mRNA_Ecto-sp8_S_contig1061.961.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1061.961.1
Unique NamemRNA_Ecto-sp8_S_contig1061.961.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Match: A0A6H5J7F4_9PHAE (GPI mannosyltransferase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7F4_9PHAE)

HSP 1 Score: 1222 bits (3161), Expect = 0.000e+0
Identity = 646/716 (90.22%), Postives = 660/716 (92.18%), Query Frame = 1
Query:  187 MSPIQHQPGSSTRSGATTTVISVAVASRVATVALMVLGNAVLPTHDAGGVHKFRPRTFPVPSAGA----GTGGVFSAFTRWDSAWFLSIADSGYPYPTVGGDDGDGIDCRGTTRAWGGEEYEWGEYGQLGEDRTEGGERDESAPSAQKQPRCRPDIPLEEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAWWGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADNGGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSXXXXXX--RAVATAAGHNRNFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVLVQAYAYRKFCLAGARLAEEGGNGDALNRGGADGGSPSAAELPRLTMEQLHPWCARRVPSVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYGIACFFSAQLRSFRASAAEEGCDSSRGSGGNGXGGSNTPGPHRWARGMCFVRRWVLKLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAAVCMNVQVVTRFLAAACPPLHWWTASLLVRDGKGRGGAGEEAAGGAPAALGTCLRWYLGAYFVVGAVLHANFLPWT 2316
            MSPIQH PGSSTRSGATTTVISVAVASR ATVALMVLGNAVLPTHDAGGVHKFRPRTFPVPSAGA    G GGVFSAFTRWDSAWFLSIADSGYPYPTVG DD DGIDCRGTTRAWGGEEYEW EYGQ GEDRTEGG+ DE+APSAQ QPRCRPDIP+EEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAA TGDSLLARRGALAFC+TPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRR AR TTSSGG DRQGTEG H DASGGS+NAWWGC AVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMA DVGLFAD GGNQDENSAGVDAAFPLA RS SAAANT +RE++TRAGS  XXXXX  RAV T+AGH  NFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVL QAYAY KFCLAG RLAEEGGNGDALN GGADG SP AA+LP LTMEQLHPWCA RVPSVYAHVQSTYWNVGAFRYYQWKQ+PNFLLAAPALILTA+GIACFFSAQ RS RA+ AEEGCDSSRGSGGN X  SNTPGPH WARGMCF RRWVLKLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAA+CMNVQV TRFLAAACPPLHWWTASLLVRDGKGR       AGGAPAALGTCLRWYLGAYFVVGAVLHANFLPWT
Sbjct:    1 MSPIQHHPGSSTRSGATTTVISVAVASRAATVALMVLGNAVLPTHDAGGVHKFRPRTFPVPSAGAXXXXGPGGVFSAFTRWDSAWFLSIADSGYPYPTVGSDDDDGIDCRGTTRAWGGEEYEWREYGQFGEDRTEGGDTDEAAPSAQTQPRCRPDIPMEEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAVTGDSLLARRGALAFCVTPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRRTARRTTSSGGGDRQGTEGLHHDASGGSTNAWWGCEAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMARDVGLFADGGGNQDENSAGVDAAFPLAARSSSAAANTHNREVRTRAGSRSXXXXXXDRAVTTSAGHTPNFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVLFQAYAYHKFCLAGTRLAEEGGNGDALNSGGADGSSPLAAKLPSLTMEQLHPWCAWRVPSVYAHVQSTYWNVGAFRYYQWKQIPNFLLAAPALILTAHGIACFFSAQ-RSLRATTAEEGCDSSRGSGGNXXXXSNTPGPHPWARGMCFARRWVLKLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAALCMNVQVATRFLAAACPPLHWWTASLLVRDGKGRDXXXXXXAGGAPAALGTCLRWYLGAYFVVGAVLHANFLPWT 715          
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Match: A0A835YPR3_9STRA (GPI mannosyltransferase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPR3_9STRA)

HSP 1 Score: 232 bits (591), Expect = 5.290e-63
Identity = 218/696 (31.32%), Postives = 281/696 (40.37%), Query Frame = 1
Query:  244 VISVAVASRVATVALMVLGNAVLPTHDAGGVHKFRPRTFPVPSAGAGTGGVFSAFTRWDSAWFLSIADSGYPYPTVGGDDGDGIDCRGTTRAWGGEEYEWGEYGQLGEDRTEGGERDESAPSAQKQPRCRPDIPLEEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESLYAMLSFAGLLVLFS-EGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAWWGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADNGGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSXXXXXXRAVATAAGHNRNFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVLVQAYAYRKFCLAGARLAEEGGNGDALNRGGADGGSPSAAELPRLTMEQLHPWCARRVPSVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYGIACFFSAQLRSFRASAAEEGCDSSRGSGGNGXGGSNTPGPHRWARGMCFVRRWVLKLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAAVCMNVQVVTRFLAAACPPLHWWTASLLVRDGKGRGGAGEEAAGGAPAALGTCLRWYLGA----YFVVGAVLHANFLPWT 2316
            V+  AV SR+ TV LM+  +  LP H A GV +F         AG     + +AF +WD+AW L +AD GYP P                         W    ++G  RT          SA K P    D   EEQ HAFFPLY W+VR  AA ++     +   L+   +LV +AV +SN  FVASA  L+ L  +  GD   A  GALA+C  PAS FFST YTES +A L+FAG  VL S + H  + R    +                               W++A+LL  AT  RSNG++ A +  L KL W+  +                       L TRS      T+S                                  G V  LR  A  + TALQ  L+++PY+  Q YAY+KFC A +  A                              Q+HPWC R VPS+YA VQ  YW VG  RYY  + +PNFLLAAP + ++A+G    +    R+   +  E                      H     M    +          G  ++  P AS      A A    W      A + MNVQV TRFLAAACPPLHW    LL         AG +         G   +W+ G     +FV G V HA FLPWT
Sbjct:   71 VVLWAVISRILTVGLMIGSSLYLPEHRATGVLRF---------AGVDKHPIAAAFVKWDAAWLLQVADKGYPPPP------------------------W----RMG--RT----------SALKVPHSDVDF-FEEQVHAFFPLYSWIVRHLAACVQ-----SWFGLDWGFALVASAVALSNIAFVASAAALFHLSCSVLGDRRKALWGALAYCFNPASAFFSTTYTESAFAFLTFAGFAVLLSPKAHCTSLRKVPLA-------------------------------WLSAMLLCAATATRSNGVSAALIFGLAKLHWLVDEA----------------------LKTRS------TRS----------------------------------GVVVALRFIAGALATALQIALIVSPYIAFQGYAYQKFCAAASTKAL-----------------------------QMHPWCLRAVPSLYAWVQERYWGVGLLRYYTVRNIPNFLLAAPVVAVSAWGAVELWQ---RAAWTAVIET--------------------VHMLLAAMGVRSKPSFAAQQRAHGAGRMLPPRAS----YAATAFALHWGALLCVAVLAMNVQVTTRFLAAACPPLHWRIGELL---------AGTK---------GRLCKWFTGVWVVLFFVAGPVAHALFLPWT 544          
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Match: A0A1V4JCI8_PATFA (GPI mannosyltransferase 2 n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JCI8_PATFA)

HSP 1 Score: 125 bits (314), Expect = 1.560e-26
Identity = 151/589 (25.64%), Postives = 221/589 (37.52%), Query Frame = 1
Query:  646 LEEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAWWGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADNGGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSXXXXXXRAVATAAGHNRNFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVLVQAYAYRKFCLAGA-RLAEEGGNGDALNRG----GADGGSPSAAELPRLTMEQLHPWCARRVPSVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYGIACFFSAQLRSFRASAAEEGCDSSRGSGGNGXGGSNTPGPHRWARGMCFVRRWVLKLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAAVCMNVQVVTRFLAAACPPLHWWTASLLVR----------DGKGRGGAGEE--AAGGAPAA---------------LGTCLRWYLGAYFVVGAVLHANFLPWT 2316
            L E   AFFPLYP  +R   A   A L     +L   S L+L+A L+++   V +A  LY+LG A       A   A  FC++PA+VF + AY+ES++  L+F G +     G R                                        W  A+L SLAT AR+NG+  AG L+    + +A  + L                                                                 R G  + W +L +    +A+    +  P+V+ Q YAY  FC+ G  R   E     AL++G    GA G  P              PWC++R P+VY ++Q  YWNVG  RY++ +Q+PNFLLA P  +L+++    + SA  R                                     C       +  +          PA   +     A L+     F FF   CM+VQV+TRFL ++ P L+W++A LL            DG+     GE   + G   AA               L  C+  +  +Y+++G +LH NFLPWT
Sbjct:   85 LYEHNCAFFPLYPLSLR---AGAEAALWPLRRLLRLRSRLLLSAALLNSLFAVLAAAALYKLGCAVLRCRRAAFLAAALFCVSPANVFLAAAYSESMFCCLAF-GAMWRLERGQR----------------------------------------WRGALLFSLATGARANGVVNAGFLLYSCAKRLALQLQL-----------------------------------------------------------------RSGSLLLWRQLLST-ASSAIACAGICLPFVVFQYYAYMMFCVPGLERAVPEPLLQLALHKGYQLAGAHGAHP--------------PWCSQRFPAVYPYIQDVYWNVGFLRYFELRQIPNFLLALPVTLLSSWAAWTYLSANPR------------------------------------RCLTLGLERRNGEENKASAGFCGPAVFVYVVHATALLL-----FGFF---CMHVQVLTRFLGSSSPILYWFSAHLLQEHEPVLWSEGTDGQPASPGGERPGSRGDGAAANPVLRLLSHWSLLTPLSKCVLGFFLSYWLLGLLLHCNFLPWT 505          
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Match: UPI00140293E4 (GPI mannosyltransferase 2 isoform X1 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI00140293E4)

HSP 1 Score: 122 bits (305), Expect = 2.150e-25
Identity = 163/593 (27.49%), Postives = 229/593 (38.62%), Query Frame = 1
Query:  646 LEEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAWWGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADNGGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSXXXXXXRAVATAAGHNRNFRRRDGGAVAW-LRLAACLVVTALQALLVIAPYVLVQAYAYRKFCLAGA-----------RLAEEGGNGDALNRGGADGGSPSAAELPRLTMEQLHPWCARRVPSVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYGIACFFSAQLRSFRASAAEEGCDSSRGSGGNGXGGSNTPGPHRWARGMCFVRRWVL--KLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAAVC-MNVQVVTRFLAAACPPLHWWTASLLVRDGKGRGGAGEEAAGGAP---------------------AALGTCLRWYLGAYFVVGAVLHANFLPWT 2316
            + EQ  AF PL+P ++R  A  L   L      L   S L+LA+ L++   FV SAV+LY+L  A   D  LA   +L FC+ PASVF S AY+ES++ +LSF+G+L      H   AR  TS                                     L +L+T ARSNGI  AG L   +L+                            L  R           E+K                        F  +D   + W L L + L+VT + +++++ P+ L Q Y Y  FC +             +LA E G        G D   PS              WC  R P +Y+++Q TYWNVG  RYYQ KQ+PNFLLA P + L  +    +  +                                   W    C +   +L  KL     GD K   P++        A ++   A  AF   VC M++QV+TRFLA++ P L+W++A LL +D +    A + A    P                     +    C+  Y   Y+ +G  LH NFLPWT
Sbjct:   78 IYEQNFAFLPLFPVILRALAETLLGPLQPW---LGLHSRLLLASTLLNTVIFVLSAVVLYQLSVAVLRDRRLAALSSLLFCLNPASVFMSAAYSESIFMLLSFSGML------HLEKARPLTS-----------------------------------CALFALSTAARSNGIINAGFLFHSQLKQCI-------------------------LYLRP----------ELK------------------------FTGKDWHKLCWHLILRSALLVT-VGSVVIVLPFALFQYYGYLTFCRSAVNPALTIPPHLLQLAREKG----YRLPGKDSAVPS--------------WCHHRYPIIYSYIQDTYWNVGFMRYYQLKQLPNFLLAFPIIALGIWAAKQYVLSD---------------------------------PW---YC-IHLGLLHKKLKGEREGDGK---PSSGFSSHRVFAYVVHATALLAF--GVCFMHIQVITRFLASSSPVLYWFSAHLL-QDKEPGHLAQDSATSSYPYTFSIIPRNPLTALLQDWRRCSLTARCVLGYFLLYWFLGLALHCNFLPWT 505          
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Match: A0A835A7C8_9POAL (GPI mannosyltransferase 2 n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835A7C8_9POAL)

HSP 1 Score: 121 bits (304), Expect = 2.650e-25
Identity = 148/576 (25.69%), Postives = 216/576 (37.50%), Query Frame = 1
Query:  652 EQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAWWGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADNGGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSXXXXXXRAVATAAGHNRNFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVLVQAYAYRKFCLAGARLAEEGGNGDALNRGGADGGSPSAAELPRLTMEQLHPWCARRVPSVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYGIACFFSAQLRSFRASAAEE---------GCDSSRGSGGNGXGGSNTPGPHRWARGMCFVRRW---VLKLADVFFGDPKLPHPAASPFERTGAAALMA---QWAFFAFFAAVCMNVQVVTRFLAAACPPLHWWTASLLVRDGKGRGGAGEEAAGGAPAALGTCLRW------YLGAYFVVGAVLHANFLPWT 2316
            EQ++AF PL P  +     +L A L+    VL   + LVL+ ++++N  FVASA   YRL      D   A R ++ FC  PASVF+S+ Y+ESLYA+ S  GL  LFS                                          NT VA ++L++++ ARSNG   AG    + L                                R+  AA N K                                        L +   L+  AL+++ +  P+   QAY Y   C+ G+                                E+L PWC  +VP +Y  +QS YW VG  RY+Q KQ+PNFLLA P L L  Y I  +     + F+ ++ +            +S + S         + GP   A G   V++      +     F D    +      +  G+  L+      AF  F A   M+VQV TRFL+A+ PP++W  A +L                       T  RW      Y  AY ++G++L +NF P+T
Sbjct:   85 EQSYAFLPLLPASIALLPRSLFAPLVP---VLGYGAVLVLSGLVLNNVAFVASAAYFYRLSVLILKDRKAAYRASVLFCFNPASVFYSSLYSESLYALFSLGGLFYLFS----------------------------------------GANT-VAVIMLAISSSARSNGALNAGYFCFQAL-------------------------------LRAYDAAVNKKRP--------------------------------------LLVVRTLIAAALRSIFIFLPFFAFQAYGYFNICVHGSS-------------------------------EKLRPWCKAKVPLLYGFIQSHYWGVGFLRYFQVKQLPNFLLATPTLSLAVYAIIHYTKILHQLFQTTSIQRQITTALEARSIESYKRSDDVTVSSELSAGPTNKAYGNSNVKQRKSVATETVSATFHDAMSANQNIKENQHEGSILLLPFVLHLAFMTFTAFFVMHVQVSTRFLSAS-PPIYWAAAHILASPNC------------------TSKRWGYLICAYFIAYILLGSLLFSNFYPFT 497          
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Match: A0A7K6BH61_UPUEP (GPI mannosyltransferase 2 (Fragment) n=1 Tax=Upupa epops TaxID=57439 RepID=A0A7K6BH61_UPUEP)

HSP 1 Score: 120 bits (302), Expect = 5.480e-25
Identity = 155/595 (26.05%), Postives = 233/595 (39.16%), Query Frame = 1
Query:  646 LEEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAWWGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADNGGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSXXXXXXRAVATAAGHNRNFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVLVQAYAYRKFCLAGARLAEEGGNGDALNRGGADGGSPSAAE-LPRLTMEQLH----------PWCARRVPSVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYGIACFFSAQLRSFRASAAEEGCDSSRGSGGNGXGGSNTPGPHRWARGMCFVRRWVLKLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAAVCMNVQVVTRFLAAACPPLHWWTASLLVR-------DG---------KGRGGAGEEAAGGAPAA-----------LGTCLRWYLGAYFVVGAVLHANFLPWT 2316
            L E   AFFPLYP  + WA A     L     +L   S L+L+AVL+++   + +A  LY+LG        +A   AL F ++PA+VF + AY+ES++A L+F                                         +A W      +W+ A+L SLA+  R+NG+  AG  +    + +A  + + + +G                           K +++ ++A S        AV   AG                               V  P+ L Q+YAY +FC AG                   G  P+  E L +L +++ +          PWC++R P VY+++Q TYWNVG  RY++ KQ+PNFLLA PA +L ++    +  A  R                              H    G+  VRR   K  D          PA   +    A  L+A    F FF   C++VQV+TRFL ++ P L+W++A LL         DG          G+ G+        P A           LG  +  +  +Y+++G VLH NFLPWT
Sbjct:   83 LYEHNCAFFPLYPLSL-WAVA--EGALWPLQWLLRLRSRLLLSAVLLNSLFSILAAAALYKLGCIVLRCHSVAFLAALLFALSPANVFMAAAYSESMFAALAF-----------------------------------------SAMWQLEKGQSWLGALLFSLASGVRANGLINAGFCLYSHSKRLALQLQVGSGSGRKLQ----------------------LKWKQLLSQASS--------AVVMCAG-------------------------------VFLPFTLFQSYAYIRFCTAGT------------------GPQPAVPEPLLQLALDKGYRLVATNGAKPPWCSQRFPMVYSYIQDTYWNVGFLRYFELKQIPNFLLALPATLLGSWAACTYLMANPR------------------------------HCLTLGL--VRR---KSEDESEARAGFCCPAVFVYV-VHATVLLA----FGFF---CIHVQVLTRFLGSSSPILYWFSAHLLHEHEPLLRSDGISTHTTAPLVGKSGSHGRGTSDNPIARLLTNWRLMTPLGKFVLGFFLSYWLLGLVLHCNFLPWT 511          
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Match: A0A401S8V5_CHIPU (GPI mannosyltransferase 2 n=3 Tax=Chiloscyllium TaxID=34767 RepID=A0A401S8V5_CHIPU)

HSP 1 Score: 120 bits (301), Expect = 6.830e-25
Identity = 154/589 (26.15%), Postives = 223/589 (37.86%), Query Frame = 1
Query:  646 LEEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAWWGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADNGGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSXXXXXXRAVATAAGHNRNFRRRDGGAVAWLRLAA-CLVVTALQALLVIAPYVLVQAYAYRKFCLAGARLAEEGGNGD---ALNRGGADGGSPSAAELPRLTMEQLHPWCARRVPSVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYG------IACFFSAQLRSFRASAAEEGCDSSRGSGGNGXGGSNTPGPHRWARGMCFVRRWVLKLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAAVCMNVQVVTRFLAAACPPLHWWTASLLVRDGKGRGGAGEEAA--------GGAP--------------AALGTCLRWYLGAYFVVGAVLHANFLPWT 2316
            + E   AF PL+P  +R  A  +   L      LN  S L+LAAVL++   F+ SAV+LY LG     D  LA   +L FC+TPA+VF S AY+ES++ +L+F G+L L                                     W   G +       L SL+   RSNGI  AG L+  +L+                            L  R                                  H      +D    +WL L    +V+ A   ++++ P+VL Q Y YR FC +    A +        A N+G      P     P +       WC R+ PS+Y+++Q  YWNVG  RYYQ++Q+PNFLLA P + L  +       +  ++  QL                                         RR + K  +    D K PH   S F        +        F    M++QV+TRFLA++ P L+W++A LL +   GR   G+++A        G  P              +    C+  Y   Y+++G  LH NFLPWT
Sbjct:   77 IYEHNFAFLPLFPVSLRVVAETV---LSPLRCFLNLHSRLLLAAVLLNAVIFILSAVVLYHLGGVVLRDRRLAFLSSLLFCLTPANVFMSAAYSESMFVLLTFGGMLNL----------------------------------EKGWLVTGCI-------LFSLSAAVRSNGIVNAGFLLYSQLKLCT-------------------------LYVR----------------------------------HKSTVMEKDLYK-SWLNLILRSVVLVAAGTMMIVLPFVLFQYYGYRTFCKSTMNPALDIPQPLLQLARNKGYH---VPDKESDPPI-------WCHRQYPSIYSYIQEAYWNVGFLRYYQFRQLPNFLLAFPVMALGVWAAWQYVIVDPWYCVQLG--------------------------------------LTRRKIRKKTEK---DSK-PH---SSFHTDQVFVYIVHATVLLVFGICFMHIQVLTRFLASSSPILYWFSAHLLQKVEPGR--LGQDSATSIYRNKFGIFPRNQLTTLLQDWNGCSLTARCILGYFVLYWLLGLSLHCNFLPWT 504          
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Match: A0A7K7EL55_9SYLV (GPI mannosyltransferase 2 (Fragment) n=1 Tax=Sylvia atricapilla TaxID=48155 RepID=A0A7K7EL55_9SYLV)

HSP 1 Score: 119 bits (299), Expect = 1.010e-24
Identity = 157/589 (26.66%), Postives = 228/589 (38.71%), Query Frame = 1
Query:  646 LEEQAHAFFPLYPWVVRWAAAALRAL--LLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAWWGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADNGGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSXXXXXXRAVATAAGHNRNFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVLVQAYAYRKFCLAGARLAEEGGNGDALNRGGADGGSPSAAELPRLTMEQLHPWCARRVPSVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYGIACFFSAQLRSFRASAAEEGCDSSRGSGGNGXGGSNTPGPHRWARGMCFVRRWVLKLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAAVCMNVQVVTRFLAAACPPLHWWTASLLVRD-------GKGRGGAGEEAAGGAPAALG-----------------------TCLRWYLGAYFVVGAVLHANFLPWT 2316
            L E   AF PL+P        +LRAL  LL   + L   + L+L+A L++      +A  L RLG A      LA   AL F ++PA VF + AY+ES++A L+F+ +  L  +GH                                         W+ A+L SLA+  R+NG+  AG  +  + R +A                                         ++ +AG               G  R  R      V W R+ +     AL    +  P+ L Q YAY +FC  GA LA +    +AL +   D G            +   PWC++R P VY+++Q TYWNVG  RY++ +Q+PNFLLA P  +L ++    + S   R       E      RG                             K  D F G      PAA  +     A L+     F FF   CM+VQV+TRFL  + P L+W+ A LL          G     +G+   G +P++ G                       + L ++LG Y+++G +LH NFLPWT
Sbjct:   58 LLEHNCAFLPLFP-------LSLRALCGLLPCPVPLQPRALLLLSAALLNALLSALAAAALLRLGRAVLRRPRLAFLAALLFSVSPAGVFMAAAYSESMFAALAFSAMWRL-EQGHG----------------------------------------WLGAMLFSLASGTRANGMLNAGFCLYPRARSLA-----------------------------------------LQLQAGP--------------GPRRQLR------VLWKRVFSLAFSAALMCAGIFLPFALFQYYAYVRFCGPGAALARD--IPEALLQLARDKGYRVVG-----VGQDKPPWCSQRFPLVYSYIQDTYWNVGFLRYFELRQIPNFLLALPVTLLGSWAAWTYVSTNPRHCLTLGLERRRSEERG-----------------------------KARDGFCG------PAAFVYVVHATALLV-----FGFF---CMHVQVLTRFLGCSSPILYWFAAHLLQEHEPLLRSTGTDHPTSGKPLLGKSPSSCGKGTSDNPVVRLLLNWRLLTPLSKSILGFFLG-YWLLGLILHCNFLPWT 486          
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Match: A0A7K9YB15_9GALL (GPI mannosyltransferase 2 (Fragment) n=3 Tax=Odontophoridae TaxID=224313 RepID=A0A7K9YB15_9GALL)

HSP 1 Score: 119 bits (299), Expect = 1.280e-24
Identity = 157/580 (27.07%), Postives = 224/580 (38.62%), Query Frame = 1
Query:  646 LEEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAWWGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADNGGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSXXXXXXRAVATAAGHNRNFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVLVQAYAYRKFCLAGARLAEEGGNGDALNRGGADGGS---PSAAELPRLTMEQLHPWCARRVPSVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYGIACFFSAQLRSFRASAAEEGCDSSRGSGGNGXGGSNTPGPHRWARGMCFVRRWVLKLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAAVCMNVQVVTRFLAAACPPLHWWTASLLVR-------DGKGRGGAGEEAAG--GAP-----------AALGTCLRWYLGAYFVVGAVLHANFLPWT 2316
            L E   AFFPLYP  +R  A      L     +L   S L+L+AVL+++   V +A  LY+LG A       A   AL FCI+PA+VF + AY+ES++ +L+F                                         +A W      +W++ +L SLAT  R+NG+  AG                                  F L +RS       KS  ++ + GS                  +  +R    VA   L  C  +          P+ L Q YAY +FC  G  LA      + L +   D G    P     P        PWC++R+P VY+++Q  YWNVG  RY++ +Q+PNFLLA P  +L ++    F  A  R                              H    G+   RR   K   V  G P+      + F     A  +    FF      CM+VQV+TRFL ++ P L+W++A LL R       +G  R  +G    G  G P             +  C+  Y  +Y+++G VLH N LPWT
Sbjct:   90 LYEHNCAFFPLYPLSLRAVADGA---LWPLQQLLRLRSRLLLSAVLLNSLFSVLAAAALYKLGCAVLRCHKTAFLAALLFCISPANVFMTAAYSESMFTVLTF-----------------------------------------SAMWHLEKGQSWLSVLLFSLATGVRANGLVNAG----------------------------------FFLYSRS-------KSFALQLQVGSGWV------------RKLSLLQRQLLGVASSVLLTCAGICL--------PFALFQYYAYVRFCGPGLELAVP----ELLQQLAVDKGYRLVPPNGVKP--------PWCSQRLPVVYSYIQDVYWNVGFLRYFELRQIPNFLLALPVTLLGSWATWTFTVANPR------------------------------HCLTLGL--ERR---KKEQV--GKPRFGFCCPAVFVYVVHATALLVLGFF------CMHVQVLTRFLGSSSPVLYWFSAHLLRRHEGWLWKEGADRQSSGSCGKGPTGHPLLRLLLNYRSMTPVAQCVLGYFVSYWLLGLVLHCNCLPWT 509          
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Match: A0A8C8R592_9SAUR (GPI mannosyltransferase 2 n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8R592_9SAUR)

HSP 1 Score: 118 bits (296), Expect = 2.780e-24
Identity = 158/592 (26.69%), Postives = 230/592 (38.85%), Query Frame = 1
Query:  646 LEEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLVSNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESLYAMLSFAGLLVLFSEGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAWWGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADNGGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSXXXXXXRAVATAAGHNRNFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVLVQAYAYRKFCLAGARLAEEGGNGDALNRGGADGGSPSAAELPRLTMEQLHP-WCARRVPSVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYGIACFFSAQLRSFRASAAEEGCDSSRGSGGNGXGGSNTPGPHRWARGMCFVRRWVLKLADVFFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAAVCMNVQVVTRFLAAACPPLHWWTASLLVRDGK---GRGGAGEEAAG-GAPAALGTCL------------------RW------------YLGAYFVVGAVLHANFLPWT 2316
            L E   AFFP+YP  VR  A      L     +L   S L+L AVL++    V +AV+LY LG    G   +A   AL FC+TPA+VF + AY+ES++A L F+ +L L                 E  Q                        +W + +L SLA   RSNG+  +G LV  + + +A  +              AGV +   L+                                                  W +L        L +  V+ P+ L Q YAY +FC   A  + E      L +   D G   A      T+  + P WC+   P +Y+++Q+ YWNVG  RY++ KQVPNFLLA P ++L ++    + +A  +         G   ++  G  G   SN P       G C  R +V  +                      A AL+A       F  +CM+VQV+TRFL ++ P L+W++A LL          G AG+ A        +G+CL                   W            Y  +Y+++G +LH NFLPWT
Sbjct:   59 LYEHNFAFFPVYPLCVRVVAEFT---LWPLQWLLCLRSRLLLLAVLLNALLLVLAAVVLYELGRMVLGCRKMAFLSALLFCLTPANVFMTAAYSESMFAFLVFSAMLQL-----------------EKGQ------------------------SWTSGLLFSLAAGVRSNGVINSGFLVYSQSKALAFQL-------------QAGVGSVMKLSH------------------------------------------------VWRQLLRLATSVVLMSAGVLFPFALFQFYAYLRFCEPDA--SPEHAVPRPLLQLAVDKGYRLA------TVNGVKPAWCSHWPPVIYSYIQAVYWNVGFLRYFETKQVPNFLLAVPVIVLGSWAAWVYLTANPQH----CLMLGLVRNKSEGRKGEN-SNKP-----VEGFCCSRVFVYMVH---------------------ATALLA-------FGILCMHVQVLTRFLGSSSPVLYWFSAHLLQEYEPLLWEEGTAGQTAPSLSEKPRIGSCLPGLFRKRISENLIMRLLLNWKISSPITKCILGYFLSYWLLGLILHCNFLPWT 499          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1061.961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7F4_9PHAE0.000e+090.22GPI mannosyltransferase 2 n=2 Tax=Ectocarpus TaxID... [more]
A0A835YPR3_9STRA5.290e-6331.32GPI mannosyltransferase 2 n=1 Tax=Tribonema minus ... [more]
A0A1V4JCI8_PATFA1.560e-2625.64GPI mannosyltransferase 2 n=1 Tax=Patagioenas fasc... [more]
UPI00140293E42.150e-2527.49GPI mannosyltransferase 2 isoform X1 n=2 Tax=Ambly... [more]
A0A835A7C8_9POAL2.650e-2525.69GPI mannosyltransferase 2 n=2 Tax=Digitaria exilis... [more]
A0A7K6BH61_UPUEP5.480e-2526.05GPI mannosyltransferase 2 (Fragment) n=1 Tax=Upupa... [more]
A0A401S8V5_CHIPU6.830e-2526.15GPI mannosyltransferase 2 n=3 Tax=Chiloscyllium Ta... [more]
A0A7K7EL55_9SYLV1.010e-2426.66GPI mannosyltransferase 2 (Fragment) n=1 Tax=Sylvi... [more]
A0A7K9YB15_9GALL1.280e-2427.07GPI mannosyltransferase 2 (Fragment) n=3 Tax=Odont... [more]
A0A8C8R592_9SAUR2.780e-2426.69GPI mannosyltransferase 2 n=1 Tax=Pelusios castane... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1061contigEcto-sp8_S_contig1061:865..3515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1304.3
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FMC4
Preferred namePIGV
Model size2651
KEGG koko:K06699,ko:K07542
KEGG ReactionR05921
KEGG Pathwayko00563,ko01100,ko03050,map00563,map01100,map03050
KEGG ModuleM00065
Hectar predicted targeting categoryother localisation
GOsGO:0000030,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0003674,GO:0003824,GO:0004376,GO:0004584,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007029,GO:0007275,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016254,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019637,GO:0022008,GO:0030154,GO:0030176,GO:0030182,GO:0031224,GO:0031227,GO:0031501,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0036211,GO:0042051,GO:0042052,GO:0042157,GO:0042158,GO:0042175,GO:0042461,GO:0042462,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044091,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045048,GO:0045052,GO:0045184,GO:0045313,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0046530,GO:0048468,GO:0048513,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070085,GO:0070727,GO:0071704,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0090407,GO:0090596,GO:0097502,GO:0098827,GO:0120097,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509,GO:1990234
Exons1
EggNOG free text desc.dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity
EggNOG OGsCOG5542@1,KOG2647@2759
Ec32 ortholog descriptionGPI mannosyltransferase, family GT76
Ec32 orthologEc-17_003500.1
Cds size2133
COG Functional cat.G
CAZyGT76
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03051
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143158.9990666-UTR-Ecto-sp8_S_contig1061:864..10501681143158.9990666-UTR-Ecto-sp8_S_contig1061:864..1050Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1061 865..1050 +
1681143159.0204062-UTR-Ecto-sp8_S_contig1061:3183..35151681143159.0204062-UTR-Ecto-sp8_S_contig1061:3183..3515Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1061 3184..3515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143159.0131884-CDS-Ecto-sp8_S_contig1061:1050..31831681143159.0131884-CDS-Ecto-sp8_S_contig1061:1050..3183Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1061 1051..3183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1061.961.1prot_Ecto-sp8_S_contig1061.961.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1061 1051..3183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1061.961.1

>prot_Ecto-sp8_S_contig1061.961.1 ID=prot_Ecto-sp8_S_contig1061.961.1|Name=mRNA_Ecto-sp8_S_contig1061.961.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=711bp
MSPIQHQPGSSTRSGATTTVISVAVASRVATVALMVLGNAVLPTHDAGGV
HKFRPRTFPVPSAGAGTGGVFSAFTRWDSAWFLSIADSGYPYPTVGGDDG
DGIDCRGTTRAWGGEEYEWGEYGQLGEDRTEGGERDESAPSAQKQPRCRP
DIPLEEQAHAFFPLYPWVVRWAAAALRALLLTTGLVLNKASSLVLAAVLV
SNSCFVASAVLLYRLGAAATGDSLLARRGALAFCITPASVFFSTAYTESL
YAMLSFAGLLVLFSEGHRRAARGTTSSGGEDRQGTEGFHRDASGGSSNAW
WGCGAVNTWVAAVLLSLATLARSNGIAGAGVLVLEKLRWMASDVGLFADN
GGNQDENSAGVDAAFPLATRSPSAAANTKSREMKTRAGSSGGGGGDRAVA
TAAGHNRNFRRRDGGAVAWLRLAACLVVTALQALLVIAPYVLVQAYAYRK
FCLAGARLAEEGGNGDALNRGGADGGSPSAAELPRLTMEQLHPWCARRVP
SVYAHVQSTYWNVGAFRYYQWKQVPNFLLAAPALILTAYGIACFFSAQLR
SFRASAAEEGCDSSRGSGGNGGGGSNTPGPHRWARGMCFVRRWVLKLADV
FFGDPKLPHPAASPFERTGAAALMAQWAFFAFFAAVCMNVQVVTRFLAAA
CPPLHWWTASLLVRDGKGRGGAGEEAAGGAPAALGTCLRWYLGAYFVVGA
VLHANFLPWT*
back to top

mRNA from alignment at Ecto-sp8_S_contig1061:865..3515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1061.961.1 ID=mRNA_Ecto-sp8_S_contig1061.961.1|Name=mRNA_Ecto-sp8_S_contig1061.961.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2651bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1061:865..3515+ (Ectocarpus species8 EcLAC_412)
CTCGCAAAAATCAAGGCTCACAAAGAGGCGGAGGCTGTGCTGCGGGTGCC GCTCCTGGTGGAGTATAAATCTCTCTCCTCTTCATTCTACAGCAGTAGTC GCTTACCGCATAGCCACCGCTCGTTCGTTACTCCGCACGCGTCAAATCTT GGCGATAAGGTCGTTTCCCCGCTGGCCTGTACAACCATGTCGCCAATCCA GCACCAACCTGGCAGCAGCACCAGATCCGGCGCGACCACGACGGTGATTT CTGTCGCTGTGGCATCCAGGGTGGCCACCGTGGCCCTGATGGTCCTCGGG AACGCTGTCCTCCCCACGCACGACGCCGGTGGCGTGCACAAGTTCCGACC AAGAACGTTCCCCGTGCCGTCTGCCGGCGCCGGCACCGGCGGAGTGTTTT CGGCCTTCACGCGGTGGGACTCGGCGTGGTTCCTGAGCATTGCCGACAGC GGCTACCCTTACCCTACGGTGGGCGGTGATGATGGTGATGGGATTGATTG CAGGGGAACGACCAGAGCTTGGGGCGGAGAGGAGTACGAGTGGGGAGAGT ATGGACAGCTTGGAGAAGATCGCACGGAAGGTGGGGAGAGGGACGAGTCA GCGCCGTCAGCACAAAAGCAACCCCGTTGCCGACCCGACATCCCGCTGGA AGAACAAGCCCATGCGTTCTTCCCACTCTACCCGTGGGTCGTGCGGTGGG CCGCGGCGGCCCTCCGTGCCCTCTTGCTCACAACCGGTCTCGTCTTGAAC AAGGCCAGCAGCCTCGTCCTGGCCGCTGTACTCGTCAGCAACTCGTGCTT TGTGGCGTCCGCGGTGCTGCTGTACAGGCTGGGAGCGGCCGCAACGGGCG ACTCTCTCCTGGCCCGCCGAGGCGCGCTCGCCTTCTGCATCACCCCCGCC AGCGTCTTCTTCAGCACGGCATACACGGAGAGCCTCTACGCCATGCTGTC GTTCGCTGGCCTGTTGGTTCTCTTCTCGGAAGGGCATCGAAGAGCGGCGA GAGGAACCACGTCAAGCGGCGGCGAGGATAGACAGGGGACGGAGGGGTTC CACCGTGACGCCAGTGGGGGTAGCAGCAACGCCTGGTGGGGGTGCGGAGC CGTGAACACGTGGGTCGCCGCGGTGTTGCTGTCCTTGGCCACTCTTGCCC GGTCGAACGGAATCGCCGGCGCCGGAGTGCTGGTTCTGGAAAAGCTGCGC TGGATGGCGAGCGACGTCGGGCTCTTCGCCGACAACGGCGGCAACCAAGA CGAGAATAGCGCCGGTGTTGACGCCGCGTTTCCCCTGGCAACGCGGTCGC CGTCCGCTGCAGCTAACACCAAGAGCCGGGAGATGAAGACCCGGGCCGGG AGTAGCGGCGGCGGCGGCGGCGACCGTGCCGTCGCCACCGCCGCCGGCCA CAACCGGAACTTTCGCAGGCGAGACGGTGGCGCCGTGGCCTGGCTGAGGC TGGCCGCCTGCCTGGTCGTTACCGCGCTGCAGGCGCTCCTCGTCATAGCG CCGTACGTTCTCGTCCAGGCTTACGCGTACCGCAAGTTCTGCCTCGCAGG GGCGAGGCTGGCGGAGGAAGGTGGCAACGGCGACGCCCTCAACAGGGGGG GTGCCGACGGTGGTAGCCCATCGGCAGCAGAGCTTCCACGCCTGACCATG GAGCAGCTTCACCCCTGGTGTGCCCGGAGAGTGCCGAGCGTCTACGCGCA CGTCCAGTCGACGTACTGGAACGTAGGAGCCTTCCGGTACTACCAATGGA AACAGGTCCCTAATTTTTTGCTAGCGGCCCCGGCGCTGATCCTGACGGCC TACGGAATCGCCTGTTTCTTCTCCGCCCAGCTGCGGTCGTTTCGCGCGTC TGCGGCAGAGGAAGGGTGTGATTCTTCCCGTGGCAGCGGCGGCAACGGGG GTGGGGGCAGCAACACGCCGGGACCGCATCGATGGGCTAGGGGCATGTGC TTTGTTCGGAGATGGGTACTGAAGCTGGCGGATGTCTTTTTCGGCGACCC GAAGCTGCCGCACCCTGCGGCGTCGCCGTTCGAGCGCACCGGGGCGGCGG CGCTGATGGCGCAGTGGGCCTTCTTCGCCTTCTTCGCCGCCGTGTGCATG AACGTCCAGGTCGTCACTCGCTTCCTAGCCGCCGCTTGCCCCCCGCTCCA CTGGTGGACTGCTAGCCTTCTGGTCAGGGACGGGAAAGGGCGCGGTGGAG CCGGAGAGGAGGCGGCGGGTGGGGCACCGGCGGCGCTTGGAACGTGCTTA CGGTGGTACCTCGGAGCGTACTTCGTCGTCGGCGCTGTGCTGCACGCCAA CTTTTTGCCGTGGACATGAGGCGGCCATTTGGTGGGGAGAGCTACGACCC AGTCTGGGCGAGAGCCTCGCCACGCCCCCTCGTTGTACAACGAAACCCAG AAAGTTGTGTAGTATCCATGGCCAGTCAAAGCCCAGATAGTTGTATATCG GTTTCATTGTGGAAGTGTCTTTAACGCGGGGAAAATGAATGTTTTTTGAG TACCGTAACGTCTGTTCTCTTTTAAGAATGTTACGAAATCGCGTCTTTGT CGGTCGGGAAACTGTTACCCGTAGAACGCTTCTTCCTTAACAACCAAGAA GTGTGGAGACCCCTTCATAAGGGTACACTCTCCCCAACGTCTGTCGAGGA C
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1061:865..3515+

>mRNA_Ecto-sp8_S_contig1061.961.1 ID=mRNA_Ecto-sp8_S_contig1061.961.1|Name=mRNA_Ecto-sp8_S_contig1061.961.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2133bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1061:865..3515+ (Ectocarpus species8 EcLAC_412)
ATGTCGCCAATCCAGCACCAACCTGGCAGCAGCACCAGATCCGGCGCGAC
CACGACGGTGATTTCTGTCGCTGTGGCATCCAGGGTGGCCACCGTGGCCC
TGATGGTCCTCGGGAACGCTGTCCTCCCCACGCACGACGCCGGTGGCGTG
CACAAGTTCCGACCAAGAACGTTCCCCGTGCCGTCTGCCGGCGCCGGCAC
CGGCGGAGTGTTTTCGGCCTTCACGCGGTGGGACTCGGCGTGGTTCCTGA
GCATTGCCGACAGCGGCTACCCTTACCCTACGGTGGGCGGTGATGATGGT
GATGGGATTGATTGCAGGGGAACGACCAGAGCTTGGGGCGGAGAGGAGTA
CGAGTGGGGAGAGTATGGACAGCTTGGAGAAGATCGCACGGAAGGTGGGG
AGAGGGACGAGTCAGCGCCGTCAGCACAAAAGCAACCCCGTTGCCGACCC
GACATCCCGCTGGAAGAACAAGCCCATGCGTTCTTCCCACTCTACCCGTG
GGTCGTGCGGTGGGCCGCGGCGGCCCTCCGTGCCCTCTTGCTCACAACCG
GTCTCGTCTTGAACAAGGCCAGCAGCCTCGTCCTGGCCGCTGTACTCGTC
AGCAACTCGTGCTTTGTGGCGTCCGCGGTGCTGCTGTACAGGCTGGGAGC
GGCCGCAACGGGCGACTCTCTCCTGGCCCGCCGAGGCGCGCTCGCCTTCT
GCATCACCCCCGCCAGCGTCTTCTTCAGCACGGCATACACGGAGAGCCTC
TACGCCATGCTGTCGTTCGCTGGCCTGTTGGTTCTCTTCTCGGAAGGGCA
TCGAAGAGCGGCGAGAGGAACCACGTCAAGCGGCGGCGAGGATAGACAGG
GGACGGAGGGGTTCCACCGTGACGCCAGTGGGGGTAGCAGCAACGCCTGG
TGGGGGTGCGGAGCCGTGAACACGTGGGTCGCCGCGGTGTTGCTGTCCTT
GGCCACTCTTGCCCGGTCGAACGGAATCGCCGGCGCCGGAGTGCTGGTTC
TGGAAAAGCTGCGCTGGATGGCGAGCGACGTCGGGCTCTTCGCCGACAAC
GGCGGCAACCAAGACGAGAATAGCGCCGGTGTTGACGCCGCGTTTCCCCT
GGCAACGCGGTCGCCGTCCGCTGCAGCTAACACCAAGAGCCGGGAGATGA
AGACCCGGGCCGGGAGTAGCGGCGGCGGCGGCGGCGACCGTGCCGTCGCC
ACCGCCGCCGGCCACAACCGGAACTTTCGCAGGCGAGACGGTGGCGCCGT
GGCCTGGCTGAGGCTGGCCGCCTGCCTGGTCGTTACCGCGCTGCAGGCGC
TCCTCGTCATAGCGCCGTACGTTCTCGTCCAGGCTTACGCGTACCGCAAG
TTCTGCCTCGCAGGGGCGAGGCTGGCGGAGGAAGGTGGCAACGGCGACGC
CCTCAACAGGGGGGGTGCCGACGGTGGTAGCCCATCGGCAGCAGAGCTTC
CACGCCTGACCATGGAGCAGCTTCACCCCTGGTGTGCCCGGAGAGTGCCG
AGCGTCTACGCGCACGTCCAGTCGACGTACTGGAACGTAGGAGCCTTCCG
GTACTACCAATGGAAACAGGTCCCTAATTTTTTGCTAGCGGCCCCGGCGC
TGATCCTGACGGCCTACGGAATCGCCTGTTTCTTCTCCGCCCAGCTGCGG
TCGTTTCGCGCGTCTGCGGCAGAGGAAGGGTGTGATTCTTCCCGTGGCAG
CGGCGGCAACGGGGGTGGGGGCAGCAACACGCCGGGACCGCATCGATGGG
CTAGGGGCATGTGCTTTGTTCGGAGATGGGTACTGAAGCTGGCGGATGTC
TTTTTCGGCGACCCGAAGCTGCCGCACCCTGCGGCGTCGCCGTTCGAGCG
CACCGGGGCGGCGGCGCTGATGGCGCAGTGGGCCTTCTTCGCCTTCTTCG
CCGCCGTGTGCATGAACGTCCAGGTCGTCACTCGCTTCCTAGCCGCCGCT
TGCCCCCCGCTCCACTGGTGGACTGCTAGCCTTCTGGTCAGGGACGGGAA
AGGGCGCGGTGGAGCCGGAGAGGAGGCGGCGGGTGGGGCACCGGCGGCGC
TTGGAACGTGCTTACGGTGGTACCTCGGAGCGTACTTCGTCGTCGGCGCT
GTGCTGCACGCCAACTTTTTGCCGTGGACATGA
back to top