mRNA_Ecto-sp8_S_contig10609.960.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10609.960.1
Unique NamemRNA_Ecto-sp8_S_contig10609.960.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: D7FKQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.150e-25
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 2
Query:  467 MNEPDGERRRFDWRIQSAETSLSSMGNMGASNALVVIGPRRPCQGHPAARARAGG 631
            MNEP+GERRRFD RIQ AETSLSSMGNMGASNALV+I PRRPCQGHPAARARAGG
Sbjct:    1 MNEPEGERRRFDCRIQRAETSLSSMGNMGASNALVIIRPRRPCQGHPAARARAGG 55          
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 8.090e-12
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 3
Query:  594 AKGIRQRVQELEAE-AWQFCWRKPL--SERRNGTRRAIRTWQTFVTAATFGSDEEE-ASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
            AK  R R++ELEA+ +      + L  ++R+  T+   RT+QT +TAA F  D+ + A ++SA+RR   +  G  E +FN   +RAK+  +D +P  A+KRGVYWFWPR K+
Sbjct:   21 AKETRVRLRELEAKVSTAVSLERALEQAQRQRRTKEGSRTFQTILTAAAFPVDDVDWAPSVSARRRA--AALGVREQAFNFAAERAKKMLSDRQPTEAIKRGVYWFWPRAKQ 130          
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5LEY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.530e-11
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 3
Query:  594 AKGIRQRVQELE-----AEAWQFCWRKPLSERRNGTRRAIRTWQTFVTAATF-GSDEEEASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
            AK  R+R++ELE     A + +    +   +RR  T+   RT QT +TAA   G   +E  ++SA RR      G  EH+FN  V+RAK   + L P  A+KRGVYWFWPR K+
Sbjct:  181 AKDARKRLRELEDKVSTAVSLERAIEQARKQRR--TKEGSRTLQTILTAAAIPGDGVDEVPSLSAARRAK--ALGVREHAFNSAVERAKNLLSGLHPTEAIKRGVYWFWPRAKQ 290          
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5JA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA27_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.240e-11
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  684 TRRAIRTWQTFVTAATFGSDE-EEASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
            T+   RT QT + AA F  D  +E  ++SA RR      G  +H+FN  V+RAK S +DL P  A+KRGVYWFWPR K+
Sbjct:   92 TKEGSRTLQTILNAAAFPVDGVDEVPSLSAARRAK--ALGIRQHAFNSAVERAKNSLSDLDPTEAIKRGVYWFWPRAKQ 168          
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.980e-10
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  594 AKGIRQRVQELEAEAWQFCWRKPLSE---RRNGTRRAIRTWQTFVTAATFGSDEEEASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
            AK    R++ELEA+A      +   E   ++  T     T QT +TAA F  D + A ++SA+RR   +  G  + +F   V+RAK+  +DL P  A+KRGVYWFWPR KR
Sbjct:  159 AKDTLVRLRELEAKASTAVSLERAIEQAPKQPRTTEGRHTLQTILTAAAFRVDVDGAPSISARRRA--AVLGVQKRAFTFAVERAKKLLSDLNPTEAIKRGVYWFWPRAKR 267          
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5K847_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K847_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.240e-9
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  594 AKGIRQRVQELE-----AEAWQFCWRKPLSERRNGTRRAIRTWQTFVTAATFGSDE-EEASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
            AK  R+R++ LE     A + +    +   +RR  T    RT QT +TAA F  D  +E  ++SA RR      G  + +FN  V+RAK   +DL P  A+KRGVYWFWPR K+
Sbjct:  342 AKDTRKRLRGLEDKVSTAVSLERAIEQAQKQRR--TNEGRRTLQTILTAAAFPVDGVDEVPSLSAARRAK--ALGVRQRAFNSAVERAKNLLSDLHPTEAIKRGVYWFWPRAKQ 451          
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5JQ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ62_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.990e-8
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 3
Query:  594 AKGIRQRVQELEAEAWQFCWRKPLSERRNGTRRAIRTWQTFVTAATFGSDEEEASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
            AK  R R++ELEA                  +   RT+Q  +TAA F  D+ + +   + RR   +  G  E +FN   + AK+  +DL+P  A+KRGVYWFWPR K+
Sbjct:   21 AKETRVRLRELEA------------------KEGSRTFQPILTAAAFPVDDVDGAPSVSARRTA-AALGVREQAFNFAAEPAKKLLSDLQPTEAIKRGVYWFWPRAKQ 109          
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5KHT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.960e-7
Identity = 71/233 (30.47%), Postives = 98/233 (42.06%), Query Frame = 2
Query:   14 SIHERGPSWAGGSCGQARHLSLFMYLLLTAQHTACIIPGSTLHSGGFNATRGEVLLLVTKLVDKRKP------QLVFQNNASVR---REL*KSGIV*ARKPLSWLAAP*RTAVRLH*QSGRPVVAXXXXXXXXXXXAQTWLADPFIAALQGGGRTWSGLAMNEPDGERRRFDWRIQSAETSLSSMGNMGASNALVVI---GPRRPCQGHPAARARAGG*GLAILLEKTIERAK 676
            S  E GP+ A    G+  H+      LL    T  I      H    + +RGEVLL+ T LVDK+ P      Q VF  N   R   + L  +  +   K   W  A        H +SG                A   +AD F+AAL+G GRT SG  ++EP       DWR QS ET ++SM +MG   AL  +   G +   +     R        A+ LE+ +E+A+
Sbjct:    2 SAAEAGPAAAVSKPGKCEHM------LLLGNQTHVIQ-----HEWRPDKSRGEVLLITT-LVDKKSPNRSSNKQQVFVANTEERVASKALEMAHRLLKNKRERWEKA--------HGRSG----GSRSSGGGARRNADREVADLFMAALRGCGRTRSGSTISEPAEPTAPADWRQQSTETFIASMDSMGYDKALHHLEGTGSKFAKETRVRLRELEAKVSTAVSLERALEQAQ 210          
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.030e-6
Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 3
Query:  771 KRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
            K +P     G  EH FN  V+RAK   +DL P  A+KRGVYWFWPR K+
Sbjct:   16 KIQPAEPALGVREHDFNFAVERAKNLLSDLYPTEAIKRGVYWFWPRAKQ 64          
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5JAR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.450e-5
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 3
Query:  795 FGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
             G  E +FN   +RAK+  +DL+P  A+KRGVYWFWPR K+
Sbjct:   51 LGVREQAFNFATERAKKLLSDLQPTEAIKRGVYWFWPRAKQ 91          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FKQ5_ECTSI2.150e-2590.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L293_9PHAE8.090e-1241.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LEY9_9PHAE6.530e-1141.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA27_9PHAE7.240e-1148.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE3.980e-1040.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K847_9PHAE1.240e-940.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ62_9PHAE1.990e-836.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHT7_9PHAE3.960e-730.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2L6_9PHAE3.030e-653.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR5_9PHAE4.450e-553.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10609contigEcto-sp8_S_contig10609:4798..6217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size942
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001750.1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143158.933938-UTR-Ecto-sp8_S_contig10609:4797..51051681143158.933938-UTR-Ecto-sp8_S_contig10609:4797..5105Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10609 4798..5105 -
1681143158.9625318-UTR-Ecto-sp8_S_contig10609:5717..60751681143158.9625318-UTR-Ecto-sp8_S_contig10609:5717..6075Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10609 5718..6075 -
1681143158.9716532-UTR-Ecto-sp8_S_contig10609:6109..62171681143158.9716532-UTR-Ecto-sp8_S_contig10609:6109..6217Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10609 6110..6217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143158.9440253-CDS-Ecto-sp8_S_contig10609:5105..52501681143158.9440253-CDS-Ecto-sp8_S_contig10609:5105..5250Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10609 5106..5250 -
1681143158.9531124-CDS-Ecto-sp8_S_contig10609:5694..57171681143158.9531124-CDS-Ecto-sp8_S_contig10609:5694..5717Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10609 5695..5717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10609.960.1prot_Ecto-sp8_S_contig10609.960.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10609 5106..5717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10609.960.1

>prot_Ecto-sp8_S_contig10609.960.1 ID=prot_Ecto-sp8_S_contig10609.960.1|Name=mRNA_Ecto-sp8_S_contig10609.960.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=56bp
MNEPDGERRRFDWRIQSAETSLSSMGNMGASNALVVIGPRRPCQGHPAAR
ARAGG*
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mRNA from alignment at Ecto-sp8_S_contig10609:4798..6217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10609.960.1 ID=mRNA_Ecto-sp8_S_contig10609.960.1|Name=mRNA_Ecto-sp8_S_contig10609.960.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10609:4798..6217- (Ectocarpus species8 EcLAC_412)
GCTGAGGAGAGGCTCCATCCATGAGCGTGGCCCAAGTTGGGCCGGTGGCA GCTGTGGTCAAGCCAGGCATTTGTCTCTCTTCATGTACTTACTACTTACT GCACAGCAGACACGTGTTACAAGCAAGTACACATGTTTCGCATACTGCTT GTATCATACCTGGTAGCACTTTGCACTCTGGAGGATTCAACGCTACCCGC GGTGAAGTGCTGTTGTTGGTCACGAAGCTTGTAGACAAGAGGAAACCACA ACTAGTTTTTCAAAACAATGCGAGCGTTCGTCGCGAACTCTGAAAATCTG GCATTGTTTGAGCTCGAAAGCCGTTGAGTTGGCTCGCAGCGCCCTGAAGA ACAGCTGTGAGATTGCATTGACAGAGTGGCAGACCGGTTGTTGCAGCGGC AGCAGCGTCACCAGGAGGAGGAGGAGGAGCGCAGACGTGGTTAGCGGATC CATTTATTGCAGCTTTGCAGGGTGGCGGAAGGACCTGGTCTGGGTTGGCA ATGAATGAGCCGGACGGTGAGAGGTGAGATATTATTGTCTGAAGAAGTAA CAGTTTACAGTTCGCACGTCACGTGTACGCGCATTTGGTACATCATTGCC CAACTGTATCGCTGAACACGTCAACTTTTTGTGCCTCTTGTTGTCACAGT GTAGAACTCGAGCGGTACCACCGCTGCATGCAAAATACTGAAATGTTTAC GCCTTTATAATTTGCTGTTTGCTGCCCTGGAACATGGAGCTCTCCGCGCC CCCAGCATATGCGTGCAAGCTCACACTACTTTTGATTTGAGGGTAACCGG AAACGCACATGCTGCACTATTTGGTGAAGAGTGGTCATATGTCTACCATC ACCAATACCCTTTTTCCATTGAAAAAAATATTTTGGTGAAGTCGAAGTAG GTGCTGTGTGCGCCGCCCCTCGCTATGGACACTTCGCTCTTACCTTCCCC GTACGTGTTGCGCACAGACGGAGGTTTGACTGGAGGATCCAGAGCGCGGA AACTTCCCTCTCTTCCATGGGCAACATGGGGGCATCAAATGCGCTGGTTG TCATAGGACCCCGAAGGCCGTGCCAAGGGCATCCGGCAGCGCGTGCAAGA GCTGGAGGCTGAGGCTTGGCAATTTTGCTGGAGAAAACCATTGAGCGAGC GAAGGAATGGAACGAGGCGGGCGATTCGAACGTGGCAAACTTTCGTCACT GCTGCGACCTTCGGCAGCGACGAGGAGGAGGCCTCAACGATGTCGGCCAA ACGAAGGCCGCCGCGATCGGGGTTCGGGAACTGGGAGCACAGTTTCAACC ACGTTGTGGACCGTGCCAAGCGCTCGACAGCCGACCTCCGTCCAGTCGTG GCGATGAAACGCGGTGTCTACTGGTTCTGGCCCCGGGGTAAGAGGAGGGG CATGCCGACATGGTACCAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10609:4798..6217-

>mRNA_Ecto-sp8_S_contig10609.960.1 ID=mRNA_Ecto-sp8_S_contig10609.960.1|Name=mRNA_Ecto-sp8_S_contig10609.960.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10609:4798..6217- (Ectocarpus species8 EcLAC_412)
ATGAATGAGCCGGACGGTGAGAGACGGAGGTTTGACTGGAGGATCCAGAG
CGCGGAAACTTCCCTCTCTTCCATGGGCAACATGGGGGCATCAAATGCGC
TGGTTGTCATAGGACCCCGAAGGCCGTGCCAAGGGCATCCGGCAGCGCGT
GCAAGAGCTGGAGGCTGA
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