mRNA_Ecto-sp8_S_contig106033.953.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106033.953.1
Unique NamemRNA_Ecto-sp8_S_contig106033.953.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Match: Q8QNK7_ESV1K (EsV-1-64 n=2 Tax=root TaxID=1 RepID=Q8QNK7_ESV1K)

HSP 1 Score: 325 bits (832), Expect = 1.170e-111
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 1
Query:    1 MHSSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIFEQKVGIRDTNISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHQTLDFVAASLDACTASGINVEIKTVFKEKFIKVSKMYYDQVQLQMEVADLEKTHLVQHYIRMPDQPIVVHEI 504
            MHSSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIFEQKVGIRD+NISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPH TLDFVAASLDACTASGINVEIKTVFKEK IKVSKMYYDQVQLQMEV+DLEKTHLVQHYIRMP+QPIVVHEI
Sbjct:    1 MHSSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIFEQKVGIRDSNISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHPTLDFVAASLDACTASGINVEIKTVFKEKVIKVSKMYYDQVQLQMEVSDLEKTHLVQHYIRMPNQPIVVHEI 168          
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Match: B5LWE1_9PHYC (Putative exonuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE1_9PHYC)

HSP 1 Score: 178 bits (451), Expect = 1.250e-53
Identity = 97/169 (57.40%), Postives = 117/169 (69.23%), Query Frame = 1
Query:    4 HSSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIFEQK-VGIRDTNISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHQTLDFVAASLDACTASGINVEIKTVFKEKFIK-VSKMYYDQVQLQMEVADLEKTHLVQHYIRMPDQPIVVHEI 504
            H S+  IL  PRI QRTPEW+ +R+  VTASE ST+IAQGKG   +  +K      +N S+E+   G+ NE  VV  YRE FP   V HDLSI  H+ LDFVAASLDACT +GINVEIKT FK + +  + K Y DQVQLQMEVADL+ THLV  YI +P QP+VVH+I
Sbjct:    5 HPSVLSILSGPRIEQRTPEWFAFRRSHVTASEVSTVIAQGKGARSLLHRKKFQAVSSNFSTEFTDRGSANEGTVVEKYRELFPGVVVHHDLSITRHRDLDFVAASLDACTNTGINVEIKTSFKPRPVTTIPKSYRDQVQLQMEVADLDLTHLVYQYINIPGQPVVVHQI 173          
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Match: Q6XLZ3_9PHYC (FirrV-1-B43 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLZ3_9PHYC)

HSP 1 Score: 174 bits (440), Expect = 1.900e-51
Identity = 90/170 (52.94%), Postives = 117/170 (68.82%), Query Frame = 1
Query:    4 HSSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIFEQKV--GIRDTNISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHQTLDFVAASLDACTASGINVEIKTVFKEKFI-KVSKMYYDQVQLQMEVADLEKTHLVQHYIRMPDQPIVVHEI 504
            H S+  IL  P+I QR+PEW+ +RK  VTASEAS +IAQGKG   +  +K    +  ++ S+E+  IG +NE  +V  YR  +P+  V   L II HQ  DF+AASLDACT +GINVE+KT FK   I  + K YYDQVQLQMEVA+L+ THLV  YI +PDQP++VHE+
Sbjct:    6 HPSVLLILASPQIIQRSPEWFAFRKAHVTASEASIVIAQGKGLRTLMNRKKYQAVNGSSFSNEFTKIGAENESKIVEKYRLMYPDVIVHDQLPIIKHQRFDFLAASLDACTNTGINVEMKTSFKTTRIHSIPKAYYDQVQLQMEVANLDMTHLVYQYINLPDQPVIVHEV 175          
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Match: A0A6C0KJE2_9ZZZZ (YqaJ domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KJE2_9ZZZZ)

HSP 1 Score: 73.6 bits (179), Expect = 3.180e-12
Identity = 50/159 (31.45%), Postives = 78/159 (49.06%), Query Frame = 1
Query:   13 IKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIFEQKV-----GIRDTNISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHQTLDFVAASLDACTASGIN----VEIKTVFKEKFIKVSKM-YYDQVQLQMEVADLEKTHLVQ 459
            I+ +   P+ AQ+T EWY +RK  +T S     ++     +++  +K+     G +  ++S   +  G   E      Y  ++  + V  +   IPH+T+ F+AAS D    S  N    VEIK V   +  K+ KM YY Q+QLQMEV DL     V+
Sbjct:  106 IQYLKSVPQPAQKTEEWYSFRKNHLTGSNIWKTLSSQSCINQLIYEKLAPSVSGTKRNSLSESPLNWGHKYEPLTCLFY--EYYNDVVVEEFGCIPHKTIPFLAASPDGIVTSPKNNGRMVEIKNVVSREITKIPKMEYYIQMQLQMEVCDLPDCDFVE 262          
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Match: A0A6C0BEX2_9ZZZZ (YqaJ domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BEX2_9ZZZZ)

HSP 1 Score: 72.4 bits (176), Expect = 4.660e-12
Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = 1
Query:    7 SSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGK--GYDRIFEQKVGIRDT----NISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHQTLDFVAASLDACTASGINVEIKTVFKEKFI-KVSKMYYDQVQLQMEVADLEK 444
            + ++++L+ P++ Q+T +WYE R   +TAS+ +  + +GK     ++ E+K   R+     + ++ +   G   E   V++Y EK     V H+  +I H    F  AS D  T  GI +EIK  FK K    +   YY Q+Q Q++V  LE+
Sbjct:    4 AQLQKLLNIPKVQQKTEKWYEMRMNMITASDFAQALGEGKFGTQKQLIEKKCTPRENENAISKANPFFKWGNMFEPVAVSIY-EKLSNAHV-HEFGLIQHPKYSFFGASPDGITDDGIMLEIKCPFKRKLTGDIPLQYYYQIQGQLDVCGLEE 154          
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Match: A0A6G6XQ18_9VIRU (YqaJ domain-containing protein n=1 Tax=Dishui Lake large algae virus 1 TaxID=2704073 RepID=A0A6G6XQ18_9VIRU)

HSP 1 Score: 68.9 bits (167), Expect = 1.220e-10
Identity = 50/170 (29.41%), Postives = 81/170 (47.65%), Query Frame = 1
Query:   22 ILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIFEQKVGIRDTN--------ISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHQTLDFVAASLDACTASGINVEIKTVFKEKFI-KVSKMYYDQVQLQMEVADL----------EKTHLVQHYIRM 474
            +++ P++ QR+PEW++ RK R+TAS+ +  + +GK     FE + G+            +SS  M  GT  E   +  YR++   +   H+  ++PH T+D   AS D  +  GI +E K   K K    + + Y  Q+Q Q+ V  L          E  H  + YI M
Sbjct:   71 LMEMPQVEQRSPEWHDMRKNRLTASDTAAAMGRGK-----FETRKGLLKKKAFPELSPFVSSPIMKWGTMFEPIALRSYRQR-NGDITCHEFGLVPHPTVDHYGASPDGISELGIMLEFKCPPKRKIDGTIPEQYEIQMQGQLAVCGLRECDYVECGLEDLHTSEEYIEM 234          
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Match: A0A6C0J270_9ZZZZ (YqaJ domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0J270_9ZZZZ)

HSP 1 Score: 63.5 bits (153), Expect = 9.800e-9
Identity = 47/154 (30.52%), Postives = 73/154 (47.40%), Query Frame = 1
Query:    7 SSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIA--QGKGYDRIFEQKV--GIRDTNISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHQTLDFVAASLDACTASGINVEIKTVFKEKFIK--VSKMYYDQVQLQMEVADLEKTH 450
            S I+   +     Q++ EW   R + +TAS  + I    + K    +  +K   G    NI + Y T G   E     +Y   +    + HD  +I H    F+ AS D  T   IN+EIK     + +   +S++YY+Q+QLQMEV +L+ TH
Sbjct:  118 SRIQEFYNRSMTQQKSKEWLNARYECITASVVAKITNNYKSKTLQSMIMEKAHYGKYSKNIKNVYTTYGELYEPLANMVY--SYRTNTITHDFGLIKHPIYSFIGASTDGVTDGLINIEIKCP-TSRIVDGHISRLYYEQMQLQMEVLNLDITH 268          
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Match: A0A5B8IJD0_9VIRU (YqaJ domain-containing protein (Fragment) n=1 Tax=Mimiviridae sp. ChoanoV1 TaxID=2596887 RepID=A0A5B8IJD0_9VIRU)

HSP 1 Score: 62.8 bits (151), Expect = 1.210e-8
Identity = 51/164 (31.10%), Postives = 75/164 (45.73%), Query Frame = 1
Query:    1 MHSSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQG--KGYDRIFEQKVGIRDTNISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHQTLDFVAASLDACTAS--------GINVEIKTVFKEKFIK-VSKMYYDQVQLQMEVADLEKTHLVQ 459
            +   IK +   P+  QRTPEWY +RK R+TAS+  TII     +  D I ++K G       ++ +  G   EE +  +Y  K    +VF +   IPH  +    AS D    S        G  +EIK          + + Y+ QVQ Q+EV DL+    V+
Sbjct:  116 LSEQIKELKKIPQPEQRTPEWYTFRKNRLTASDLGTIIGVNPYEKPDYIVQKKCGFERPFRVNKAIKWGVKYEEVITQIYEHK-NNVKVF-EYGCIPHPVIKHFGASPDGIVDSDSINQDYVGRMLEIKCPSSRDITGFIPEYYHAQVQGQLEVCDLQYCDFVE 277          
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Match: A0A519CLZ1_9EURY (YqaJ domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A519CLZ1_9EURY)

HSP 1 Score: 58.9 bits (141), Expect = 4.180e-7
Identity = 46/161 (28.57%), Postives = 67/161 (41.61%), Query Frame = 1
Query:    1 MHSSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIFEQKVGIRDTNISSEYMTIGTDN--------EEAVVALYREKFPEEEVFHDLSIIPHQTLDFVAASLDACTAS------GINVEIKTVFKEKFIKV-SKMYYDQVQLQMEVADL 438
            + + I  I + P+  QRTPEW+E+R   +TAS A  I       ++I  +K        +   M + T +        E   +  Y  K+  +    D   I H    F+ AS D           G  +EIK V       +  KMY+ Q+QLQME  DL
Sbjct:   95 IENKINVIKNKPQPEQRTPEWFEFRHNLITASSAGKIFESLSSINQIIYEKCSPMVDRSNMSNMPVNTSSPLHWGQKYEPVSILFYEHKYNTK--VEDFGCIQHDKYKFLGASPDGIITDKNSNLHGRMLEIKNVVSRVITGIPKKMYWIQMQLQMETCDL 253          
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Match: A0A6C0J2P8_9ZZZZ (YqaJ domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0J2P8_9ZZZZ)

HSP 1 Score: 58.5 bits (140), Expect = 4.940e-7
Identity = 46/157 (29.30%), Postives = 75/157 (47.77%), Query Frame = 1
Query:   10 SIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIFEQKVGIRDTNISSEYMTI-----GTDNEEAVVALYREKFPEEEVFHDLSIIPHQTLDFVAASLDACTASGINVEIKTVFKEKFIK--VSKMYYDQVQLQMEVADLEKTHLVQ 459
            ++K +   P I QRT EW E RK R+TAS+ S  I  G     + ++K  +   N  ++Y  I     GT  E      Y +K+    + ++  +I  +     AAS D  +  GI +EIK  +  K I   +   Y  Q+Q Q+ V +L++ H ++
Sbjct:   61 TLKELKKIPYIKQRTIEWLEARKNRLTASDLSDAIKDGAASLALAKKKANVIIDN--TDYNAIKPLKWGTMFEAMAERCYSKKYCNINI-NEFGLICDKYNKHFAASPDGISDIGIMIEIKCPYSRKIIDGFIPPKYQTQMQGQLAVCELDECHYIE 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106033.953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
Q8QNK7_ESV1K1.170e-11197.02EsV-1-64 n=2 Tax=root TaxID=1 RepID=Q8QNK7_ESV1K[more]
B5LWE1_9PHYC1.250e-5357.40Putative exonuclease n=1 Tax=Feldmannia species vi... [more]
Q6XLZ3_9PHYC1.900e-5152.94FirrV-1-B43 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A6C0KJE2_9ZZZZ3.180e-1231.45YqaJ domain-containing protein n=1 Tax=viral metag... [more]
A0A6C0BEX2_9ZZZZ4.660e-1230.72YqaJ domain-containing protein n=1 Tax=viral metag... [more]
A0A6G6XQ18_9VIRU1.220e-1029.41YqaJ domain-containing protein n=1 Tax=Dishui Lake... [more]
A0A6C0J270_9ZZZZ9.800e-930.52YqaJ domain-containing protein n=1 Tax=viral metag... [more]
A0A5B8IJD0_9VIRU1.210e-831.10YqaJ domain-containing protein (Fragment) n=1 Tax=... [more]
A0A519CLZ1_9EURY4.180e-728.57YqaJ domain-containing protein n=1 Tax=Euryarchaeo... [more]
A0A6C0J2P8_9ZZZZ4.940e-729.30YqaJ domain-containing protein n=1 Tax=viral metag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106033contigEcto-sp8_S_contig106033:3..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size504
Hectar predicted targeting categoryother localisation
Exons1
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143158.4878118-CDS-Ecto-sp8_S_contig106033:2..5061681143158.4878118-CDS-Ecto-sp8_S_contig106033:2..506Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106033 3..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106033.953.1prot_Ecto-sp8_S_contig106033.953.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106033 3..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106033.953.1

>prot_Ecto-sp8_S_contig106033.953.1 ID=prot_Ecto-sp8_S_contig106033.953.1|Name=mRNA_Ecto-sp8_S_contig106033.953.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=168bp
MHSSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIFEQ
KVGIRDTNISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHQTLD
FVAASLDACTASGINVEIKTVFKEKFIKVSKMYYDQVQLQMEVADLEKTH
LVQHYIRMPDQPIVVHEI
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mRNA from alignment at Ecto-sp8_S_contig106033:3..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106033.953.1 ID=mRNA_Ecto-sp8_S_contig106033.953.1|Name=mRNA_Ecto-sp8_S_contig106033.953.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106033:3..506- (Ectocarpus species8 EcLAC_412)
ATGCACTCTTCCATAAAAAGGATACTCGATTACCCGAGAATCGCCCAGAG AACACCAGAGTGGTACGAATATCGCAAGAAACGTGTCACCGCTTCCGAAG CGTCGACCATCATCGCACAGGGAAAAGGGTACGACCGCATCTTCGAACAA AAGGTCGGTATCCGAGACACCAACATCAGCAGCGAGTACATGACAATCGG GACCGACAACGAAGAAGCCGTCGTCGCGCTATACCGTGAAAAGTTTCCCG AAGAGGAGGTCTTTCACGACCTGTCGATTATCCCTCACCAGACGCTCGAC TTTGTTGCCGCGTCTCTCGATGCGTGCACAGCGAGCGGAATAAACGTGGA GATCAAAACAGTGTTCAAAGAAAAGTTTATTAAAGTTTCCAAGATGTACT ACGACCAGGTCCAGTTGCAGATGGAAGTCGCCGACCTCGAAAAGACGCAC CTGGTGCAACACTACATCCGGATGCCAGACCAGCCGATCGTCGTGCACGA GATC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106033:3..506-

>mRNA_Ecto-sp8_S_contig106033.953.1 ID=mRNA_Ecto-sp8_S_contig106033.953.1|Name=mRNA_Ecto-sp8_S_contig106033.953.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106033:3..506- (Ectocarpus species8 EcLAC_412)
ATGCACTCTTCCATAAAAAGGATACTCGATTACCCGAGAATCGCCCAGAG
AACACCAGAGTGGTACGAATATCGCAAGAAACGTGTCACCGCTTCCGAAG
CGTCGACCATCATCGCACAGGGAAAAGGGTACGACCGCATCTTCGAACAA
AAGGTCGGTATCCGAGACACCAACATCAGCAGCGAGTACATGACAATCGG
GACCGACAACGAAGAAGCCGTCGTCGCGCTATACCGTGAAAAGTTTCCCG
AAGAGGAGGTCTTTCACGACCTGTCGATTATCCCTCACCAGACGCTCGAC
TTTGTTGCCGCGTCTCTCGATGCGTGCACAGCGAGCGGAATAAACGTGGA
GATCAAAACAGTGTTCAAAGAAAAGTTTATTAAAGTTTCCAAGATGTACT
ACGACCAGGTCCAGTTGCAGATGGAAGTCGCCGACCTCGAAAAGACGCAC
CTGGTGCAACACTACATCCGGATGCCAGACCAGCCGATCGTCGTGCACGA
GATC
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