mRNA_Ecto-sp8_S_contig10610.964.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10610.964.1
Unique NamemRNA_Ecto-sp8_S_contig10610.964.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Match: D8LT21_ECTSI (Polyketide_cyc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT21_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 6.650e-59
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1
Query:    1 YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKYKADFAAGR 276
            YFPSKSS+TWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKYKADFAAGR
Sbjct:  166 YFPSKSSMTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKYKADFAAGR 257          
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Match: A0A835Z7Q3_9STRA (Polyketide_cyc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 7.820e-31
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQ--ADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKYKADFAAG 273
            YF S SSLTWTLDY ++STLDDSVG+W+V   P + KQ   +WSRVYYS  LR+P W+PGIV+ +L KKA+ EA  W+KRE+E K+  D  +G
Sbjct:  137 YFKSLSSLTWTLDYARRSTLDDSVGYWYVEPCPDKSKQDVQEWSRVYYSCMLRVPKWVPGIVVNFLEKKAVSEANMWLKREAEAKFAKDKVSG 229          
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Match: A0A7S2E2U9_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E2U9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.640e-26
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESE-----EKYKADFAAG 273
            YFPS +SLTWTLDYTKKS  DDS G+W++  HP  DK  DW+RVYYSV++ +  W+P  V+ +++ KA+ +AT WVK+ SE     E+ K   AAG
Sbjct:   19 YFPSLNSLTWTLDYTKKSDFDDSCGYWYIVPHP--DKPEDWTRVYYSVEVAMFDWVPKFVVDFMSSKALTDATGWVKKFSELEWEKEEVKIKAAAG 112          
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Match: A0A6U4DG12_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4DG12_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.050e-24
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKYKAD 261
            Y+P+ SSLTWTLDY+KKS  DDSVG+W+V  HP +     WSRVYYS+ + +  W+P  V+ +++ KA+ +AT WVK+ SEEK+K+D
Sbjct:  174 YYPTLSSLTWTLDYSKKSDFDDSVGYWYVVPHPDR---LGWSRVYYSIAVSMFDWVPKTVVNFMSTKALTDATGWVKKFSEEKWKSD 257          
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Match: A0A7S2R0C2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0C2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.910e-23
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKY 252
            Y+PS +SLTWTLDYTKKS  DDS G+W++  HP  DK   W+RVYYSV++ +  WIP   + +++ KA+ +AT WVK+ SE +Y
Sbjct:  155 YYPSLNSLTWTLDYTKKSDFDDSCGYWYIIPHP--DKPQSWTRVYYSVEVSMFDWIPKFALDFISAKALVDATAWVKKFSELEY 236          
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Match: A0A7S1GPF2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GPF2_CYCTE)

HSP 1 Score: 97.1 bits (240), Expect = 5.250e-23
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKY 252
            Y P  +SLTWTLDY+KKS  DDS G+W+V  HP  D   +W+RVYYSV++ +  W+P  V+ +L+ KA+ +AT WVK+ SE +Y
Sbjct:   17 YEPKLNSLTWTLDYSKKSDFDDSCGYWYVIPHP--DNPTEWTRVYYSVEVSMFDWVPKFVVNFLSTKALTDATAWVKKFSELEY 98          
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Match: A0A4D9CYH6_9STRA (Polyketide_cyc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYH6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.950e-23
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKYKADFAAG 273
            Y PS  +LTWTLDY ++S L+D+ G+W V     + K  DWSRV+YSV LRIP+W+P +V+  LN +A+  AT WVK +SE  Y+    +G
Sbjct:  184 YRPSIRTLTWTLDYDRQSDLEDTAGYWSVVPLDKEGKVGDWSRVFYSVDLRIPAWVPQLVVNILNTQALTTATAWVKTQSERAYQTSALSG 274          
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Match: A0A7S2A9L4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9L4_TRICV)

HSP 1 Score: 94.0 bits (232), Expect = 8.880e-23
Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKYKAD 261
            Y+PS +SLTWTLDY K+S  DDS G+W+V  HP  D     +RVYYSV++ +  W+P  V+ +++ KA+ +AT+WVK+ SE +++ D
Sbjct:   25 YYPSLNSLTWTLDYAKRSDFDDSCGYWYVVPHP--DDPEGRTRVYYSVEVSMFDWVPKFVVDFMSSKALTDATSWVKKHSEMRWEKD 109          
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Match: A0A7S2SSE8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSE8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.380e-22
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKY 252
            Y P K SLTWTLDY ++S  DD VG W+VA HPS+    DWS+VYYS  L +  W+PG+V+  L   A++ A TWVK+ SE +Y
Sbjct:  146 YVPLKKSLTWTLDYERESDFDDVVGHWYVAPHPSRP---DWSQVYYSADLALKGWVPGVVMNILTNSALKSAVTWVKKFSEAEY 226          
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Match: A0A7S4NBB6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBB6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.220e-20
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQLRIPSWIPGIVIGYLNKKAIREATTWVKRESEEKYKAD 261
            ++PS  SLTWTLDYTKKS LDDS G+W+V  HP    +   +RVYYSVQ+ +  W P  V+ +++ +A+ +AT WVK+ SE ++  D
Sbjct:  163 HYPSLRSLTWTLDYTKKSDLDDSCGYWYVIPHPDDPDRR--TRVYYSVQVSMFDWAPKFVVDFMSSRALTDATGWVKKYSELEWAKD 247          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10610.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT21_ECTSI6.650e-5998.91Polyketide_cyc domain-containing protein n=2 Tax=E... [more]
A0A835Z7Q3_9STRA7.820e-3158.06Polyketide_cyc domain-containing protein n=1 Tax=T... [more]
A0A7S2E2U9_9STRA4.640e-2652.08Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
A0A6U4DG12_9STRA1.050e-2452.87Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2R0C2_9STRA4.910e-2352.38Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1GPF2_CYCTE5.250e-2351.19Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A4D9CYH6_9STRA7.950e-2348.35Polyketide_cyc domain-containing protein n=2 Tax=M... [more]
A0A7S2A9L4_TRICV8.880e-2347.13Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2SSE8_9STRA1.380e-2252.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4NBB6_9STRA7.220e-2048.28Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10610contigEcto-sp8_S_contig10610:4867..6621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score194.1
Seed ortholog evalue2.8e-47
Seed eggNOG ortholog2880.D8LT21
Model size276
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2C4R1@1,2S3Y7@2759
Cds size276
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143159.1685643-CDS-Ecto-sp8_S_contig10610:4866..49291681143159.1685643-CDS-Ecto-sp8_S_contig10610:4866..4929Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10610 4867..4929 -
1681143159.1771953-CDS-Ecto-sp8_S_contig10610:5473..56251681143159.1771953-CDS-Ecto-sp8_S_contig10610:5473..5625Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10610 5474..5625 -
1681143159.1841435-CDS-Ecto-sp8_S_contig10610:6560..66211681143159.1841435-CDS-Ecto-sp8_S_contig10610:6560..6621Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10610 6561..6621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10610.964.1prot_Ecto-sp8_S_contig10610.964.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10610 4867..6621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10610.964.1

>prot_Ecto-sp8_S_contig10610.964.1 ID=prot_Ecto-sp8_S_contig10610.964.1|Name=mRNA_Ecto-sp8_S_contig10610.964.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=92bp
YFPSKSSLTWTLDYTKKSTLDDSVGFWHVATHPSQDKQADWSRVYYSVQL
RIPSWIPGIVIGYLNKKAIREATTWVKRESEEKYKADFAAGR
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mRNA from alignment at Ecto-sp8_S_contig10610:4867..6621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10610.964.1 ID=mRNA_Ecto-sp8_S_contig10610.964.1|Name=mRNA_Ecto-sp8_S_contig10610.964.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1755bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10610:4867..6621- (Ectocarpus species8 EcLAC_412)
TACTTCCCCTCCAAGAGTTCCTTGACGTGGACGCTCGACTACACCAAGAA GAGCACCCTCGGTGGGTGAATGCGGAGAGAGAGTGCTCCTGATACTGTAT ATGGGGGTGAAATTTGAAATTACTGGAACATTCCCGTCGTGCCTTTTTTC ATTTTTTGTTGTTGTGGCCTCCACTGCGAGCACGCTTCTCTCCAAGCACG TGTACGGCAAACGAGAGACTCTCGGTGTTCTCCCACGCGATCGTTGTTGT TCAGCGTATTTGCTGTTCGGGTGATTTGTGGGTGCCGTACGCGTGGCCGT ACGTCCCCGTGATGTTCCAAAGGGGGGACGGCTCGATCCAGGTTTCCAGC GCGAAATGGCGTTTTTTTTTTCTCGCAGGAGAGGAGGTGAATTTCCTCGA TTTTCGCACGTTGCTGCTACCCCTGCTGCAGCAGCAGTAGCATGCGGCAC ATCTCCTCAGACCGCACCAAGCCGCGTGATATAGTAGGTGCTCCGATGGT CTCCCAGGAAGAAATTAACTATTGTATGTATGTAGCACACCAGGTGGTAT GCAAAATGTGTGCTCGTGCTAAAGAGCATTCTTCCACATCGTCGTTGATC TTTGGGCCCCCCCGAAAACGGGTACTAGACCCGTTCGTCGCCCCTCCCTC GTGACCGCCGACGGCATGTGCGTGATCCATGGTGAGAACCCCCCTCTCTC GCAAATGATGTGTCTGGTTTGGCACAGCAAACGCAAGAGTGGTGATGACA GGGTTTTTATCTGGTTCAATCCTTGTGAAATGAACCTTGGGGCGGCGAAA AACGAAAAACCATAACTCCGTCCCGACGTTGTAGGGATGCGAGGTCTGTG GCCTACCTACCCACCACGGCATGCTTTCACATGAGTACACCCCTTTCGCA CACCCAGTCCCACGCCTTCTCCGTCTCCGCCAAGCTTGACACTCTGTCCC CCCCCCCCCGGTCCTTGTGTTGCACCGCGTGTGACTGAATAACCAGATGA TTCCGTGGGTTTCTGGCACGTGGCGACTCACCCGTCCCAAGACAAGCAGG CCGACTGGTCCCGCGTGTACTACTCGGTCCAGCTCAGGATCCCGAGCTGG ATCCCCGGCATCGTCATCGGTTACCTGAACAAGAAGGCCATTCGGGAGGT GGGGTTGAGGAGAGCGCCGCTTGCTCTTGCCCCCCGCACGTGTATGCGTG TGTGTGGAGTGAACAAGAGTTTTGCGCTTGTTTTGTTCTCGTTGTGTGCC TCGTGTGTGGGCTGCGTTTGCTGCATGCTAATTGGTTTGCCCCGCTGTGC ATGTGTGTGTGTGTACAGTGAGGAATTTTGTGTGAATTTTTTATCATCTT GTGTGTCTCGCGTTTGCTCTGCTTTTACTTTTACGGCGTGTTTTTTTTGT GTTTTTTTGCGTGAGCGCGCGCGTAGCATACCTGTGCCTTTCCGTGGAGG AACAATTCATTTCGGGGTCCGATCACGACCCTGACCGTAGTACTCCATCA ATCATGCCCAAAATCATCAAACCCCAACGCTCTTTGGGAACGATCCACAG ATAACCGTCCAGGGCGTGCCTCGAATTTCTTTTCTCTCTCTCTCTCCTCC TCATCCAGAACCGTCCTCTCATACATACTTCTAATAAACTACTTATTTTT TTCCGGCATGGCATGTTCGTGCTTGCGCGAAAATGAAAACAGGCCACAAC CTGGGTCAAACGCGAGAGCGAGGAGAAGTACAAGGCGGATTTCGCGGCCG GAAGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10610:4867..6621-

>mRNA_Ecto-sp8_S_contig10610.964.1 ID=mRNA_Ecto-sp8_S_contig10610.964.1|Name=mRNA_Ecto-sp8_S_contig10610.964.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10610:4867..6621- (Ectocarpus species8 EcLAC_412)
TACTTCCCCTCCAAGAGTTCCTTGACGTGGACGCTCGACTACACCAAGAA
GAGCACCCTCGATGATTCCGTGGGTTTCTGGCACGTGGCGACTCACCCGT
CCCAAGACAAGCAGGCCGACTGGTCCCGCGTGTACTACTCGGTCCAGCTC
AGGATCCCGAGCTGGATCCCCGGCATCGTCATCGGTTACCTGAACAAGAA
GGCCATTCGGGAGGCCACAACCTGGGTCAAACGCGAGAGCGAGGAGAAGT
ACAAGGCGGATTTCGCGGCCGGAAGA
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