mRNA_Ecto-sp8_S_contig1062.976.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1062.976.1
Unique NamemRNA_Ecto-sp8_S_contig1062.976.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1062.976.1 vs. uniprot
Match: A0A6H5L9T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9T3_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 5.370e-112
Identity = 182/218 (83.49%), Postives = 186/218 (85.32%), Query Frame = 2 
Query:    2 DCRVVTEAFAHPPVPRTRASGRVTAGNNRGLAVIRRRAPAGFFRSGMAVSSSRPEGGAGEEGQRRRPMHRGASGGGDLDLKGAAPPHXXXXXXXXXXXXALAPLRQTAXXXXXXVLMLASTEQDIMTAMMGLDPSLATSTAAQPAMALPKEEGPQAKGGKAPSMGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH 655
            DCRV+TEAFAHPPVPRT ASGR TAGN+RGLAV+R RAPA FFRSG  VSSSRPEG AGEEGQRRRP HRGAS G DLDLKGAAP H            ALAPL QTA      +LMLASTEQDIMTAMMGLDPSLATSTAAQPAM LPKEEGPQAKGGKA SMGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH
Sbjct:   19 DCRVITEAFAHPPVPRTGASGRGTAGNSRGLAVVRTRAPAAFFRSGTDVSSSRPEGEAGEEGQRRRPAHRGASSGSDLDLKGAAPRHRSSRAAAAVA--ALAPLPQTAVTALAAILMLASTEQDIMTAMMGLDPSLATSTAAQPAMTLPKEEGPQAKGGKASSMGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH 234
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BLAST of mRNA_Ecto-sp8_S_contig1062.976.1 vs. uniprot
Match: D8LDN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN5_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 4.790e-60
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 2 
Query:  350 MLASTEQDIMTAMMGLDPSLATSTAAQPAMALPKEEGPQAKGGKAPSMGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH 655
            MLASTEQDIMTAMMGLDPSLATSTAAQPAM LPKEEGPQAKGGKAPSMGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH
Sbjct:    1 MLASTEQDIMTAMMGLDPSLATSTAAQPAMTLPKEEGPQAKGGKAPSMGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1062.976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L9T3_9PHAE5.370e-11283.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDN5_ECTSI4.790e-6099.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1062contigEcto-sp8_S_contig1062:626..3043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size860
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_001340.1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143159.662784-UTR-Ecto-sp8_S_contig1062:625..7641681143159.662784-UTR-Ecto-sp8_S_contig1062:625..764Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1062 626..764 +
1681143159.6907797-UTR-Ecto-sp8_S_contig1062:2841..30431681143159.6907797-UTR-Ecto-sp8_S_contig1062:2841..3043Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1062 2842..3043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143159.6715033-CDS-Ecto-sp8_S_contig1062:764..8401681143159.6715033-CDS-Ecto-sp8_S_contig1062:764..840Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1062 765..840 +
1681143159.6828952-CDS-Ecto-sp8_S_contig1062:2398..28411681143159.6828952-CDS-Ecto-sp8_S_contig1062:2398..2841Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1062 2399..2841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1062.976.1prot_Ecto-sp8_S_contig1062.976.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1062 765..2841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1062.976.1

>prot_Ecto-sp8_S_contig1062.976.1 ID=prot_Ecto-sp8_S_contig1062.976.1|Name=mRNA_Ecto-sp8_S_contig1062.976.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=173bp
MAVSSSRPEGGAGEEGQRRRPMHRGASGGGDLDLKGAAPPHRSSRAAAAA
AAAALAPLRQTAATALAAVLMLASTEQDIMTAMMGLDPSLATSTAAQPAM
ALPKEEGPQAKGGKAPSMGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQ
DSDLAMMLGKKMKTPDADPLTH*
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mRNA from alignment at Ecto-sp8_S_contig1062:626..3043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1062.976.1 ID=mRNA_Ecto-sp8_S_contig1062.976.1|Name=mRNA_Ecto-sp8_S_contig1062.976.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2418bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1062:626..3043+ (Ectocarpus species8 EcLAC_412)
AGACTGCCGCGTCGTCACAGAGGCGTTCGCACACCCACCTGTTCCGCGAA
CGAGAGCTTCGGGACGAGTTACTGCTGGAAATAACCGCGGCCTGGCAGTT
ATCCGGAGACGCGCACCGGCGGGTTTCTTCCGCTCCGGTATGGCGGTCTC
ATCGTCCCGCCCCGAGGGGGGAGCTGGGGAGGAGGGGCAACGGAGGCGGC
CGATGCATCGAGGTGGTAAGGTTCTGGGCACGTTTTGCCATGCCCCGTCG
TCGTCGCGGGGTTGATTATTCTCTGGTTGGTCTCTGGTCTGGTTCGCCAT
TACGACATTGGCTTTACTTTTGCCAATATTTCTGTAGTCTTGTCAAGCGC
ATTACAGCAGCGACGGGACAAAAGCAGGGCAGTTAGCTTTTCACCCTATC
GAGGACGGCGGCACAAACGTCTCTGCCGGGATTGCCGATAACCTTCGCCA
ACCAACCGCCTAAACCCACGAGCAACACATCCATGATTTGCGCCACCACC
ACTTCCTCAAATTCATCGTTGGAAGCCCCTTACTCACAACAATATCATTC
CCGGTATCGGGCAAACCAGCTGCTGGTGTAGGCCTGTGCTCCTTAGGTGA
TCACCGAAAATCACCGAATTTTGAAAACTTCACCGAAAAGTGAGGAATTT
GAATCACCGAAAAAATAGTGGCCGATCACCGAAAACGGGGGACGCCTCAC
AGAATTTCACCGTTTTTTTTAGGGGGCTCCGTGTATACAGGCCGTACCCC
CTAAATCCTATCAGATACCCCCAAGCACAGCAGCACAGCGTTGAATCGTT
GCGGAGGGCATCTATCGGTCTTCTGTCCTTGATGAGCTGATGATCAGATA
CATGCGTATAAGAACACCAGAGTTCATTTTAACGTTTTAACGTGGAGTAC
TTCCTACGATCCTTGAAGACATCGCCGAAAATCGCCGAAGAACGTTTTCG
GCAGCTTCCCAGTACTACACTTAAAAATTATCACCGAAAAGCACCGAAAT
ATATATATTTTGGCCCTCACCTTTTTTTTATTTTGTCGCCGATTTTCACC
GAAAAACATTTCAGTGCACCTAGAATAATCACCGATTTTTATTTTGGTAA
TCGGAAAAAATCACCGAAAAAAAAAAAAAAAGTCACCTAAGGAGCACAGG
CCTATGCTGGTGTCAGTCAATCCTAGTGGTACGGTCGGCACGACACCGGC
GAAAAGGAAGCCACTCACGTGCTGATCGTCTACAGCTTGGTATTCATTGG
TGCACCCCCCGCAATAACCTACCATCACCGCGATGGTTGCGCCCACGAAG
CGCAACCAGGACGTTGACAAACCATCTCCTGAATATTGTACATGTCGCGG
AGGAAATGTTTTCCGGGTCACAGCGGTTCGAGCACCCCCGGACGAAAAAT
TCGACCCTCGCTGCCAGCGCGTGTGTGAGACGGCGGCGACAGCCTTCGTA
ATTTGTGGATGTTGAGGTGTCCGGCTGTACTGTGTGCGAGTGTGTGTGTT
TGTGTGGTTTTGTTTGGCAGGCGCGCGGACGGAGATGGTGCTACAACCCT
CGGAAGTTTACCAGGAATATGCCAGGGGATAACCTGTGCACTAGCATTAC
ATGTACAACCAGATGATTAGCGTGGTACAGCAGCGGACGAATGTTCAACA
CAGAAGTTGGTGGGAATTTGGTTCGGGGAGCCGGAGGTTTTCAGGTCAAC
GACAAAACTCACGTATATGTCTTGCGCTTTCCGTTTGCTTACACGCGCGC
CCTCCGCCCTTCACTTTGTCCAGCCAGCGGCGGCGGCGATCTCGACCTTA
AGGGGGCCGCCCCACCGCACCGATCGTCTCGAGCAGCAGCAGCAGCAGCA
GCAGCAGCGTTGGCGCCGTTACGGCAAACAGCGGCAACAGCGCTGGCCGC
GGTCTTGATGCTCGCTTCCACCGAACAGGATATCATGACCGCCATGATGG
GGCTCGATCCCTCCCTGGCGACGTCCACCGCAGCGCAACCCGCCATGGCC
TTGCCCAAAGAGGAGGGTCCACAGGCAAAGGGTGGAAAGGCGCCGTCGAT
GGGTTCGATAGATGTACAGGGTCAGGGGGACGCTCTCGGGGAGATCGCCG
GGGGCCCCGGCGGCGGCTTCAAGAACGGGCGGCTTATGGTGGACCAGGAT
TCGGACCTGGCCATGATGCTGGGCAAGAAGATGAAGACACCGGACGCCGA
CCCGTTGACGCACTGATGGTGTTTTGTCTTGCTTTCTGTGTGGAGAGCCT
GGGTGATGTGTCTTGATTTTGGTGTGGAAGAGCCTGTGGCCAAACCCGGG
CGATTTTGACGGAGTACGCGGCTGGGTTTGTCTGCCCCTTGCACGTTGTT
GGTACTTCGTCGTCTCCGTTGGGCATCGTGCCTTTGATTTTGCGTCTGCA
TCACGACCTGATCTTTTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1062:626..3043+

>mRNA_Ecto-sp8_S_contig1062.976.1 ID=mRNA_Ecto-sp8_S_contig1062.976.1|Name=mRNA_Ecto-sp8_S_contig1062.976.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1062:626..3043+ (Ectocarpus species8 EcLAC_412)
ATGGCGGTCTCATCGTCCCGCCCCGAGGGGGGAGCTGGGGAGGAGGGGCA
ACGGAGGCGGCCGATGCATCGAGGTGCCAGCGGCGGCGGCGATCTCGACC
TTAAGGGGGCCGCCCCACCGCACCGATCGTCTCGAGCAGCAGCAGCAGCA
GCAGCAGCAGCGTTGGCGCCGTTACGGCAAACAGCGGCAACAGCGCTGGC
CGCGGTCTTGATGCTCGCTTCCACCGAACAGGATATCATGACCGCCATGA
TGGGGCTCGATCCCTCCCTGGCGACGTCCACCGCAGCGCAACCCGCCATG
GCCTTGCCCAAAGAGGAGGGTCCACAGGCAAAGGGTGGAAAGGCGCCGTC
GATGGGTTCGATAGATGTACAGGGTCAGGGGGACGCTCTCGGGGAGATCG
CCGGGGGCCCCGGCGGCGGCTTCAAGAACGGGCGGCTTATGGTGGACCAG
GATTCGGACCTGGCCATGATGCTGGGCAAGAAGATGAAGACACCGGACGC
CGACCCGTTGACGCACTGA
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