mRNA_Ecto-sp8_S_contig106032.952.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106032.952.1
Unique NamemRNA_Ecto-sp8_S_contig106032.952.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106032.952.1 vs. uniprot
Match: A0A6H5JTW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.860e-21
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   67 EAFSGRRGAEWAGWECRFSGADGRPVAVPEDYVPESLREWDV 192
            EAFSGRRGAEWAGWECRFSGADGRPVAVPEDYVPESLREWDV
Sbjct:   60 EAFSGRRGAEWAGWECRFSGADGRPVAVPEDYVPESLREWDV 101
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BLAST of mRNA_Ecto-sp8_S_contig106032.952.1 vs. uniprot
Match: A0A836C8Z5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.670e-10
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   94 EWAGWECRFSGADGRPVAVPEDYVPESLREWDV 192
            EWAGWECRFS   G+ +++PEDY+PESLREWDV
Sbjct:   51 EWAGWECRFSQVSGQRMSIPEDYIPESLREWDV 83
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BLAST of mRNA_Ecto-sp8_S_contig106032.952.1 vs. uniprot
Match: A0A7J7IK16_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IK16_9RHOD)

HSP 1 Score: 48.5 bits (114), Expect = 7.410e-5
Identity = 19/42 (45.24%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:   67 EAFSGRRGAEWAGWECRFSGADGRPVAVPEDYVPESLREWDV 192
            E F+ R G E+ G+E  F G  G P+ VPE +VP+  R+W+V
Sbjct:   15 EQFASRSGGEFVGFEAHFDGKTGAPIEVPERFVPQEYRDWNV 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106032.952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JTW3_9PHAE1.860e-21100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8Z5_9STRA2.670e-1072.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7J7IK16_9RHOD7.410e-545.24Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106032contigEcto-sp8_S_contig106032:12..221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143158.4544082-CDS-Ecto-sp8_S_contig106032:11..2211681143158.4544082-CDS-Ecto-sp8_S_contig106032:11..221Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106032 12..221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106032.952.1prot_Ecto-sp8_S_contig106032.952.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106032 12..221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106032.952.1

>prot_Ecto-sp8_S_contig106032.952.1 ID=prot_Ecto-sp8_S_contig106032.952.1|Name=mRNA_Ecto-sp8_S_contig106032.952.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=70bp
AAERSASSISPPHPPPTPPPPSEAFSGRRGAEWAGWECRFSGADGRPVAV
PEDYVPESLREWDVEASKLS
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mRNA from alignment at Ecto-sp8_S_contig106032:12..221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106032.952.1 ID=mRNA_Ecto-sp8_S_contig106032.952.1|Name=mRNA_Ecto-sp8_S_contig106032.952.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106032:12..221- (Ectocarpus species8 EcLAC_412)
GCTGCCGAGAGGAGCGCCTCTTCCATCTCCCCACCACACCCGCCGCCGAC
GCCGCCGCCGCCGTCGGAGGCGTTCTCGGGGAGGCGAGGCGCAGAGTGGG
CGGGGTGGGAGTGCCGGTTTTCCGGGGCGGACGGGAGGCCTGTCGCCGTC
CCGGAGGACTACGTGCCCGAGTCGCTTCGGGAGTGGGACGTGGAGGCAAG
CAAGCTCTCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106032:12..221-

>mRNA_Ecto-sp8_S_contig106032.952.1 ID=mRNA_Ecto-sp8_S_contig106032.952.1|Name=mRNA_Ecto-sp8_S_contig106032.952.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106032:12..221- (Ectocarpus species8 EcLAC_412)
GCTGCCGAGAGGAGCGCCTCTTCCATCTCCCCACCACACCCGCCGCCGAC
GCCGCCGCCGCCGTCGGAGGCGTTCTCGGGGAGGCGAGGCGCAGAGTGGG
CGGGGTGGGAGTGCCGGTTTTCCGGGGCGGACGGGAGGCCTGTCGCCGTC
CCGGAGGACTACGTGCCCGAGTCGCTTCGGGAGTGGGACGTGGAGGCAAG
CAAGCTCTCC
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