mRNA_Ecto-sp8_S_contig106225.978.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106225.978.1
Unique NamemRNA_Ecto-sp8_S_contig106225.978.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106225.978.1 vs. uniprot
Match: D8LQT5_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT5_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.560e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 AVENRHLEVVRTLAEAGADVNLIYEDGYAEVPPLVT 108
            AVEN HLEVVRTLAEAGADVNLIYEDGYAEVPPLVT
Sbjct:  131 AVENGHLEVVRTLAEAGADVNLIYEDGYAEVPPLVT 166
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106225.978.1 vs. uniprot
Match: A0A6H5KEN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.240e-12
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 AVENRHLEVVRTLAEAGADVNLIYEDGYAEVPPLVTAAK 117
            AVEN HLEVVRTL EAGADVNLIYEDG  EVPPLVTAAK
Sbjct:  137 AVENGHLEVVRTLVEAGADVNLIYEDGCDEVPPLVTAAK 175
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106225.978.1 vs. uniprot
Match: A0A6H5KST3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.330e-12
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 AVENRHLEVVRTLAEAGADVNLIYEDGYAEVPPLVTAAK 117
            AVEN HLEVVRTL EAGADVNLIYEDG  EVPPLVTAAK
Sbjct:  137 AVENGHLEVVRTLVEAGADVNLIYEDGCDEVPPLVTAAK 175
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106225.978.1 vs. uniprot
Match: D8LQT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.250e-12
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 AVENRHLEVVRTLAEAGADVNLIYEDGYAEVPPLVTA 111
            AVEN HLEVVRTLAEAGADVNLIYED Y EVPPLVTA
Sbjct:  128 AVENGHLEVVRTLAEAGADVNLIYEDRYVEVPPLVTA 164
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106225.978.1 vs. uniprot
Match: A0A7S0N4A7_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N4A7_9CHLO)

HSP 1 Score: 47.0 bits (110), Expect = 5.350e-5
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 AVENRHLEVVRTLAEAGADVNLIYEDGYAEVPPLVTAAKQGNVDVALVLLDAGADVN 171
            AVE   +E+VR LAE GAD+ L   +G+    PL  AA+Q + +V   L++AGADVN
Sbjct:    3 AVERGQVEMVRALAELGADLCLADPEGWT---PLCMAAEQNHTEVVTNLVEAGADVN 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106225.978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LQT5_ECTSI3.560e-1397.22Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
A0A6H5KEN5_9PHAE2.240e-1289.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KST3_9PHAE2.330e-1289.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQT4_ECTSI4.250e-1291.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0N4A7_9CHLO5.350e-547.37Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106225contigEcto-sp8_S_contig106225:1..174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score71.6
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D8LQT5
Model size174
KEGG koko:K21440
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size174
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143159.910874-CDS-Ecto-sp8_S_contig106225:0..1741681143159.910874-CDS-Ecto-sp8_S_contig106225:0..174Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106225 1..174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106225.978.1prot_Ecto-sp8_S_contig106225.978.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106225 1..174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106225.978.1

>prot_Ecto-sp8_S_contig106225.978.1 ID=prot_Ecto-sp8_S_contig106225.978.1|Name=mRNA_Ecto-sp8_S_contig106225.978.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=58bp
AVENRHLEVVRTLAEAGADVNLIYEDGYAEVPPLVTAAKQGNVDVALVLL
DAGADVNG
back to top

mRNA from alignment at Ecto-sp8_S_contig106225:1..174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106225.978.1 ID=mRNA_Ecto-sp8_S_contig106225.978.1|Name=mRNA_Ecto-sp8_S_contig106225.978.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106225:1..174+ (Ectocarpus species8 EcLAC_412)
GCAGTGGAAAACCGCCACCTTGAGGTGGTGCGTACGCTGGCCGAGGCCGG
AGCAGATGTCAACCTTATCTACGAGGACGGTTATGCCGAAGTTCCCCCTC
TGGTCACTGCCGCGAAACAGGGAAATGTAGATGTGGCGCTCGTCCTGCTT
GACGCGGGGGCTGACGTGAACGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106225:1..174+

>mRNA_Ecto-sp8_S_contig106225.978.1 ID=mRNA_Ecto-sp8_S_contig106225.978.1|Name=mRNA_Ecto-sp8_S_contig106225.978.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106225:1..174+ (Ectocarpus species8 EcLAC_412)
GCAGTGGAAAACCGCCACCTTGAGGTGGTGCGTACGCTGGCCGAGGCCGG
AGCAGATGTCAACCTTATCTACGAGGACGGTTATGCCGAAGTTCCCCCTC
TGGTCACTGCCGCGAAACAGGGAAATGTAGATGTGGCGCTCGTCCTGCTT
GACGCGGGGGCTGACGTGAACGGC
back to top