mRNA_Ecto-sp8_S_contig106238.981.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106238.981.1
Unique NamemRNA_Ecto-sp8_S_contig106238.981.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106238.981.1 vs. uniprot
Match: A0A7X2KFL1_9PROT (Prolyl oligopeptidase family serine peptidase n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KFL1_9PROT)

HSP 1 Score: 193 bits (491), Expect = 6.710e-60
Identity = 91/100 (91.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    1 MPGSTLRQSLIALICLSGIAGCAPSLPPSISLDQAQTQVIPHLRTFQPAGTGAHPTVIFLHGASDKSWYSVYDDMAQRFVANGYGIVFVDMYSGRGSNGQ 300
            MPGSTL++ L+ALICLSGI GCAPSLPPSISLDQAQTQV+P+LRTFQPAGTGAHPTVIFLHGASDKSWYSVYDDM QRFVANGYGIVF+DMYSGRGSNGQ
Sbjct:    1 MPGSTLKRKLMALICLSGIVGCAPSLPPSISLDQAQTQVVPYLRTFQPAGTGAHPTVIFLHGASDKSWYSVYDDMVQRFVANGYGIVFLDMYSGRGSNGQ 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106238.981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X2KFL1_9PROT6.710e-6091.00Prolyl oligopeptidase family serine peptidase n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106238contigEcto-sp8_S_contig106238:2..301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categorysignal peptide
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.0544002-CDS-Ecto-sp8_S_contig106238:1..3011681143160.0544002-CDS-Ecto-sp8_S_contig106238:1..301Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106238 2..301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106238.981.1prot_Ecto-sp8_S_contig106238.981.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106238 2..301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106238.981.1

>prot_Ecto-sp8_S_contig106238.981.1 ID=prot_Ecto-sp8_S_contig106238.981.1|Name=mRNA_Ecto-sp8_S_contig106238.981.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
MPGSTLRQSLIALICLSGIAGCAPSLPPSISLDQAQTQVIPHLRTFQPAG
TGAHPTVIFLHGASDKSWYSVYDDMAQRFVANGYGIVFVDMYSGRGSNGQ
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mRNA from alignment at Ecto-sp8_S_contig106238:2..301-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106238.981.1 ID=mRNA_Ecto-sp8_S_contig106238.981.1|Name=mRNA_Ecto-sp8_S_contig106238.981.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106238:2..301- (Ectocarpus species8 EcLAC_412)
ATGCCCGGTTCGACGTTGAGGCAGAGTCTGATTGCACTGATATGTCTGTC
TGGGATTGCTGGCTGTGCGCCATCTTTACCGCCCAGCATTTCACTGGATC
AGGCCCAGACGCAGGTTATTCCGCATCTCAGGACGTTTCAGCCCGCCGGG
ACCGGGGCGCATCCGACGGTTATTTTCCTGCACGGTGCGAGCGATAAAAG
CTGGTACTCCGTCTATGACGATATGGCGCAGCGGTTTGTCGCGAACGGCT
ATGGAATCGTCTTTGTCGACATGTATTCCGGGCGCGGGTCGAATGGGCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106238:2..301-

>mRNA_Ecto-sp8_S_contig106238.981.1 ID=mRNA_Ecto-sp8_S_contig106238.981.1|Name=mRNA_Ecto-sp8_S_contig106238.981.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106238:2..301- (Ectocarpus species8 EcLAC_412)
ATGCCCGGTTCGACGTTGAGGCAGAGTCTGATTGCACTGATATGTCTGTC
TGGGATTGCTGGCTGTGCGCCATCTTTACCGCCCAGCATTTCACTGGATC
AGGCCCAGACGCAGGTTATTCCGCATCTCAGGACGTTTCAGCCCGCCGGG
ACCGGGGCGCATCCGACGGTTATTTTCCTGCACGGTGCGAGCGATAAAAG
CTGGTACTCCGTCTATGACGATATGGCGCAGCGGTTTGTCGCGAACGGCT
ATGGAATCGTCTTTGTCGACATGTATTCCGGGCGCGGGTCGAATGGGCAG
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