mRNA_Ecto-sp8_S_contig106020.949.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106020.949.1
Unique NamemRNA_Ecto-sp8_S_contig106020.949.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Match: D8LJJ1_ECTSI (Sir2-type regulatory transcription factor silent information regulator protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ1_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 6.510e-35
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 AVEDSTTAVEQLRELLDAAGGSVTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEGNRKRY 207
            AVEDSTTAV QLRELLDAAGGSVTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSE NRKRY
Sbjct:  189 AVEDSTTAVAQLRELLDAAGGSVTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEDNRKRY 257
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Match: A0A835YXH7_9STRA (NAD-dependent protein deacylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.870e-19
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   31 QLRELLDAAGGSVTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEGNRKRY 207
            +L + L    G V ALTGAG+STDSGIPDYRGP GSYSRGHKPM HDEF+ S  NR+RY
Sbjct:   18 KLHQWLSGIPGPVVALTGAGISTDSGIPDYRGPNGSYSRGHKPMKHDEFMGSHRNRQRY 76
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Match: A0A812WFM4_9DINO (SRT2 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812WFM4_9DINO)

HSP 1 Score: 83.2 bits (204), Expect = 2.120e-17
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   16 TTAVEQLRELLDAAGGSVTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEGNRKRY 207
            T A E+L +    + GS+  LTGAG ST+SGIPDYR P+GSYS+GHKPMTH EF+SS  NR+RY
Sbjct:   31 TQAAERLAQFAQRSRGSLVCLTGAGFSTESGIPDYRSPQGSYSKGHKPMTHQEFVSSCLNRRRY 94
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Match: A0A7R9W2M1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2M1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.290e-16
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   64 SVTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEGNRKRY 207
            SV  LTGAG+ST+SGIPDYRG  GSY RGHKPM HD+F+SSE  R+RY
Sbjct:   25 SVLVLTGAGLSTESGIPDYRGYGGSYHRGHKPMVHDQFMSSEAQRRRY 72
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Match: A0A7S0DMT9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DMT9_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 3.400e-16
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   40 ELLDAAGGSVTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEGNRKRY 207
            E+L  AGG    ++GAG+ST+SGIPDYR P+GSYS+GHKPMTH +F+    NRKRY
Sbjct:   20 EMLQRAGGKTVIISGAGVSTESGIPDYRSPEGSYSKGHKPMTHQDFVRKPHNRKRY 75
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Match: A0A7S3HFZ4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFZ4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.220e-16
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   64 SVTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEGNRKRY 207
            +V  LTGAG+ST SGIPDYRGP GSY RGHKPMTH EF++SE +RKR+
Sbjct:   61 NVLVLTGAGISTSSGIPDYRGPNGSYKRGHKPMTHSEFMTSESSRKRF 108
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Match: A0A8J9SBW6_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SBW6_PHATR)

HSP 1 Score: 75.1 bits (183), Expect = 2.340e-15
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   67 VTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEGNRKRY 207
            +  LTGAG+ST+SGIPDYRG  GSY RGHKPM HD+F+ SE  RKRY
Sbjct:   86 ILCLTGAGLSTESGIPDYRGNNGSYHRGHKPMVHDQFMKSEYQRKRY 132
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Match: A0A7S4F0S6_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F0S6_CHRCT)

HSP 1 Score: 77.4 bits (189), Expect = 3.070e-15
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   76 LTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEGNRKRY 207
            LTGAG+STDSGIPDYR P G+YSRGH+PMTHDEF SS  +R+RY
Sbjct:   22 LTGAGISTDSGIPDYRSPSGAYSRGHRPMTHDEFCSSPAHRQRY 65
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Match: A0A7S0FFA2_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FFA2_9DINO)

HSP 1 Score: 74.7 bits (182), Expect = 3.590e-15
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   25 VEQLRELLDAAGGSVTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEGNRKRY 207
            +E L +++  AGG +  LTGAG+ST+SG+PDYR P+GSYS+GH+PM H +F+    +R RY
Sbjct:   35 LELLVDIVSGAGGRLACLTGAGLSTESGVPDYRSPQGSYSKGHRPMRHQDFVRDPTSRARY 95
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Match: A0A7S1QGI8_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QGI8_ALECA)

HSP 1 Score: 77.0 bits (188), Expect = 3.840e-15
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   25 VEQLRELLDAAGGSVTALTGAGMSTDSGIPDYRGPKGSYSRGHKPMTHDEFLSSEGNRKRY 207
            VE L +L+  A G +  +TGAG ST+SG+PDYR P+GSYS+GHKPM H +F+    NR RY
Sbjct:   19 VELLADLVSNASGRLACITGAGFSTESGVPDYRSPQGSYSKGHKPMRHQDFVKDPANRARY 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106020.949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJJ1_ECTSI6.510e-3597.10Sir2-type regulatory transcription factor silent i... [more]
A0A835YXH7_9STRA9.870e-1969.49NAD-dependent protein deacylase n=1 Tax=Tribonema ... [more]
A0A812WFM4_9DINO2.120e-1762.50SRT2 protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A7R9W2M1_9STRA1.290e-1672.92Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0DMT9_9EUKA3.400e-1662.50Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S3HFZ4_9STRA5.220e-1672.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8J9SBW6_PHATR2.340e-1570.21Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A7S4F0S6_CHRCT3.070e-1577.27Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S0FFA2_9DINO3.590e-1552.46Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S1QGI8_ALECA3.840e-1555.74Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106020contigEcto-sp8_S_contig106020:51..263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score134.0
Seed ortholog evalue2.7e-29
Seed eggNOG ortholog2880.D8LJJ1
Preferred nameSIRT4
Model size213
KEGG koko:K11414
Hectar predicted targeting categoryother localisation
GOsGO:0000820,GO:0002791,GO:0002792,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003950,GO:0004407,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005677,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006082,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006471,GO:0006476,GO:0006520,GO:0006521,GO:0006541,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009064,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010605,GO:0010629,GO:0010639,GO:0010646,GO:0010648,GO:0010656,GO:0010660,GO:0010662,GO:0010664,GO:0010665,GO:0010667,GO:0010817,GO:0010821,GO:0010823,GO:0010941,GO:0010955,GO:0016020,GO:0016043,GO:0016458,GO:0016569,GO:0016570,GO:0016575,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0018193,GO:0018205,GO:0019213,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019866,GO:0023051,GO:0023057,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033238,GO:0033554,GO:0033558,GO:0034979,GO:0034983,GO:0035601,GO:0036211,GO:0040029,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045814,GO:0045833,GO:0045834,GO:0045861,GO:0045892,GO:0045922,GO:0045934,GO:0046320,GO:0046322,GO:0046676,GO:0046883,GO:0046888,GO:0046889,GO:0046890,GO:0047708,GO:0048518,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051223,GO:0051224,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051341,GO:0051716,GO:0060255,GO:0060341,GO:0060548,GO:0061690,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070613,GO:0071704,GO:0071840,GO:0072350,GO:0080090,GO:0090087,GO:0090276,GO:0090278,GO:0090317,GO:0090568,GO:0097159,GO:0098732,GO:0140096,GO:1901363,GO:1901564,GO:1901605,GO:1902679,GO:1903214,GO:1903215,GO:1903216,GO:1903217,GO:1903317,GO:1903318,GO:1903506,GO:1903507,GO:1903530,GO:1903531,GO:1903533,GO:1903747,GO:1903748,GO:1903827,GO:1903828,GO:1904182,GO:1904950,GO:2000112,GO:2000113,GO:2001141
Exons1
EggNOG free text desc.lipoamidase activity
EggNOG OGsCOG0846@1,KOG2683@2759
Cds size213
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143158.291141-CDS-Ecto-sp8_S_contig106020:50..2631681143158.291141-CDS-Ecto-sp8_S_contig106020:50..263Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106020 51..263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106020.949.1prot_Ecto-sp8_S_contig106020.949.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106020 51..263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106020.949.1

>prot_Ecto-sp8_S_contig106020.949.1 ID=prot_Ecto-sp8_S_contig106020.949.1|Name=mRNA_Ecto-sp8_S_contig106020.949.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=71bp
AVEDSTTAVEQLRELLDAAGGSVTALTGAGMSTDSGIPDYRGPKGSYSRG
HKPMTHDEFLSSEGNRKRYT*
back to top

mRNA from alignment at Ecto-sp8_S_contig106020:51..263-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106020.949.1 ID=mRNA_Ecto-sp8_S_contig106020.949.1|Name=mRNA_Ecto-sp8_S_contig106020.949.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=213bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106020:51..263- (Ectocarpus species8 EcLAC_412)
GCCGTTGAAGATTCGACAACCGCAGTAGAACAACTGCGCGAGCTCCTCGA
TGCTGCGGGCGGGTCGGTGACGGCGCTAACGGGCGCCGGCATGTCGACCG
ACAGCGGCATTCCGGACTACCGCGGCCCCAAGGGGTCGTACTCGCGGGGG
CACAAGCCAATGACGCACGACGAGTTCTTGTCGTCCGAGGGCAACAGAAA
AAGGTACACATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106020:51..263-

>mRNA_Ecto-sp8_S_contig106020.949.1 ID=mRNA_Ecto-sp8_S_contig106020.949.1|Name=mRNA_Ecto-sp8_S_contig106020.949.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106020:51..263- (Ectocarpus species8 EcLAC_412)
GCCGTTGAAGATTCGACAACCGCAGTAGAACAACTGCGCGAGCTCCTCGA
TGCTGCGGGCGGGTCGGTGACGGCGCTAACGGGCGCCGGCATGTCGACCG
ACAGCGGCATTCCGGACTACCGCGGCCCCAAGGGGTCGTACTCGCGGGGG
CACAAGCCAATGACGCACGACGAGTTCTTGTCGTCCGAGGGCAACAGAAA
AAGGTACACATAA
back to top