mRNA_Ecto-sp8_S_contig1063.989.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig1063.989.1 vs. uniprot
Match: D8LE12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE12_ECTSI) HSP 1 Score: 773 bits (1997), Expect = 5.820e-272 Identity = 569/645 (88.22%), Postives = 574/645 (88.99%), Query Frame = 1
Query: 1 RELGVDMTAMDWKSLLETEQNSGGGWGRPIPSPSPTDQSEHGCRSLSSSPTVQSSPQDNEQQFAPRASSEHALWHGGQLLQLQPTHPRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VGGVWGQQVAGPQGFPPRGLHGVGPPRAGLVSPAAPSPTAMKQGQEQTLLSMPLPXXXXXAMVSAQVGGVGGYGMVLPLRGSQLDGFPGGGGQGSCSPLGYXXXXXXXXXXXXXXXXXXXXXLHLPVLAPHAAVAAVQPHQVYGFGHVQQGTVAVGGGQVHHPSSHAGLSWAPGLVGQGPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPSSLGQRESGEQVPAGTSSSAQSLPGDVSGPAGGVGGGGASFSGAPSAGRMMQAPVPVALELRRQSSLPPLSGSSPQPAFTGAGARMAHTPPAITSGRLGFPPSGGGEKESDPRATXXXXXXXXXXXXXXXXXXXXXAEAWERERSRFGVRGNRPSPVESRIAAVAIAAQNAXXXXXXXXXXXXXXXXXXXXXX----VDPGVVPRDDSXXXXXXXXTIDSXXXXXXXXXXAPGFAEPAAKGTVELPARHPYATDDGGDALDVGLGELSLEEMGGGGDAAALPGLNEIASNSRR 1917
RELGVDMTAMDWKSLLETEQNSGG TDQSEHGCRSLSSSPTVQSSPQDNEQQFAPRASSEHALWHGGQLLQLQPTHPRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VGGVWGQQVAGPQG PPRGL GVGPP+AGLVSPAAPSPTAMKQGQEQTLLS PLPXXXXXAMVSAQVGGVGGYGMVLPLRGS LDGFP GGG+GSCSPLGY XXXXXXXXXXLHLPVLAPHAAVAAVQPHQVYGFGHVQQGTVAVGGGQVHH SSHAGLSWAPGLVGQGP G XXXXXXXXXXXXXXXXXXXXXXXXXXX PLPSSLGQRESGEQVPAGTSSSAQSLPGDVSGPAGGVGGGGASFSGAPSAG MMQAPVPVALELRRQSSLPPL GSSP+PAFTGAG RMAHTPPAITSGRLGFPPSGGGEK SDPRAT XXXXXXXXXXXXXAEAWERERSRFGVRGNRPSPVESRIAAVAIAA NAXXXXXXXXXXXXXXXXXXXXXX V PG VPRD+S T SXXXXXXXXXXAPGFAE AAKGT EL ARHPYATDDGGDALDVGLGELSLEE+GGGGDAAALPGLNEIASNSRR
Sbjct: 137 RELGVDMTAMDWKSLLETEQNSGGXXXXXXXXXXXTDQSEHGCRSLSSSPTVQSSPQDNEQQFAPRASSEHALWHGGQLLQLQPTHPRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGVWGQQVAGPQGLPPRGLQGVGPPQAGLVSPAAPSPTAMKQGQEQTLLSRPLPXXXXXAMVSAQVGGVGGYGMVLPLRGSPLDGFPSGGGRGSCSPLGYGLGGNGGNLTPXXXXXXXXXXLHLPVLAPHAAVAAVQPHQVYGFGHVQQGTVAVGGGQVHHRSSHAGLSWAPGLVGQGPHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTEPPPPLPSSLGQRESGEQVPAGTSSSAQSLPGDVSGPAGGVGGGGASFSGAPSAGGMMQAPVPVALELRRQSSLPPLLGSSPRPAFTGAGTRMAHTPPAITSGRLGFPPSGGGEKGSDPRATSDATGADAXXXXXXXXXXXXXAEAWERERSRFGVRGNRPSPVESRIAAVAIAAHNAXXXXXXXXXXXXXXXXXXXXXXXXXXVGPGAVPRDNSSPPEPAVATTGSXXXXXXXXXXAPGFAESAAKGTAELSARHPYATDDGGDALDVGLGELSLEEVGGGGDAAALPGLNEIASNSRR 781
BLAST of mRNA_Ecto-sp8_S_contig1063.989.1 vs. uniprot
Match: A0A6H5L5K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K1_9PHAE) HSP 1 Score: 700 bits (1807), Expect = 3.680e-239 Identity = 533/664 (80.27%), Postives = 542/664 (81.63%), Query Frame = 1
Query: 1 RELGVDMTAMDWKSLLETEQNSGGGWGRPIPSPSPTDQSE-----------HGCRSLSSSPTVQSSPQDNEQQFAPRASSEHALWHGGQLLQLQPTHPRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---VGGVWGQQVAGPQGFPPRGLHGVGPPRAGLVSPAAPSPTAMKQGQEQTLLSMPLPXXXXXAMVSAQVGGVGGYGMVLPLRGSQLDGFPGGGGQGSCSPLGYXXXXXXXXXXXXXXXXXXXXX-----LHLPVLAPHAAVAAVQPHQVYGFGHVQQGTVAVGGGQVHHPSSHAGLSWAPGLVGQGPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPSSLGQRESGEQVPAGTSSSAQSLPGDVSGPAGGVGGGGASFSGAPSAGRMMQAPVPVALELRRQSSLPPLSGSSPQPAFTGAGARMAHTPPAITSGRLGFPPSGGGEKESDPRATXXXXXXXXXXXXXXXXXXXXXAEAWERERSRFGVRGNRPSPVESRIAAVAIAAQNAXXXXXXXXXXXXXXXXXXXXXX---VDPGVVPRDDSXXXXXXXXTIDSXXXXXXXXXXA---PGFAEPAAKGTVELPARHPYATDDGGDALDVGLGELSLEEMGGGGDAAALPGLNEIASNSRR 1917
RELGVDMTAMDWKSLLETEQ+SGGG GRPIPS SPTDQSE HGCRSLSSSPTVQSSP+DNE QFAPRASSEHALWHGGQLLQLQPTHPRP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VGGVWGQQ AGPQG P RGL GVGPP+AGLVSPAAPSPTAMKQGQEQTLLSMPL AMVSAQVGGVGGYGMVLPL GS L+ F GGG QG CSPLGY XXXXXXXXX LHLPVLAPHAAVAAVQPHQVYGFGHVQQGT V GGQVHHPSSHAGLSWAPGLVGQGP G XXXXXXXXXXXXXXXXXXXXXXX PLPS+LGQRESGEQ P GTSSSAQSLPGDV+GP GGVGGG ASFSGAPSAG MMQAPVPVALE RRQSSLPPLSGSS QPAFT +GARMAHTP AI S RLGFPPSGGGEK SDPRA XXXXXXXXXXXXXX AEAWERERSRFGVRGNRPSPVESRIAAVAIAAQNAXXXXXXXXXXXXXXXXXXXXXX V PG VPRD+ T DS XXXXXXXX P FA AAKGT ELP RHPYATD+G DALDV LGELSLEEMGGG D ALPGLNEIASNSRR
Sbjct: 416 RELGVDMTAMDWKSLLETEQSSGGGGGRPIPSTSPTDQSEGTPQSPAGQNGHGCRSLSSSPTVQSSPRDNELQFAPRASSEHALWHGGQLLQLQPTHPRPTQQHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGVWGQQAAGPQGLPLRGLQGVGPPQAGLVSPAAPSPTAMKQGQEQTLLSMPLSPPPPPAMVSAQVGGVGGYGMVLPLHGSPLNRFLGGGSQGPCSPLGYGLGGNGGNLTPSXXXXXXXXXXXXXXLHLPVLAPHAAVAAVQPHQVYGFGHVQQGTAVVCGGQVHHPSSHAGLSWAPGLVGQGPHGGXXXXXXXXXXXXXXXXXXXXXXXEGVTEPPP---PLPSALGQRESGEQFPVGTSSSAQSLPGDVNGPTGGVGGGRASFSGAPSAGGMMQAPVPVALEARRQSSLPPLSGSSLQPAFTISGARMAHTPSAIASRRLGFPPSGGGEKGSDPRAASGATGSXXXXXXXXXXXXXXAAEAWERERSRFGVRGNRPSPVESRIAAVAIAAQNAXXXXXXXXXXXXXXXXXXXXXXXXAVGPGAVPRDNFSPPEPAVATTDSTAXXXXXXXXXXXXPSFAGSAAKGTAELPVRHPYATDNGVDALDVELGELSLEEMGGGDDTTALPGLNEIASNSRR 1076 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1063.989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1063.989.1 >prot_Ecto-sp8_S_contig1063.989.1 ID=prot_Ecto-sp8_S_contig1063.989.1|Name=mRNA_Ecto-sp8_S_contig1063.989.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=634bp MTAMDWKSLLETEQNSGGGWGRPIPSPSPTDQSEHGCRSLSSSPTVQSSPback to top mRNA from alignment at Ecto-sp8_S_contig1063:1..3283+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig1063.989.1 ID=mRNA_Ecto-sp8_S_contig1063.989.1|Name=mRNA_Ecto-sp8_S_contig1063.989.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3283bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1063:1..3283+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1063:1..3283+ >mRNA_Ecto-sp8_S_contig1063.989.1 ID=mRNA_Ecto-sp8_S_contig1063.989.1|Name=mRNA_Ecto-sp8_S_contig1063.989.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1902bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1063:1..3283+ (Ectocarpus species8 EcLAC_412)back to top |