mRNA_Ecto-sp8_S_contig106254.986.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106254.986.1
Unique NamemRNA_Ecto-sp8_S_contig106254.986.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Match: RS15A_DROME (40S ribosomal protein S15Aa n=145 Tax=Eukaryota TaxID=2759 RepID=RS15A_DROME)

HSP 1 Score: 255 bits (651), Expect = 7.850e-86
Identity = 121/130 (93.08%), Postives = 127/130 (97.69%), Query Frame = 1 
Query:   10 MVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEFEVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 399
            MVRMN LADAL+C+NNAEKRGKRQVLLRPCSKV+I+FLTVMMKHGYIGEFE+VDDHRSGKIVVNLTGRLNKCGVISPRFD+ I DIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
Sbjct:    1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
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BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Match: R9TI18_ACAPC (40S ribosomal protein S15a n=6 Tax=Arthropoda TaxID=6656 RepID=R9TI18_ACAPC)

HSP 1 Score: 253 bits (647), Expect = 3.200e-85
Identity = 119/130 (91.54%), Postives = 127/130 (97.69%), Query Frame = 1 
Query:   10 MVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEFEVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 399
            MVRMNSLADALRC+NNAEKRGKRQV++RPCSKVVIRFLTVMMKHGYIGEFE+VDDHR+GK+VVNLTGRLNKCGVISPRFD+ I DIEKWT NLLPSRQFGYVV+TTSGGIMDHEEARRKHLGGKILGFFF
Sbjct:    1 MVRMNSLADALRCINNAEKRGKRQVMIRPCSKVVIRFLTVMMKHGYIGEFEIVDDHRAGKVVVNLTGRLNKCGVISPRFDIGIRDIEKWTTNLLPSRQFGYVVMTTSGGIMDHEEARRKHLGGKILGFFF 130
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BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Match: A0A0U2V7I0_ACAPC (40S ribosomal protein S15a n=5 Tax=Calanoida TaxID=6833 RepID=A0A0U2V7I0_ACAPC)

HSP 1 Score: 252 bits (643), Expect = 1.300e-84
Identity = 118/130 (90.77%), Postives = 127/130 (97.69%), Query Frame = 1 
Query:   10 MVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEFEVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 399
            MVRMNSLADALRC+NNAEKRGKRQV++RPCS+VVIRFLTVMMKHGYIGEFE+VDDHR+GK+VVNLTGRLNKCGVISPRFD+ I DIEKWT NLLPSRQFGYVV+TTSGGIMDHEEARRKHLGGKILGFFF
Sbjct:    1 MVRMNSLADALRCINNAEKRGKRQVMIRPCSEVVIRFLTVMMKHGYIGEFEIVDDHRAGKVVVNLTGRLNKCGVISPRFDIGIRDIEKWTTNLLPSRQFGYVVMTTSGGIMDHEEARRKHLGGKILGFFF 130
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BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Match: A0A158NEF9_ATTCE (Uncharacterized protein n=8 Tax=Neoptera TaxID=33340 RepID=A0A158NEF9_ATTCE)

HSP 1 Score: 249 bits (637), Expect = 1.070e-83
Identity = 117/130 (90.00%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:   10 MVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEFEVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 399
            MVRMN L+DAL+ +NNAEKRGKRQVLLRPCSKV+++FLTVMMKHGYIGEFE+VDDHRSGK+VVNLTGRLNKCGVISPRFD+ I DIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
Sbjct:    1 MVRMNVLSDALKAINNAEKRGKRQVLLRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRSGKVVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
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BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Match: A0A0J7KA13_LASNI (40s ribosomal protein s15a n=4 Tax=Neoptera TaxID=33340 RepID=A0A0J7KA13_LASNI)

HSP 1 Score: 250 bits (639), Expect = 1.110e-83
Identity = 117/131 (89.31%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:    7 IMVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEFEVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 399
            +MVRMN L+DAL+ +NNAEKRGKRQVLLRPCSKV+++FLTVMMKHGYIGEFE+VDDHRSGK+VVNLTGRLNKCGVISPRFD+ I DIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
Sbjct:   22 VMVRMNVLSDALKSINNAEKRGKRQVLLRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRSGKVVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 152
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BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Match: A0A195CPK0_9HYME (40S ribosomal protein S15a (Fragment) n=2 Tax=Attini TaxID=143999 RepID=A0A195CPK0_9HYME)

HSP 1 Score: 249 bits (637), Expect = 1.360e-83
Identity = 117/130 (90.00%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:   10 MVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEFEVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 399
            MVRMN L+DAL+ +NNAEKRGKRQVLLRPCSKV+++FLTVMMKHGYIGEFE+VDDHRSGK+VVNLTGRLNKCGVISPRFD+ I DIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
Sbjct:    8 MVRMNVLSDALKAINNAEKRGKRQVLLRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRSGKVVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 137
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BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Match: E1ZZB6_CAMFO (40S ribosomal protein S15a n=6 Tax=Formicidae TaxID=36668 RepID=E1ZZB6_CAMFO)

HSP 1 Score: 249 bits (636), Expect = 1.520e-83
Identity = 117/130 (90.00%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:   10 MVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEFEVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 399
            MVRMN L+DAL+ +NNAEKRGKRQVLLRPCSKV+++FLTVMMKHGYIGEFE+VDDHRSGK+VVNLTGRLNKCGVISPRFD+ I DIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
Sbjct:    1 MVRMNVLSDALKSINNAEKRGKRQVLLRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRSGKVVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
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BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Match: E2B3K1_HARSA (40S ribosomal protein S15a n=3 Tax=Ponerini TaxID=141711 RepID=E2B3K1_HARSA)

HSP 1 Score: 248 bits (632), Expect = 6.210e-83
Identity = 116/130 (89.23%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:   10 MVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEFEVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 399
            MVRMN L+DAL+ +NNAEKRGKRQVLLRPCSKV+++FLTVMMKHGYIGEFE+VDDHRSGK+VVNLTGRLNKCGVISPRFD+ I DIEKWTNNLLPSRQFG+VVLTTSGGIMDHEEARRKHLGGKILGFFF
Sbjct:    1 MVRMNVLSDALKSINNAEKRGKRQVLLRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRSGKVVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGFVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
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BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Match: A0A2D0S6J0_ICTPU (40S ribosomal protein S15a n=7 Tax=Euteleostomi TaxID=117571 RepID=A0A2D0S6J0_ICTPU)

HSP 1 Score: 246 bits (627), Expect = 4.690e-82
Identity = 113/133 (84.96%), Postives = 126/133 (94.74%), Query Frame = 1 
Query:    1 EYIMVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEFEVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 399
            E IMVRMN LADAL+C+NNAEKRGKRQVL+RPCSKV++RFLTVMMKHGYIGEFE++DDHR+GKIVVNLTGRLNKCGVISPRFD+ + D+EKW NNLLPSRQFG++VLTTS GIMDHEEARRKH GGKILGFFF
Sbjct:    6 ESIMVRMNVLADALKCINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 138
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BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Match: J3JWG7_DENPD (Uncharacterized protein n=7 Tax=Polyphaga TaxID=41084 RepID=J3JWG7_DENPD)

HSP 1 Score: 245 bits (626), Expect = 5.100e-82
Identity = 116/130 (89.23%), Postives = 125/130 (96.15%), Query Frame = 1 
Query:   10 MVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEFEVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 399
            MVRMN L+DAL+ +NNAEKRGKRQVL+RPCSKV+++FLTVMMKHGYIGEFE+VDDHRSGKIVVNLTGRLNKCGVISPRFD+ I  IEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF
Sbjct:    1 MVRMNVLSDALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPITHIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106254.986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RS15A_DROME7.850e-8693.0840S ribosomal protein S15Aa n=145 Tax=Eukaryota Ta... [more]
R9TI18_ACAPC3.200e-8591.5440S ribosomal protein S15a n=6 Tax=Arthropoda TaxI... [more]
A0A0U2V7I0_ACAPC1.300e-8490.7740S ribosomal protein S15a n=5 Tax=Calanoida TaxID... [more]
A0A158NEF9_ATTCE1.070e-8390.00Uncharacterized protein n=8 Tax=Neoptera TaxID=333... [more]
A0A0J7KA13_LASNI1.110e-8389.3140s ribosomal protein s15a n=4 Tax=Neoptera TaxID=... [more]
A0A195CPK0_9HYME1.360e-8390.0040S ribosomal protein S15a (Fragment) n=2 Tax=Atti... [more]
E1ZZB6_CAMFO1.520e-8390.0040S ribosomal protein S15a n=6 Tax=Formicidae TaxI... [more]
E2B3K1_HARSA6.210e-8389.2340S ribosomal protein S15a n=3 Tax=Ponerini TaxID=... [more]
A0A2D0S6J0_ICTPU4.690e-8284.9640S ribosomal protein S15a n=7 Tax=Euteleostomi Ta... [more]
J3JWG7_DENPD5.100e-8289.23Uncharacterized protein n=7 Tax=Polyphaga TaxID=41... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106254contigEcto-sp8_S_contig106254:42..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score258.5
Seed ortholog evalue1.7e-66
Seed eggNOG ortholog7217.FBpp0122694
Preferred nameRpS15Aa
Model size402
KEGG koko:K02957
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.Structural constituent of ribosome. It is involved in the biological process described with
EggNOG OGs3A1RU@33154,3BPBA@33208,3D6C5@33213,3SM53@50557,41YNI@6656,452X1@7147,45TSH@7214,COG0096@1,KOG1754@2759
Cds size393
COG Functional cat.J
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.2809682-UTR-Ecto-sp8_S_contig106254:41..501681143160.2809682-UTR-Ecto-sp8_S_contig106254:41..50Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig106254 42..50 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.2930937-CDS-Ecto-sp8_S_contig106254:50..4431681143160.2930937-CDS-Ecto-sp8_S_contig106254:50..443Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106254 51..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106254.986.1prot_Ecto-sp8_S_contig106254.986.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106254 51..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106254.986.1

>prot_Ecto-sp8_S_contig106254.986.1 ID=prot_Ecto-sp8_S_contig106254.986.1|Name=mRNA_Ecto-sp8_S_contig106254.986.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=131bp
MVRMNSLADALRCMNNAEKRGKRQVLLRPCSKVVIRFLTVMMKHGYIGEF
EVVDDHRSGKIVVNLTGRLNKCGVISPRFDMAIGDIEKWTNNLLPSRQFG
YVVLTTSGGIMDHEEARRKHLGGKILGFFF*
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mRNA from alignment at Ecto-sp8_S_contig106254:42..443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106254.986.1 ID=mRNA_Ecto-sp8_S_contig106254.986.1|Name=mRNA_Ecto-sp8_S_contig106254.986.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=402bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106254:42..443+ (Ectocarpus species8 EcLAC_412)
GAGTACATCATGGTTCGTATGAACTCACTGGCTGACGCCCTCAGGTGCAT
GAACAATGCAGAGAAGAGAGGAAAGAGACAGGTCCTCCTCAGGCCTTGCT
CCAAGGTCGTGATCAGGTTCCTCACCGTCATGATGAAGCACGGCTACATC
GGGGAGTTCGAGGTTGTGGATGATCACAGATCTGGCAAAATCGTTGTCAA
CTTGACTGGAAGACTCAACAAATGCGGAGTCATCTCACCAAGGTTCGACA
TGGCAATCGGTGACATCGAGAAGTGGACCAACAATCTCCTGCCCTCAAGA
CAGTTCGGATATGTCGTCCTCACCACTTCCGGTGGCATCATGGACCACGA
AGAGGCAAGAAGGAAGCACCTTGGAGGCAAAATTCTGGGATTTTTCTTCT
AA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106254:42..443+

>mRNA_Ecto-sp8_S_contig106254.986.1 ID=mRNA_Ecto-sp8_S_contig106254.986.1|Name=mRNA_Ecto-sp8_S_contig106254.986.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106254:42..443+ (Ectocarpus species8 EcLAC_412)
ATGGTTCGTATGAACTCACTGGCTGACGCCCTCAGGTGCATGAACAATGC
AGAGAAGAGAGGAAAGAGACAGGTCCTCCTCAGGCCTTGCTCCAAGGTCG
TGATCAGGTTCCTCACCGTCATGATGAAGCACGGCTACATCGGGGAGTTC
GAGGTTGTGGATGATCACAGATCTGGCAAAATCGTTGTCAACTTGACTGG
AAGACTCAACAAATGCGGAGTCATCTCACCAAGGTTCGACATGGCAATCG
GTGACATCGAGAAGTGGACCAACAATCTCCTGCCCTCAAGACAGTTCGGA
TATGTCGTCCTCACCACTTCCGGTGGCATCATGGACCACGAAGAGGCAAG
AAGGAAGCACCTTGGAGGCAAAATTCTGGGATTTTTCTTCTAA
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