR family oxidoreductase n=2 Tax=Rubrobacteraceae bacterium TaxID=2740537 RepID=A0A7W1DHM8_9ACTN)

HSP 1 Score: 197 bits (502), Expect = 5.930e-61
Identity = 101/163 (61.96%), Postives = 125/163 (76.69%), Query Frame = 1 
Query:    1 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQ 489
            GVMY+T MKN  E+EWERTV+VNCKG +  +GAVL GM+ERG GHIV ISSDAGR++FP LAVY ASK+FVEA+S+GLR E  GTG+KVTTIQPG+ ATDL+  + D+EA +  G   G +V         L PEDVAA+V++A+  P HVAVNE+LVEPRD+
Sbjct:   93 GVMYYTLMKNRREEEWERTVEVNCKGALNCVGAVLPGMLERGRGHIVTISSDAGRKVFPGLAVYSASKFFVEALSQGLRLETAGTGVKVTTIQPGNVATDLISMSGDEEALEEYGQPGGARV---------LDPEDVAASVVHALVQPEHVAVNEILVEPRDE 246
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BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Match: A0A2N5KFC4_9ACTN (Oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5KFC4_9ACTN)

HSP 1 Score: 197 bits (500), Expect = 1.190e-60
Identity = 102/163 (62.58%), Postives = 124/163 (76.07%), Query Frame = 1 
Query:    1 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQ 489
            GVMY+T M+NL E+EWE+TV+VNCKGT+  +GAVL GM+ RG GHIV ISSDAGR++F  LAVY ASK+FVEA+S+GLR E  GTGLKVTTIQPG+ ATDL   +TD EA    G   G +V         L PEDVAA+++YA++ P HVAVNEVLVEPRD+
Sbjct:   93 GVMYYTLMRNLCEEEWEKTVEVNCKGTLNCVGAVLPGMVSRGRGHIVTISSDAGRKVFAGLAVYSASKFFVEALSQGLRLETAGTGLKVTTIQPGNVATDLAAMSTDGEALKLYGQPTGARV---------LDPEDVAASIVYALSQPEHVAVNEVLVEPRDE 246
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BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Match: A0A510HGT1_9ACTN (Oxidoreductase n=1 Tax=Rubrobacter xylanophilus TaxID=49319 RepID=A0A510HGT1_9ACTN)

HSP 1 Score: 196 bits (498), Expect = 2.250e-60
Identity = 98/163 (60.12%), Postives = 125/163 (76.69%), Query Frame = 1 
Query:    1 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQ 489
            GVMY+T M+NL  +EWERTV+VNCKG +  +GAVLGGM+ERG GHIV ISSDAGR++FP LAVY ASK+FVE +S+GLR E  GTG+KVTT+QPG+  T L+  ++D+EA +  G   G +V         L PEDVAA+V++A+T P HVAVNE+LVEPRD+
Sbjct:   91 GVMYYTLMRNLRTEEWERTVEVNCKGVLNCVGAVLGGMVERGRGHIVTISSDAGRKVFPGLAVYSASKFFVEGLSQGLRLETAGTGIKVTTVQPGNVDTGLLGMSSDREALERYGKPSGARV---------LDPEDVAASVVHALTQPEHVAVNEILVEPRDE 244
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BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Match: UPI0001CBBBDA (dehydrogenase/reductase SDR family member 11-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBBBDA)

HSP 1 Score: 195 bits (495), Expect = 7.690e-60
Identity = 99/162 (61.11%), Postives = 122/162 (75.31%), Query Frame = 1 
Query:    1 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRD 486
            GVMY+T MKNL+ED+WERT+DVNCKG + G+GAVL GMI RG GHIVN+SS+AGRR FP LAVY  +K+FVEAMS  LR+E++GTG+KVTTIQPGD  TDL   NTDKEA +        K    ST +  LQ  D+  AV+YAV+ P +V VNE+L+EPR+
Sbjct:   96 GVMYYTLMKNLNEDQWERTIDVNCKGVVNGVGAVLSGMISRGKGHIVNMSSNAGRRAFPGLAVYSGTKFFVEAMSSALRQELIGTGVKVTTIQPGDVKTDLAAENTDKEAIE--------KYDMSSTYD-TLQAADIGRAVVYAVSQPPYVGVNEILIEPRE 248
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Match: A0A6J4RDF8_9ACTN (3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=uncultured Rubrobacteraceae bacterium TaxID=349277 RepID=A0A6J4RDF8_9ACTN)

HSP 1 Score: 194 bits (494), Expect = 1.060e-59
Identity = 99/163 (60.74%), Postives = 123/163 (75.46%), Query Frame = 1 
Query:    1 GVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQ 489
            G+MY+T M+NL EDEWERTV+VNCKG +  +GAVL GM+ RG GH+V ISSDAGR++FP L+VY ASK+FVEA+S+GLR E  GTG+KVTTIQPG+ ATDL   +TD EA +  G            E +VL PEDVAA+V+YA+  P H AVNE+LVEPRD+
Sbjct:   96 GIMYYTLMRNLREDEWERTVEVNCKGALNCVGAVLPGMLARGRGHVVTISSDAGRKVFPGLSVYSASKFFVEALSQGLRLETAGTGIKVTTIQPGNVATDLSSLSTDVEALELYGQP---------GEARVLDPEDVAASVVYALRQPDHAAVNEILVEPRDE 249
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106300.990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBE2_ECTSI1.050e-10898.78Non ribosomal peptide synthase n=2 Tax=Ectocarpus ... [more]
A0A7S0WXH8_9CHLO1.660e-7468.10Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A835ZEL1_9STRA2.890e-7370.12Non ribosomal peptide synthase n=1 Tax=Tribonema m... [more]
A0A6G8Q6J5_9ACTN2.160e-6363.80SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A6J4R0T1_9ACTN6.550e-6363.19Uncharacterized protein n=1 Tax=uncultured Rubroba... [more]
A0A7W1DHM8_9ACTN5.930e-6161.96SDR family oxidoreductase n=2 Tax=Rubrobacteraceae... [more]
A0A2N5KFC4_9ACTN1.190e-6062.58Oxidoreductase n=1 Tax=Actinomycetia bacterium Tax... [more]
A0A510HGT1_9ACTN2.250e-6060.12Oxidoreductase n=1 Tax=Rubrobacter xylanophilus Ta... [more]
UPI0001CBBBDA7.690e-6061.11dehydrogenase/reductase SDR family member 11-like ... [more]
A0A6J4RDF8_9ACTN1.060e-5960.743-oxoacyl-[acyl-carrier protein] reductase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106300contigEcto-sp8_S_contig106300:10..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score315.8
Seed ortholog evalue1.1e-83
Seed eggNOG ortholog2880.D8LBE2
Model size495
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1205@2759
Cds size489
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.4714549-CDS-Ecto-sp8_S_contig106300:9..4981681143160.4714549-CDS-Ecto-sp8_S_contig106300:9..498Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106300 10..498 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.497792-UTR-Ecto-sp8_S_contig106300:498..5041681143160.497792-UTR-Ecto-sp8_S_contig106300:498..504Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig106300 499..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106300.990.1prot_Ecto-sp8_S_contig106300.990.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106300 10..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106300.990.1

>prot_Ecto-sp8_S_contig106300.990.1 ID=prot_Ecto-sp8_S_contig106300.990.1|Name=mRNA_Ecto-sp8_S_contig106300.990.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=163bp
MYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSD
AGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLV
MNNTDKEAADGQGVAIGVKVGTGSTENQVLQPEDVAAAVLYAVTAPSHVA
VNEVLVEPRDQT*
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mRNA from alignment at Ecto-sp8_S_contig106300:10..504-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106300.990.1 ID=mRNA_Ecto-sp8_S_contig106300.990.1|Name=mRNA_Ecto-sp8_S_contig106300.990.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=495bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106300:10..504- (Ectocarpus species8 EcLAC_412)
GGTGTGATGTACTTCACCAACATGAAGAACCTGCACGAGGATGAATGGGA
GCGAACGGTGGATGTCAACTGCAAGGGTACCATGTTTGGGATAGGGGCGG
TGTTGGGGGGAATGATTGAGCGCGGCAGCGGACATATTGTCAATATTTCC
TCGGATGCGGGCCGGCGGATTTTCCCATCCTTGGCTGTCTACTGCGCCTC
GAAGTACTTCGTCGAGGCGATGTCAGAAGGTTTGCGGCGCGAGGTTGTGG
GGACCGGGTTGAAGGTCACAACGATTCAGCCGGGAGACTGTGCGACGGAC
TTGGTAATGAACAACACCGACAAAGAGGCGGCAGACGGACAAGGTGTTGC
CATAGGGGTGAAGGTAGGCACCGGATCGACCGAAAACCAGGTGCTGCAGC
CCGAGGACGTCGCTGCAGCGGTTTTGTATGCTGTGACCGCCCCGTCTCAC
GTGGCGGTGAATGAGGTGCTTGTGGAGCCGAGGGATCAAACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106300:10..504-

>mRNA_Ecto-sp8_S_contig106300.990.1 ID=mRNA_Ecto-sp8_S_contig106300.990.1|Name=mRNA_Ecto-sp8_S_contig106300.990.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106300:10..504- (Ectocarpus species8 EcLAC_412)
ATGTACTTCACCAACATGAAGAACCTGCACGAGGATGAATGGGAGCGAAC
GGTGGATGTCAACTGCAAGGGTACCATGTTTGGGATAGGGGCGGTGTTGG
GGGGAATGATTGAGCGCGGCAGCGGACATATTGTCAATATTTCCTCGGAT
GCGGGCCGGCGGATTTTCCCATCCTTGGCTGTCTACTGCGCCTCGAAGTA
CTTCGTCGAGGCGATGTCAGAAGGTTTGCGGCGCGAGGTTGTGGGGACCG
GGTTGAAGGTCACAACGATTCAGCCGGGAGACTGTGCGACGGACTTGGTA
ATGAACAACACCGACAAAGAGGCGGCAGACGGACAAGGTGTTGCCATAGG
GGTGAAGGTAGGCACCGGATCGACCGAAAACCAGGTGCTGCAGCCCGAGG
ACGTCGCTGCAGCGGTTTTGTATGCTGTGACCGCCCCGTCTCACGTGGCG
GTGAATGAGGTGCTTGTGGAGCCGAGGGATCAAACGTGA
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