mRNA_Ecto-sp8_S_contig10609.960.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: D7FKQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ5_ECTSI) HSP 1 Score: 105 bits (262), Expect = 2.150e-25 Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 2
Query: 467 MNEPDGERRRFDWRIQSAETSLSSMGNMGASNALVVIGPRRPCQGHPAARARAGG 631
MNEP+GERRRFD RIQ AETSLSSMGNMGASNALV+I PRRPCQGHPAARARAGG
Sbjct: 1 MNEPEGERRRFDCRIQRAETSLSSMGNMGASNALVIIRPRRPCQGHPAARARAGG 55
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5L293_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L293_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 8.090e-12 Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 3
Query: 594 AKGIRQRVQELEAE-AWQFCWRKPL--SERRNGTRRAIRTWQTFVTAATFGSDEEE-ASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
AK R R++ELEA+ + + L ++R+ T+ RT+QT +TAA F D+ + A ++SA+RR + G E +FN +RAK+ +D +P A+KRGVYWFWPR K+
Sbjct: 21 AKETRVRLRELEAKVSTAVSLERALEQAQRQRRTKEGSRTFQTILTAAAFPVDDVDWAPSVSARRRA--AALGVREQAFNFAAERAKKMLSDRQPTEAIKRGVYWFWPRAKQ 130
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5LEY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 6.530e-11 Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 3
Query: 594 AKGIRQRVQELE-----AEAWQFCWRKPLSERRNGTRRAIRTWQTFVTAATF-GSDEEEASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
AK R+R++ELE A + + + +RR T+ RT QT +TAA G +E ++SA RR G EH+FN V+RAK + L P A+KRGVYWFWPR K+
Sbjct: 181 AKDARKRLRELEDKVSTAVSLERAIEQARKQRR--TKEGSRTLQTILTAAAIPGDGVDEVPSLSAARRAK--ALGVREHAFNSAVERAKNLLSGLHPTEAIKRGVYWFWPRAKQ 290
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5JA27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA27_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 7.240e-11 Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 3
Query: 684 TRRAIRTWQTFVTAATFGSDE-EEASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
T+ RT QT + AA F D +E ++SA RR G +H+FN V+RAK S +DL P A+KRGVYWFWPR K+
Sbjct: 92 TKEGSRTLQTILNAAAFPVDGVDEVPSLSAARRAK--ALGIRQHAFNSAVERAKNSLSDLDPTEAIKRGVYWFWPRAKQ 168
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.980e-10 Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 3
Query: 594 AKGIRQRVQELEAEAWQFCWRKPLSE---RRNGTRRAIRTWQTFVTAATFGSDEEEASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
AK R++ELEA+A + E ++ T T QT +TAA F D + A ++SA+RR + G + +F V+RAK+ +DL P A+KRGVYWFWPR KR
Sbjct: 159 AKDTLVRLRELEAKASTAVSLERAIEQAPKQPRTTEGRHTLQTILTAAAFRVDVDGAPSISARRRA--AVLGVQKRAFTFAVERAKKLLSDLNPTEAIKRGVYWFWPRAKR 267
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5K847_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K847_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 1.240e-9 Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 3
Query: 594 AKGIRQRVQELE-----AEAWQFCWRKPLSERRNGTRRAIRTWQTFVTAATFGSDE-EEASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
AK R+R++ LE A + + + +RR T RT QT +TAA F D +E ++SA RR G + +FN V+RAK +DL P A+KRGVYWFWPR K+
Sbjct: 342 AKDTRKRLRGLEDKVSTAVSLERAIEQAQKQRR--TNEGRRTLQTILTAAAFPVDGVDEVPSLSAARRAK--ALGVRQRAFNSAVERAKNLLSDLHPTEAIKRGVYWFWPRAKQ 451
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5JQ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ62_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.990e-8 Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 3
Query: 594 AKGIRQRVQELEAEAWQFCWRKPLSERRNGTRRAIRTWQTFVTAATFGSDEEEASTMSAKRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
AK R R++ELEA + RT+Q +TAA F D+ + + + RR + G E +FN + AK+ +DL+P A+KRGVYWFWPR K+
Sbjct: 21 AKETRVRLRELEA------------------KEGSRTFQPILTAAAFPVDDVDGAPSVSARRTA-AALGVREQAFNFAAEPAKKLLSDLQPTEAIKRGVYWFWPRAKQ 109
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5KHT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT7_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 3.960e-7 Identity = 71/233 (30.47%), Postives = 98/233 (42.06%), Query Frame = 2
Query: 14 SIHERGPSWAGGSCGQARHLSLFMYLLLTAQHTACIIPGSTLHSGGFNATRGEVLLLVTKLVDKRKP------QLVFQNNASVR---REL*KSGIV*ARKPLSWLAAP*RTAVRLH*QSGRPVVAXXXXXXXXXXXAQTWLADPFIAALQGGGRTWSGLAMNEPDGERRRFDWRIQSAETSLSSMGNMGASNALVVI---GPRRPCQGHPAARARAGG*GLAILLEKTIERAK 676
S E GP+ A G+ H+ LL T I H + +RGEVLL+ T LVDK+ P Q VF N R + L + + K W A H +SG A +AD F+AAL+G GRT SG ++EP DWR QS ET ++SM +MG AL + G + + R A+ LE+ +E+A+
Sbjct: 2 SAAEAGPAAAVSKPGKCEHM------LLLGNQTHVIQ-----HEWRPDKSRGEVLLITT-LVDKKSPNRSSNKQQVFVANTEERVASKALEMAHRLLKNKRERWEKA--------HGRSG----GSRSSGGGARRNADREVADLFMAALRGCGRTRSGSTISEPAEPTAPADWRQQSTETFIASMDSMGYDKALHHLEGTGSKFAKETRVRLRELEAKVSTAVSLERALEQAQ 210
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5L2L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L6_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 3.030e-6 Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 3
Query: 771 KRRPPRSGFGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
K +P G EH FN V+RAK +DL P A+KRGVYWFWPR K+
Sbjct: 16 KIQPAEPALGVREHDFNFAVERAKNLLSDLYPTEAIKRGVYWFWPRAKQ 64
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Match: A0A6H5JAR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR5_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 4.450e-5 Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 3
Query: 795 FGNWEHSFNHVVDRAKRSTADLRPVVAMKRGVYWFWPRGKR 917
G E +FN +RAK+ +DL+P A+KRGVYWFWPR K+
Sbjct: 51 LGVREQAFNFATERAKKLLSDLQPTEAIKRGVYWFWPRAKQ 91 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10609.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10609.960.1 >prot_Ecto-sp8_S_contig10609.960.1 ID=prot_Ecto-sp8_S_contig10609.960.1|Name=mRNA_Ecto-sp8_S_contig10609.960.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=56bp MNEPDGERRRFDWRIQSAETSLSSMGNMGASNALVVIGPRRPCQGHPAARback to top mRNA from alignment at Ecto-sp8_S_contig10609:4798..6217- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10609.960.1 ID=mRNA_Ecto-sp8_S_contig10609.960.1|Name=mRNA_Ecto-sp8_S_contig10609.960.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10609:4798..6217- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10609:4798..6217- >mRNA_Ecto-sp8_S_contig10609.960.1 ID=mRNA_Ecto-sp8_S_contig10609.960.1|Name=mRNA_Ecto-sp8_S_contig10609.960.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10609:4798..6217- (Ectocarpus species8 EcLAC_412)back to top |