mRNA_Ecto-sp8_S_contig10625.985.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp8_S_contig10625.985.1
Unique Name	mRNA_Ecto-sp8_S_contig10625.985.1
Type	mRNA
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)

Homology

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BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Match: D7G0S6_ECTSI (Similar to ubiquitin specific peptidase 15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 2.590e-47
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:    1 WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 243
            WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK
Sbjct:  575 WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 655

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BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Match: A0A8B8B8Q2_CRAVI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8B8Q2_CRAVI)

HSP 1 Score: 110 bits (276), Expect = 2.100e-26
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 1

Query:    1 WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 243
            WK E+NEDNPLGMGG++A +YA L    WSG YS  VP   K  V ++AP F+GYQQ D+ EL++FLLDG+HEDLNR+ KK
Sbjct:  298 WKSEINEDNPLGMGGEIARSYADLIKTMWSGRYSYTVPRAFKIQVGKFAPQFSGYQQQDSQELLAFLLDGLHEDLNRIKKK 378

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BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Match: A0A397CIK1_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CIK1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.200e-26
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 1

Query:    1 WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 243
            + RE+N  NPLGMGGK+A AYA L +  WSGE  VV P+ +K V+ +YAP FAGY QHD+ E++SF+LDGIHEDLNRV +K
Sbjct:  617 YMREINPRNPLGMGGKIAKAYAKLMEKMWSGESKVVTPSDLKYVIGEYAPAFAGYAQHDSQEVLSFILDGIHEDLNRVLEK 697

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BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Match: K1QBA4_CRAGI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QBA4_CRAGI)

HSP 1 Score: 109 bits (272), Expect = 7.270e-26
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1

Query:    1 WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 243
            WK E+NEDNPLGMGG++A +Y  L    WSG+YS  VP   K  V ++AP F+GYQQ D+ EL++FLLDG+HEDLNR+ KK
Sbjct:  287 WKEEINEDNPLGMGGEIARSYTELIKTMWSGKYSYTVPRYFKVQVGKFAPQFSGYQQQDSQELLAFLLDGLHEDLNRIKKK 367

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BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Match: W4GM05_9STRA (USP domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GM05_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.310e-26
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 1

Query:    1 WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 243
            + RE+N  NPLGMGGK+A AYA L +  WSGE  VV P+ +K V+ +YAP FAGY QHD+ E++SF+LDGIHEDLNRV +K
Sbjct:  498 YMREINPRNPLGMGGKIAKAYAKLMEKMWSGESKVVTPSDLKYVIGEYAPAFAGYAQHDSQEVLSFILDGIHEDLNRVLEK 578

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BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Match: A0A397DTH8_9STRA (USP domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DTH8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.320e-26
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 1

Query:    1 WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 243
            + RE+N  NPLGMGGK+A AYA L +  WSGE  VV P+ +K V+ +YAP FAGY QHD+ E++SF+LDGIHEDLNRV +K
Sbjct:  574 YMREINPRNPLGMGGKIAKAYAKLMEKMWSGESKVVTPSDLKYVIGEYAPAFAGYAQHDSQEVLSFILDGIHEDLNRVLEK 654

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BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Match: A0A3R7WLY4_9STRA (USP domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WLY4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.350e-26
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 1

Query:    1 WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 243
            + RE+N  NPLGMGGK+A AYA L +  WSGE  VV P+ +K V+ +YAP FAGY QHD+ E++SF+LDGIHEDLNRV +K
Sbjct:  730 YMREINPRNPLGMGGKIAKAYAKLMEKMWSGESKVVTPSDLKYVIGEYAPAFAGYAQHDSQEVLSFILDGIHEDLNRVLEK 810

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BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Match: A0A8B6DHW2_MYTGA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DHW2_MYTGA)

HSP 1 Score: 108 bits (271), Expect = 9.800e-26
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 1

Query:    1 WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 243
            W  EVNE NPLGMGG++A +YA L    WSG+YS  VP   K  V ++AP F+GYQQ D+ EL++FLLDG+HEDLNR+HKK
Sbjct:  141 WISEVNESNPLGMGGEIAKSYAELIKVMWSGKYSHTVPRNFKVAVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRIHKK 221

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BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Match: A0A8K1CDP4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDP4_PYTOL)

HSP 1 Score: 108 bits (271), Expect = 9.970e-26
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1

Query:    1 WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 243
            ++++VNEDNPLGM G +A  +A L    W GEY+VV P T+K V+ QYAP FAGYQQ D+ E+M+F+LDG+HEDLNRV KK
Sbjct:  509 FEKDVNEDNPLGMKGMIAREFAKLIKRMWGGEYTVVSPTTLKAVIGQYAPQFAGYQQQDSQEVMNFILDGLHEDLNRVRKK 589

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BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Match: W7U3R5_9STRA (Ubiquitin carboxyl-terminal hydrolase 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3R5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.000e-25
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 1

Query:   10 EVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAPMFAGYQQHDASELMSFLLDGIHEDLNRVHKK 243
            ++NEDNPLG  G +A  YA L  D WSG ++ + P   K+V+SQYAP FAGYQQHD+ ELM+FLLDG+HEDLNRV +K
Sbjct:  622 QINEDNPLGKQGVLARTYAKLLKDMWSGRFTFIYPTEFKRVISQYAPQFAGYQQHDSQELMNFLLDGLHEDLNRVRQK 699

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig10625.985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G0S6_ECTSI	2.590e-47	100.00	Similar to ubiquitin specific peptidase 15 n=2 Tax...	[more]
A0A8B8B8Q2_CRAVI	2.100e-26	60.49	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Cras...	[more]
A0A397CIK1_9STRA	7.200e-26	61.73	USP domain-containing protein (Fragment) n=1 Tax=A...	[more]
K1QBA4_CRAGI	7.270e-26	59.26	Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Cras...	[more]
W4GM05_9STRA	7.310e-26	61.73	USP domain-containing protein n=8 Tax=Aphanomyces ...	[more]
A0A397DTH8_9STRA	7.320e-26	61.73	USP domain-containing protein (Fragment) n=3 Tax=A...	[more]
A0A3R7WLY4_9STRA	7.350e-26	61.73	USP domain-containing protein n=2 Tax=Aphanomyces ...	[more]
A0A8B6DHW2_MYTGA	9.800e-26	60.49	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Myti...	[more]
A0A8K1CDP4_PYTOL	9.970e-26	60.49	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
W7U3R5_9STRA	1.000e-25	61.54	Ubiquitin carboxyl-terminal hydrolase 4 n=2 Tax=Mo...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig10625	contig	Ecto-sp8_S_contig10625:5942..6764 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	171.4
Seed ortholog evalue	1.9e-40
Seed eggNOG ortholog	2880.D7G0S6
Model size	267
KEGG ko	ko:K11835,ko:K11839
KEGG Pathway	ko04137,ko04144,ko04934,map04137,map04144,map04934
Hectar predicted targeting category	other localisation
Exons	2
EggNOG free text desc.	ubiquitinyl hydrolase activity
EggNOG OGs	COG5560@1,KOG1870@2759
EC	3.4.19.12
Cds size	267
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01002,ko04121,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681143160.233309-CDS-Ecto-sp8_S_contig10625:5941..6127	1681143160.233309-CDS-Ecto-sp8_S_contig10625:5941..6127	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig10625 5942..6127 -
1681143160.2435904-CDS-Ecto-sp8_S_contig10625:6683..6764	1681143160.2435904-CDS-Ecto-sp8_S_contig10625:6683..6764	Ectocarpus species8 EcLAC_412	CDS	Ecto-sp8_S_contig10625 6684..6764 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig10625.985.1	prot_Ecto-sp8_S_contig10625.985.1	Ectocarpus species8 EcLAC_412	polypeptide	Ecto-sp8_S_contig10625 5942..6764 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp8_S_contig10625:5942..6764-
coding sequence from alignment at Ecto-sp8_S_contig10625:5942..6764-

protein sequence of mRNA_Ecto-sp8_S_contig10625.985.1

>prot_Ecto-sp8_S_contig10625.985.1 ID=prot_Ecto-sp8_S_contig10625.985.1|Name=mRNA_Ecto-sp8_S_contig10625.985.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=89bp
WKREVNEDNPLGMGGKMAAAYAGLNDDAWSGEYSVVVPNTVKKVVSQYAP
MFAGYQQHDASELMSFLLDGIHEDLNRVHKKVLLLSDR*

mRNA from alignment at Ecto-sp8_S_contig10625:5942..6764-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp8_S_contig10625.985.1 ID=mRNA_Ecto-sp8_S_contig10625.985.1|Name=mRNA_Ecto-sp8_S_contig10625.985.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=823bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10625:5942..6764- (Ectocarpus species8 EcLAC_412)
TGGAAGCGGGAGGTTAACGAGGACAACCCCCTCGGCATGGGCGGCAAGAT
GGCGGCGGCGTACGCGGGCCTCAACGACGATGTGAGAGGAAGGGGGATGC
TGTATTTGAAGTGGCTTAACGATGTGTGTAAGAGAGGAAGTTGCTATATA
TGTGAAGTGGCTGATGGCGGTGTGTGACATTGTGACGAGAGAGAGAGAGA
GAGAGCGAGAGAGGGAGATGATATGTTTGGCGTGACTTCACGGCGATGTT
TGAGAGAGATGGGGGGAGATGCTGTAGAAGTGGCTTCATGATGTGAGAGG
GAGGGAAATGCTATGTTTTGAGGTGACATGGCGATGTGAGAGAGAGGGGG
GGAGATGCTACTATTTTTTTGAGTGACTTGAAGATGACGTTCGTGAGAGG
GGACGAGGAGCAATAGCAGTGACGAGAGAGAGAGAGAGAAGGAGATGTGA
TAGAAGTGACATAACGAGGGATGGAGGGAAAGAGAAGCAATACAAACGAC
TTTATTTATAAGAACTACGCCGCCGTTCGACCGTGGTTTCACCTCAAACG
GGTAGTCTTTTCTTTCATCGTACGCGTAGTTTCTTAACAACACAAAAACC
TCTTGTATTACGCTCGTGGGACTTTGTCGTCACGCAGGCGTGGTCGGGGG
AGTACTCCGTCGTGGTGCCCAACACGGTGAAGAAGGTGGTGTCCCAGTAC
GCGCCCATGTTCGCGGGGTACCAGCAGCACGACGCCAGCGAGCTCATGAG
CTTCCTGCTGGACGGCATCCACGAGGACCTCAACCGGGTCCACAAGAAGG
TACTTCTGCTGTCCGACCGCTGA

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10625:5942..6764-

>mRNA_Ecto-sp8_S_contig10625.985.1 ID=mRNA_Ecto-sp8_S_contig10625.985.1|Name=mRNA_Ecto-sp8_S_contig10625.985.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10625:5942..6764- (Ectocarpus species8 EcLAC_412)
TGGAAGCGGGAGGTTAACGAGGACAACCCCCTCGGCATGGGCGGCAAGAT
GGCGGCGGCGTACGCGGGCCTCAACGACGATGCGTGGTCGGGGGAGTACT
CCGTCGTGGTGCCCAACACGGTGAAGAAGGTGGTGTCCCAGTACGCGCCC
ATGTTCGCGGGGTACCAGCAGCACGACGCCAGCGAGCTCATGAGCTTCCT
GCTGGACGGCATCCACGAGGACCTCAACCGGGTCCACAAGAAGGTACTTC
TGCTGTCCGACCGCTGA