mRNA_Ecto-sp8_S_contig106081.959.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106081.959.1
Unique NamemRNA_Ecto-sp8_S_contig106081.959.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Match: UPI00040BAD09 (glycosyltransferase family 2 protein n=3 Tax=Leisingera TaxID=191028 RepID=UPI00040BAD09)

HSP 1 Score: 313 bits (803), Expect = 4.270e-101
Identity = 143/169 (84.62%), Postives = 156/169 (92.31%), Query Frame = 1
Query:    1 DSYEGLHQKLFYAYMVLDLLTQPEMVIKIDDNILLKDGERFGACLDRVAQKGAAYAGRRVGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGYGYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDISQGYGILAMPGLMTKERQRV 507
            D+YEGLHQKLFYAYM+LDLLT P +V+KIDDNIL++D  RF ACLDRVA KGAA AGRRVGTRRHQDQWHGWHL KCADP++E RGYQYPLPRDYAAGGYGYVL REGLAACGYMYLAMKEF AMP VGLEDACVGHAIYAQRLEL+DISQG+G+LAMPGL TKER+R+
Sbjct:  479 DTYEGLHQKLFYAYMLLDLLTAPALVVKIDDNILMQDAARFAACLDRVADKGAALAGRRVGTRRHQDQWHGWHLGKCADPVMETRGYQYPLPRDYAAGGYGYVLGREGLAACGYMYLAMKEFLAMPAVGLEDACVGHAIYAQRLELMDISQGHGLLAMPGLTTKERRRL 647          
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Match: UPI0019EEBFFC (Glycosyltransferase n=2 Tax=Leisingera sp. ANG59 TaxID=2675221 RepID=UPI0019EEBFFC)

HSP 1 Score: 310 bits (795), Expect = 5.650e-100
Identity = 143/169 (84.62%), Postives = 154/169 (91.12%), Query Frame = 1
Query:    1 DSYEGLHQKLFYAYMVLDLLTQPEMVIKIDDNILLKDGERFGACLDRVAQKGAAYAGRRVGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGYGYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDISQGYGILAMPGLMTKERQRV 507
            D+YEGLH+KLFY+YM+LDLLT P  V+KIDDNILL+D +RF ACLDRVA KGAAYAGRRVGTRRHQDQWHGWHL KCA P VE RGYQYPLPRDYAAGGYGYVL  EGLAAC YMYLAMKEFFAMP VGLEDACVGHAIYAQRLEL+DISQG+G+LAMPGL TKERQR+
Sbjct:  479 DTYEGLHRKLFYSYMLLDLLTAPAQVVKIDDNILLQDADRFAACLDRVADKGAAYAGRRVGTRRHQDQWHGWHLGKCAGPEVEMRGYQYPLPRDYAAGGYGYVLGPEGLAACSYMYLAMKEFFAMPAVGLEDACVGHAIYAQRLELMDISQGHGLLAMPGLTTKERQRL 647          
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Match: A0A1E5ADJ8_9RHOB (Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium (ex Bugula neritina AB1) TaxID=1868286 RepID=A0A1E5ADJ8_9RHOB)

HSP 1 Score: 310 bits (793), Expect = 7.400e-100
Identity = 143/169 (84.62%), Postives = 154/169 (91.12%), Query Frame = 1
Query:    1 DSYEGLHQKLFYAYMVLDLLTQPEMVIKIDDNILLKDGERFGACLDRVAQKGAAYAGRRVGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGYGYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDISQGYGILAMPGLMTKERQRV 507
            DSYEGLHQKLFYAYM+LDLLT P + +KIDDNILLKD +RF ACLDRVA++GA YAGRRVGTRRHQDQWHGWHL KCAD  +E RGYQYPLPRDYAAGGYGYVL  EGLAAC YMYLAMKEFFAMP VGLEDACVGHAIYAQRLEL+DISQG+G+LAMPGL TKERQR+
Sbjct:  463 DSYEGLHQKLFYAYMLLDLLTAPALAVKIDDNILLKDADRFAACLDRVARQGADYAGRRVGTRRHQDQWHGWHLGKCADAGMEMRGYQYPLPRDYAAGGYGYVLGPEGLAACSYMYLAMKEFFAMPAVGLEDACVGHAIYAQRLELMDISQGHGLLAMPGLTTKERQRL 631          
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Match: Q8KW91_9RHOB (RB151 n=2 Tax=Ruegeria sp. PR1b TaxID=185588 RepID=Q8KW91_9RHOB)

HSP 1 Score: 255 bits (652), Expect = 9.750e-79
Identity = 115/165 (69.70%), Postives = 134/165 (81.21%), Query Frame = 1
Query:    1 DSYEGLHQKLFYAYMVLDLLTQPEMVIKIDDNILLKDGERFGACLDRVAQKGAAYAGRRVGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGYGYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDISQGYGILAMPGLMTKE 495
            D+YEGLH+KLFYAY++LDLLT P +V+KIDDNI ++D E F ACLD V    A  AGR+VG  RH+ QWHGWH+ KCADP++E RGYQYPLPR YAAGG+GYVL  EGL ACGYMYLAMK FF MP VGLEDACVGHA+YAQ LEL+D+S    +LA+PGL TKE
Sbjct:  484 DNYEGLHRKLFYAYLLLDLLTTPALVVKIDDNIEMQDAEAFAACLDAVEAAKAPVAGRQVGGERHEGQWHGWHIGKCADPMIETRGYQYPLPRVYAAGGHGYVLGPEGLRACGYMYLAMKAFFDMPAVGLEDACVGHALYAQNLELMDLSTPDNLLALPGLTTKE 648          
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Match: UPI001D1345CB (glycosyltransferase family 2 protein n=1 Tax=Donghicola mangrovi TaxID=2729614 RepID=UPI001D1345CB)

HSP 1 Score: 253 bits (646), Expect = 4.670e-78
Identity = 110/165 (66.67%), Postives = 136/165 (82.42%), Query Frame = 1
Query:    1 DSYEGLHQKLFYAYMVLDLLTQPEMVIKIDDNILLKDGERFGACLDRVAQKGAAYAGRRVGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGYGYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDISQGYGILAMPGLMTKE 495
            D+YE LH+KLFYA+ +LDLL +PE+V+KIDDN++L D + F  CL +V  +GAAYAGR+VG  +H  QWHGWHL KCADP++E RGYQYPLPR YAAGG+GY+L  EGLAAC YMYL+M+ FFAMPVVGLEDACVGHA YAQ +++LD+S    +LA+PGL TKE
Sbjct:  462 DNYESLHRKLFYAFTLLDLLAKPELVVKIDDNLVLVDAQAFSECLQQVVDQGAAYAGRKVGAAQHHSQWHGWHLGKCADPVIETRGYQYPLPRHYAAGGHGYILGPEGLAACAYMYLSMQAFFAMPVVGLEDACVGHAAYAQGIDILDLSDPDRLLALPGLATKE 626          
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Match: A0A4R2R608_9RHOB (Glycosyl transferase family 2 n=1 Tax=Rhodovulum bhavnagarense TaxID=992286 RepID=A0A4R2R608_9RHOB)

HSP 1 Score: 231 bits (589), Expect = 1.190e-69
Identity = 104/166 (62.65%), Postives = 128/166 (77.11%), Query Frame = 1
Query:    1 DSYEGLHQKLFYAYMVLDLLTQPEMVIKIDDNILLKDGERFGACLDRVAQKGAAYAGRRVGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGYGYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDISQGYGILAMPGLMTKER 498
            D+YE LH+K+FYA M++ L+ +P+ ++K+DDN  L D + F   L RVA+ GA YAGRRVG  +H  QWHGWH+SKCADP +E +GYQYPLP++YAAGGYGYVL R+G+AAC YMYLAMK FFAM  VGLEDA VGHAIYA+ L L D+S     LA+PGL T ER
Sbjct:  468 DNYESLHRKVFYAVMLVHLVAEPDWLVKLDDNSRLNDADTFRQTLCRVAENGAPYAGRRVGAAKHHTQWHGWHISKCADPEIEEKGYQYPLPQNYAAGGYGYVLGRDGMAACAYMYLAMKAFFAMRAVGLEDAYVGHAIYAKGLSLFDVSSDEHRLALPGLTTSER 633          
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Match: A0A0P1GWP0_9RHOB (Uncharacterized protein n=2 Tax=Phaeobacter sp. CECT 5382 TaxID=1712645 RepID=A0A0P1GWP0_9RHOB)

HSP 1 Score: 226 bits (575), Expect = 9.310e-68
Identity = 98/161 (60.87%), Postives = 124/161 (77.02%), Query Frame = 1
Query:    1 DSYEGLHQKLFYAYMVLDLLTQPEMVIKIDDNILLKDGERFGACLDRVAQKGAAYAGRRVGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGYGYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDISQGYGILAMPGL 483
            D+YE LH+K+FYA  +LDL+  P  V+K+DD++ L DG      +D +  +   YAG+RVGT  H++QWHGWHLSKC DP++E RGYQ+PLPR+YAAGGYGYVL R+GL AC YMYLAMKEFFAM  +GLED  +GHAIYA+ L+L DIS+   +LAMPGL
Sbjct:  451 DNYESLHRKVFYALTLLDLVANPAFVLKLDDDLFLADGPELSVLMDDLEAQNVHYAGKRVGTSHHKNQWHGWHLSKCEDPVIEQRGYQFPLPREYAAGGYGYVLGRKGLEACSYMYLAMKEFFAMRTIGLEDVYIGHAIYAENLKLYDISREENLLAMPGL 611          
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Match: A0A2G6FLP6_9DELT (Uncharacterized protein n=3 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2G6FLP6_9DELT)

HSP 1 Score: 190 bits (482), Expect = 4.190e-54
Identity = 83/161 (51.55%), Postives = 107/161 (66.46%), Query Frame = 1
Query:    1 DSYEGLHQKLFYAYMVLDLLTQPEMVIKIDDNILLKDGERFGACLDRVAQKGAAYAGRRVGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGYGYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDISQGYGILAMPGL 483
            D+YE LH+K+FYA + + L+  P  ++KIDDN+ L D   F   ++      +  +GR VGTR+H  QWHGWH+ KC D  +  RGY YPLPR Y AGGYGY+LN  GL AC  M+++MKEFF M  VGLEDA VGHA+YA   E+ DI+    +LA PGL
Sbjct:  469 DTYENLHEKMFYAILTIFLVGPPRSIVKIDDNLHLDDARIFTQTIENFLSSQSCCSGRVVGTRQHDSQWHGWHIGKCTDETMNTRGYTYPLPRRYPAGGYGYILNTAGLEACAKMFMSMKEFFRMDAVGLEDAVVGHALYAYEKEITDITDDNSLLAFPGL 629          
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Match: UPI0009F26B54 (hypothetical protein n=1 Tax=Pseudophaeobacter leonis TaxID=1144477 RepID=UPI0009F26B54)

HSP 1 Score: 176 bits (445), Expect = 6.430e-54
Identity = 77/109 (70.64%), Postives = 92/109 (84.40%), Query Frame = 1
Query:  178 VGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGYGYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDISQGYGILAMPGLMTKERQR 504
            +G  RH+ QWHGWH+ KCADPL+EARGYQYPLP+ YAAGG+GYVL+ +GL+AC +MYLAMKEFFAM  VGLEDACVGHA+YAQ L+LLD+S    +LA+PGL TKE  R
Sbjct:    1 MGGARHEGQWHGWHIGKCADPLIEARGYQYPLPQAYAAGGHGYVLSPKGLSACSFMYLAMKEFFAMRSVGLEDACVGHALYAQNLDLLDLSTPDNLLALPGLTTKECHR 109          
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Match: A0A2G6M7Y4_9DELT (Uncharacterized protein n=1 Tax=Desulfobulbus propionicus TaxID=894 RepID=A0A2G6M7Y4_9DELT)

HSP 1 Score: 184 bits (466), Expect = 8.620e-52
Identity = 82/161 (50.93%), Postives = 105/161 (65.22%), Query Frame = 1
Query:    1 DSYEGLHQKLFYAYMVLDLLTQPEMVIKIDDNILLKDGERFGACLDRVAQKGAAYAGRRVGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGYGYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDISQGYGILAMPGL 483
            D+YE LH+K+F+A + + L+  P++V+KIDDN+ L D       ++      +   GR V TRRH  Q HGWH+ KC D  +  RGY YPLPR Y AGGYGY+LN  GL AC  M+++MKEFF M  VGLEDA VGHA+YA   E+ DIS    +LA PGL
Sbjct:  469 DTYENLHEKMFFAILTIFLIGPPQIVVKIDDNLHLDDARILTQTIENFISSKSCCGGRVVDTRRHDSQCHGWHIGKCTDETMNTRGYTYPLPRRYPAGGYGYILNTSGLEACAKMFMSMKEFFRMDAVGLEDAAVGHALYAYEKEITDISDDNSLLAFPGL 629          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106081.959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
UPI00040BAD094.270e-10184.62glycosyltransferase family 2 protein n=3 Tax=Leisi... [more]
UPI0019EEBFFC5.650e-10084.62Glycosyltransferase n=2 Tax=Leisingera sp. ANG59 T... [more]
A0A1E5ADJ8_9RHOB7.400e-10084.62Uncharacterized protein n=1 Tax=Rhodobacteraceae b... [more]
Q8KW91_9RHOB9.750e-7969.70RB151 n=2 Tax=Ruegeria sp. PR1b TaxID=185588 RepID... [more]
UPI001D1345CB4.670e-7866.67glycosyltransferase family 2 protein n=1 Tax=Dongh... [more]
A0A4R2R608_9RHOB1.190e-6962.65Glycosyl transferase family 2 n=1 Tax=Rhodovulum b... [more]
A0A0P1GWP0_9RHOB9.310e-6860.87Uncharacterized protein n=2 Tax=Phaeobacter sp. CE... [more]
A0A2G6FLP6_9DELT4.190e-5451.55Uncharacterized protein n=3 Tax=Deltaproteobacteri... [more]
UPI0009F26B546.430e-5470.64hypothetical protein n=1 Tax=Pseudophaeobacter leo... [more]
A0A2G6M7Y4_9DELT8.620e-5250.93Uncharacterized protein n=1 Tax=Desulfobulbus prop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106081contigEcto-sp8_S_contig106081:2..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size507
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143158.9072437-CDS-Ecto-sp8_S_contig106081:1..5081681143158.9072437-CDS-Ecto-sp8_S_contig106081:1..508Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106081 2..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106081.959.1prot_Ecto-sp8_S_contig106081.959.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106081 2..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106081.959.1

>prot_Ecto-sp8_S_contig106081.959.1 ID=prot_Ecto-sp8_S_contig106081.959.1|Name=mRNA_Ecto-sp8_S_contig106081.959.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=169bp
DSYEGLHQKLFYAYMVLDLLTQPEMVIKIDDNILLKDGERFGACLDRVAQ
KGAAYAGRRVGTRRHQDQWHGWHLSKCADPLVEARGYQYPLPRDYAAGGY
GYVLNREGLAACGYMYLAMKEFFAMPVVGLEDACVGHAIYAQRLELLDIS
QGYGILAMPGLMTKERQRV
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mRNA from alignment at Ecto-sp8_S_contig106081:2..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106081.959.1 ID=mRNA_Ecto-sp8_S_contig106081.959.1|Name=mRNA_Ecto-sp8_S_contig106081.959.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=507bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106081:2..508+ (Ectocarpus species8 EcLAC_412)
GACAGCTACGAAGGGCTGCATCAGAAATTGTTCTACGCCTATATGGTCCT AGATTTGCTCACTCAGCCTGAGATGGTCATTAAGATTGATGACAACATCT TGCTAAAGGACGGGGAGCGTTTTGGCGCCTGTTTGGATCGGGTGGCGCAA AAGGGCGCGGCCTATGCCGGTCGCCGGGTCGGGACGCGCAGGCACCAGGA TCAATGGCACGGCTGGCACCTCTCCAAATGCGCCGATCCTTTGGTCGAAG CCCGTGGCTATCAATATCCGCTGCCGCGTGATTATGCTGCCGGCGGTTAT GGCTACGTCTTGAACCGAGAGGGGCTCGCGGCCTGTGGGTATATGTATCT GGCCATGAAAGAGTTTTTTGCCATGCCGGTGGTTGGCCTGGAAGATGCCT GCGTCGGACACGCAATCTATGCCCAAAGATTGGAGCTCCTGGATATCTCT CAAGGCTACGGCATTCTGGCGATGCCGGGGCTGATGACCAAGGAACGGCA GCGGGTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106081:2..508+

>mRNA_Ecto-sp8_S_contig106081.959.1 ID=mRNA_Ecto-sp8_S_contig106081.959.1|Name=mRNA_Ecto-sp8_S_contig106081.959.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106081:2..508+ (Ectocarpus species8 EcLAC_412)
GACAGCTACGAAGGGCTGCATCAGAAATTGTTCTACGCCTATATGGTCCT
AGATTTGCTCACTCAGCCTGAGATGGTCATTAAGATTGATGACAACATCT
TGCTAAAGGACGGGGAGCGTTTTGGCGCCTGTTTGGATCGGGTGGCGCAA
AAGGGCGCGGCCTATGCCGGTCGCCGGGTCGGGACGCGCAGGCACCAGGA
TCAATGGCACGGCTGGCACCTCTCCAAATGCGCCGATCCTTTGGTCGAAG
CCCGTGGCTATCAATATCCGCTGCCGCGTGATTATGCTGCCGGCGGTTAT
GGCTACGTCTTGAACCGAGAGGGGCTCGCGGCCTGTGGGTATATGTATCT
GGCCATGAAAGAGTTTTTTGCCATGCCGGTGGTTGGCCTGGAAGATGCCT
GCGTCGGACACGCAATCTATGCCCAAAGATTGGAGCTCCTGGATATCTCT
CAAGGCTACGGCATTCTGGCGATGCCGGGGCTGATGACCAAGGAACGGCA
GCGGGTC
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