mRNA_Ecto-sp8_S_contig106070.957.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106070.957.1
Unique NamemRNA_Ecto-sp8_S_contig106070.957.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Match: A0A0U2UR81_9MAXI (Protein disulfide-isomerase (Fragment) n=1 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2UR81_9MAXI)

HSP 1 Score: 235 bits (600), Expect = 6.460e-74
Identity = 117/153 (76.47%), Postives = 134/153 (87.58%), Query Frame = 1
Query:   10 LLFSSLLFGFSLAEITKDEGVLVLTEANFQEAIDAHELLLVEFYAPWCGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTLKFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEIAVIGFF 468
            L F  LL G S AE+ K+EGVLVL EANFQE ID +E +LVEFYAPWCGHCKALAPE+ KAAQ LAEK+S I LGKVDATEE KLAEKF++RGYPTLKF++NGK++EY+GGRTADTIV+WLEKKTGP AKTL+SVD AK+FI DN+IAVIGFF
Sbjct:    7 LTFCLLLVGAS-AEVKKEEGVLVLGEANFQEVIDGNEFVLVEFYAPWCGHCKALAPEYAKAAQALAEKDSKILLGKVDATEEGKLAEKFEIRGYPTLKFFRNGKEMEYSGGRTADTIVSWLEKKTGPPAKTLDSVDTAKSFIEDNKIAVIGFF 158          
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Match: UPI000C78A058 (LOW QUALITY PROTEIN: protein disulfide-isomerase 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78A058)

HSP 1 Score: 235 bits (600), Expect = 4.200e-73
Identity = 112/142 (78.87%), Postives = 128/142 (90.14%), Query Frame = 1
Query:   43 LAEITKDEGVLVLTEANFQEAIDAHELLLVEFYAPWCGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTLKFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEIAVIGFF 468
            L E+TKDEGVLVLTE+NFQE +D +E +LVEFYAPWCGHCK+LAPE+ KAAQTLAEKES I LGKVDATEE KLAEKF+VRGYPTLK ++NGK  EYNGGRTA+TIV+WLEKKTGP AKTLE+VD AKAF+ +N+IAVIGFF
Sbjct:   14 LGEVTKDEGVLVLTESNFQEVVDGNEFVLVEFYAPWCGHCKSLAPEYAKAAQTLAEKESSILLGKVDATEEGKLAEKFEVRGYPTLKLFRNGKASEYNGGRTAETIVSWLEKKTGPPAKTLETVDAAKAFVEENDIAVIGFF 155          
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Match: A0A0U2UNH6_ACAPC (Protein disulfide-isomerase n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2UNH6_ACAPC)

HSP 1 Score: 211 bits (538), Expect = 1.040e-63
Identity = 100/141 (70.92%), Postives = 118/141 (83.69%), Query Frame = 1
Query:   46 AEITKDEGVLVLTEANFQEAIDAHELLLVEFYAPWCGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTLKFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEIAVIGFF 468
            AE+ K++GVLVLT  NFQE ID +E +LVEFYAPWCGHCKALAPE+ KAAQ LA+K+S I LGKVDAT ES L EKF++RGYPTLKF++NGK +EY+GGRTADTIV+WLEKKTGP AK L  VD AKAF   N++ V+GFF
Sbjct:   18 AEVEKEDGVLVLTTDNFQETIDGNEFVLVEFYAPWCGHCKALAPEYAKAAQQLADKDSNILLGKVDATVESSLGEKFEIRGYPTLKFFRNGKAVEYSGGRTADTIVSWLEKKTGPPAKPLADVDAAKAFADGNDVVVVGFF 158          
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Match: A0A7R9SF69_9CRUS (Protein disulfide-isomerase (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9SF69_9CRUS)

HSP 1 Score: 211 bits (536), Expect = 3.160e-63
Identity = 100/140 (71.43%), Postives = 119/140 (85.00%), Query Frame = 1
Query:   49 EITKDEGVLVLTEANFQEAIDAHELLLVEFYAPWCGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTLKFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEIAVIGFF 468
            EITKDEGVLVL + NF +AI  +EL+LVEFYAPWCGHCKA+APE+VKAAQ L E ES IKL KVDATEES+LAEK++VRGYPTLKF++NGK +EY GGRT+D IV WL K+TGP AKTL +V+EAK  I D+E+ V+GFF
Sbjct:   32 EITKDEGVLVLKKTNFDKAIAENELILVEFYAPWCGHCKAIAPEYVKAAQKLVETESSIKLAKVDATEESELAEKYNVRGYPTLKFFRNGKPMEYTGGRTSDEIVNWLNKRTGPPAKTLSTVEEAKKTIEDHEVIVVGFF 171          
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Match: UPI00096B6749 (LOW QUALITY PROTEIN: protein disulfide-isomerase-like n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B6749)

HSP 1 Score: 209 bits (532), Expect = 9.310e-63
Identity = 102/145 (70.34%), Postives = 120/145 (82.76%), Query Frame = 1
Query:   34 GFSLAEITKDEGVLVLTEANFQEAIDAHELLLVEFYAPWCGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTLKFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEIAVIGFF 468
             F+  +I  DEGVLVLT+ NF+ AI  +E +LVEFYAPWCGHCKALAPE+VKAA+TLA+KES IKL KVDATEE +LAE+  VRGYPTLKF++NG  +EYNGGR AD IV W+EKKTGPAAK L++VDEAK FI  N +AVIGFF
Sbjct:   15 AFAADDIKTDEGVLVLTKGNFKTAIADNEYVLVEFYAPWCGHCKALAPEYVKAAKTLADKESSIKLAKVDATEEQELAEEHGVRGYPTLKFFRNGNPIEYNGGRQADDIVAWVEKKTGPAAKDLKTVDEAKEFIEANNVAVIGFF 159          
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Match: A0A023EPF4_AEDAL (Protein disulfide isomerase prolyl 4-hydroxylase beta subunit (Fragment) n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A023EPF4_AEDAL)

HSP 1 Score: 202 bits (515), Expect = 1.020e-62
Identity = 93/141 (65.96%), Postives = 118/141 (83.69%), Query Frame = 1
Query:   46 AEITKDEGVLVLTEANFQEAIDAHELLLVEFYAPWCGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTLKFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEIAVIGFF 468
            AE+ +++GVLVLT+ NFQ  ++ +E +LVEFYAPWCGHCKALAPE+ KAA+ LAEK S IKLGKVDATEE +LAEK  VRGYPTLKF+++G  +EY GGR  DTI++WLEKKTGPAAK LE+V +A+ F+ +N +AV+GFF
Sbjct:   23 AEVKEEDGVLVLTKDNFQSVVEGNEFVLVEFYAPWCGHCKALAPEYAKAAKALAEKNSNIKLGKVDATEEQELAEKHGVRGYPTLKFFRSGTPIEYTGGREKDTIISWLEKKTGPAAKELETVADAEEFLKENNVAVVGFF 163          
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Match: W6MH36_PAGBR (Protein disulfide-isomerase (Fragment) n=1 Tax=Pagurus bernhardus TaxID=174397 RepID=W6MH36_PAGBR)

HSP 1 Score: 207 bits (526), Expect = 3.860e-62
Identity = 100/152 (65.79%), Postives = 125/152 (82.24%), Query Frame = 1
Query:   13 LFSSLLFGFSLAEITKDEGVLVLTEANFQEAIDAHELLLVEFYAPWCGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTLKFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEIAVIGFF 468
            L ++L    + +E+  DEGVLVLT+ NF+ A+DA+E +LVEFYAPWCGHCKALAPEFVKAA +L EK+S IKLGKVDATEE+ LAE+  VRGYPTLKF+++GK ++YNGGR AD IV+WL KKTGP A+ + SVD+AKAFIA+  + VIGFF
Sbjct:   23 LLATLALSATASEVRLDEGVLVLTKDNFKTALDANEFVLVEFYAPWCGHCKALAPEFVKAATSLTEKDSAIKLGKVDATEETDLAEEHGVRGYPTLKFFRSGKPVDYNGGRQADDIVSWLLKKTGPPARAIASVDDAKAFIAEKPVVVIGFF 174          
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Match: UPI001E6706C5 (protein disulfide-isomerase-like isoform X1 n=3 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E6706C5)

HSP 1 Score: 207 bits (528), Expect = 4.270e-62
Identity = 102/153 (66.67%), Postives = 126/153 (82.35%), Query Frame = 1
Query:   10 LLFSSLLFGFSLAEITKDEGVLVLTEANFQEAIDAHELLLVEFYAPWCGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTLKFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEIAVIGFF 468
            LL + +L  F+  +ITKDEGVLVLT+ NF++A + HE +LVEFYAPWCGHCKALAPE+VKAA  L E+ES IKLGKVDATEE++LAE+  VRGYPTLKF+++GK +EYNGGR AD IV WL KKTGP AK++ SV+EAKAFI +  + +IGFF
Sbjct:   10 LLATLVLAVFADEDITKDEGVLVLTKDNFKKATEDHEFILVEFYAPWCGHCKALAPEYVKAAAKLVEQESEIKLGKVDATEETELAEEHGVRGYPTLKFFRSGKPIEYNGGRQADDIVNWLLKKTGPPAKSVTSVEEAKAFIGEKPVVIIGFF 162          
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Match: A0A1B6MND6_9HEMI (Thioredoxin domain-containing protein n=2 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6MND6_9HEMI)

HSP 1 Score: 196 bits (499), Expect = 8.680e-62
Identity = 93/143 (65.03%), Postives = 118/143 (82.52%), Query Frame = 1
Query:   40 SLAEITKDEGVLVLTEANFQEAIDAHELLLVEFYAPWCGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTLKFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEIAVIGFF 468
            S AEIT+DEGVLV T+ NF+E +  +E +LVEFYAPWCGHCKALAPE+VKAA++L +  SPIKL KVDAT+ES+LAE+  VRGYPTLKF++NG  + Y GGR+A  IV+WL KKTGP AK LE+VD+AK FI  +++A++GFF
Sbjct:   17 SQAEITEDEGVLVFTKDNFKEGLSENEFVLVEFYAPWCGHCKALAPEYVKAAESLKKAGSPIKLAKVDATQESELAEEHGVRGYPTLKFFRNGAAIPYGGGRSAKDIVSWLTKKTGPVAKELENVDQAKEFIEASDVALVGFF 159          
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Match: A0A023ERN0_AEDAL (Putative procollagen-proline 2-oxoglutarate 4-dioxygenase proline 4-hydroxylase beta polypeptide (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A023ERN0_AEDAL)

HSP 1 Score: 202 bits (515), Expect = 1.060e-61
Identity = 93/141 (65.96%), Postives = 118/141 (83.69%), Query Frame = 1
Query:   46 AEITKDEGVLVLTEANFQEAIDAHELLLVEFYAPWCGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTLKFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEIAVIGFF 468
            AE+ +++GVLVLT+ NFQ  ++ +E +LVEFYAPWCGHCKALAPE+ KAA+ LAEK S IKLGKVDATEE +LAEK  VRGYPTLKF+++G  +EY GGR  DTI++WLEKKTGPAAK LE+V +A+ F+ +N +AV+GFF
Sbjct:   23 AEVKEEDGVLVLTKDNFQSVVEGNEFVLVEFYAPWCGHCKALAPEYAKAAKALAEKNSNIKLGKVDATEEQELAEKHGVRGYPTLKFFRSGTPIEYTGGREKDTIISWLEKKTGPAAKELETVADAEEFLKENNVAVVGFF 163          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106070.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2UR81_9MAXI6.460e-7476.47Protein disulfide-isomerase (Fragment) n=1 Tax=Pse... [more]
UPI000C78A0584.200e-7378.87LOW QUALITY PROTEIN: protein disulfide-isomerase 2... [more]
A0A0U2UNH6_ACAPC1.040e-6370.92Protein disulfide-isomerase n=1 Tax=Acartia pacifi... [more]
A0A7R9SF69_9CRUS3.160e-6371.43Protein disulfide-isomerase (Fragment) n=1 Tax=Arg... [more]
UPI00096B67499.310e-6370.34LOW QUALITY PROTEIN: protein disulfide-isomerase-l... [more]
A0A023EPF4_AEDAL1.020e-6265.96Protein disulfide isomerase prolyl 4-hydroxylase b... [more]
W6MH36_PAGBR3.860e-6265.79Protein disulfide-isomerase (Fragment) n=1 Tax=Pag... [more]
UPI001E6706C54.270e-6266.67protein disulfide-isomerase-like isoform X1 n=3 Ta... [more]
A0A1B6MND6_9HEMI8.680e-6265.03Thioredoxin domain-containing protein n=2 Tax=Cica... [more]
A0A023ERN0_AEDAL1.060e-6165.96Putative procollagen-proline 2-oxoglutarate 4-diox... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106070contigEcto-sp8_S_contig106070:1..468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start1
Seed ortholog score204.1
Seed ortholog evalue4.6e-50
Seed eggNOG ortholog7070.TC003523-PA
Preferred namePdi
Model size468
KEGG koko:K09580
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005791,GO:0006457,GO:0006950,GO:0008150,GO:0009966,GO:0009987,GO:0010646,GO:0010941,GO:0012505,GO:0016853,GO:0016860,GO:0016864,GO:0023051,GO:0031967,GO:0031975,GO:0033554,GO:0034976,GO:0036477,GO:0042981,GO:0043025,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044297,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045169,GO:0048471,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060187,GO:0065007,GO:0070732,GO:0080134,GO:0080135,GO:0097458,GO:0140096,GO:1900407,GO:1902175,GO:1902531,GO:1902882,GO:1903201,GO:2001233,GO:2001242
Exons1
EggNOG free text desc.isomerase activity. It is involved in the biological process described with cell redox homeostasis
EggNOG OGs38GTB@33154,3BBAA@33208,3CY8R@33213,3SGA3@50557,41U8H@6656,COG0526@1,KOG0190@2759
EC5.3.4.1
Cds size468
COG Functional cat.O
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143158.7823858-CDS-Ecto-sp8_S_contig106070:0..4681681143158.7823858-CDS-Ecto-sp8_S_contig106070:0..468Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106070 1..468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106070.957.1prot_Ecto-sp8_S_contig106070.957.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106070 1..468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106070.957.1

>prot_Ecto-sp8_S_contig106070.957.1 ID=prot_Ecto-sp8_S_contig106070.957.1|Name=mRNA_Ecto-sp8_S_contig106070.957.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=156bp
MKLLLFSSLLFGFSLAEITKDEGVLVLTEANFQEAIDAHELLLVEFYAPW
CGHCKALAPEFVKAAQTLAEKESPIKLGKVDATEESKLAEKFDVRGYPTL
KFYKNGKDLEYNGGRTADTIVTWLEKKTGPAAKTLESVDEAKAFIADNEI
AVIGFF
back to top

mRNA from alignment at Ecto-sp8_S_contig106070:1..468-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106070.957.1 ID=mRNA_Ecto-sp8_S_contig106070.957.1|Name=mRNA_Ecto-sp8_S_contig106070.957.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=468bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106070:1..468- (Ectocarpus species8 EcLAC_412)
ATGAAGCTTTTGCTTTTTTCTTCCCTGTTGTTTGGATTCTCTTTGGCCGA GATAACCAAGGATGAAGGAGTGCTTGTCCTCACTGAGGCTAATTTCCAGG AGGCCATTGATGCTCATGAGTTATTACTTGTAGAATTTTATGCCCCTTGG TGTGGACACTGCAAGGCTCTTGCCCCAGAATTTGTAAAAGCTGCCCAAAC CTTGGCTGAGAAAGAATCTCCCATCAAGCTAGGCAAAGTTGATGCTACCG AGGAATCCAAGCTAGCAGAGAAGTTTGATGTCCGTGGCTATCCAACTCTC AAGTTCTACAAGAATGGGAAAGATCTTGAGTATAATGGTGGCCGAACTGC AGATACCATCGTGACGTGGCTTGAGAAGAAAACAGGTCCAGCTGCCAAAA CTCTGGAAAGTGTGGATGAAGCCAAAGCCTTTATTGCCGACAATGAAATT GCTGTCATTGGATTCTTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106070:1..468-

>mRNA_Ecto-sp8_S_contig106070.957.1 ID=mRNA_Ecto-sp8_S_contig106070.957.1|Name=mRNA_Ecto-sp8_S_contig106070.957.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106070:1..468- (Ectocarpus species8 EcLAC_412)
ATGAAGCTTTTGCTTTTTTCTTCCCTGTTGTTTGGATTCTCTTTGGCCGA
GATAACCAAGGATGAAGGAGTGCTTGTCCTCACTGAGGCTAATTTCCAGG
AGGCCATTGATGCTCATGAGTTATTACTTGTAGAATTTTATGCCCCTTGG
TGTGGACACTGCAAGGCTCTTGCCCCAGAATTTGTAAAAGCTGCCCAAAC
CTTGGCTGAGAAAGAATCTCCCATCAAGCTAGGCAAAGTTGATGCTACCG
AGGAATCCAAGCTAGCAGAGAAGTTTGATGTCCGTGGCTATCCAACTCTC
AAGTTCTACAAGAATGGGAAAGATCTTGAGTATAATGGTGGCCGAACTGC
AGATACCATCGTGACGTGGCTTGAGAAGAAAACAGGTCCAGCTGCCAAAA
CTCTGGAAAGTGTGGATGAAGCCAAAGCCTTTATTGCCGACAATGAAATT
GCTGTCATTGGATTCTTC
back to top