mRNA_Ecto-sp8_S_contig10599.941.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10599.941.1
Unique NamemRNA_Ecto-sp8_S_contig10599.941.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10599.941.1 vs. uniprot
Match: D7FZ90_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ90_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 4.680e-64
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 2 
Query:  182 KTHTSGTRERRSLGERDMASTSGDAPVGAKVARGRGGAGSRRGSASSGGSAQHDVVDLSTLDNSSAGSDGSDADGASGTEKKKGGGSDTGKHKNGADDAEAKKREQRARANEXXXXXXXXVRAQALAKDTSTNNGDKTTDKL 607
            KTHTSGT+ERRSLGERDMASTSGDAPVGAK ARGRGGAGSRRGSASSGGSA HDVVDLSTLDNSSAGSDGSDADGASGTEKKKGGG DTGKHKNGADDAEAKKREQRARANEXXXXXXXXVRAQALAKDTSTNNGDKTTDKL
Sbjct:  209 KTHTSGTQERRSLGERDMASTSGDAPVGAKAARGRGGAGSRRGSASSGGSAHHDVVDLSTLDNSSAGSDGSDADGASGTEKKKGGGGDTGKHKNGADDAEAKKREQRARANEXXXXXXXXVRAQALAKDTSTNNGDKTTDKL 350
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BLAST of mRNA_Ecto-sp8_S_contig10599.941.1 vs. uniprot
Match: A0A6H5L6S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S8_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.220e-15
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 2 
Query:  419 EKKKGGGSDTGKHKNGADDAEAKKREQRARANEXXXXXXXXVRAQALAKDTSTNNGDKTTDKL 607
            +K+KGGG DTGKHKN ADDAEAKKREQRARAN XXXXXXX VRAQALAKDT+T NGD+TTDKL
Sbjct:  108 QKQKGGGGDTGKHKNAADDAEAKKREQRARANXXXXXXXXEVRAQALAKDTATINGDETTDKL 170
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10599.941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ90_ECTSI4.680e-6497.18Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6H5L6S8_9PHAE7.220e-1585.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10599contigEcto-sp8_S_contig10599:1507..5042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score194.9
Seed ortholog evalue2.2e-47
Seed eggNOG ortholog2880.D7FZ90
Model size608
KEGG koko:K15261
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
EC2.4.2.30
Cds size375
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143157.5720193-UTR-Ecto-sp8_S_contig10599:1506..17381681143157.5720193-UTR-Ecto-sp8_S_contig10599:1506..1738Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10599 1507..1738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143157.5837204-CDS-Ecto-sp8_S_contig10599:1738..19271681143157.5837204-CDS-Ecto-sp8_S_contig10599:1738..1927Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10599 1739..1927 +
1681143157.592841-CDS-Ecto-sp8_S_contig10599:3534..36151681143157.592841-CDS-Ecto-sp8_S_contig10599:3534..3615Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10599 3535..3615 +
1681143157.6018817-CDS-Ecto-sp8_S_contig10599:4409..44651681143157.6018817-CDS-Ecto-sp8_S_contig10599:4409..4465Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10599 4410..4465 +
1681143157.610602-CDS-Ecto-sp8_S_contig10599:4993..50421681143157.610602-CDS-Ecto-sp8_S_contig10599:4993..5042Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10599 4994..5042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10599.941.1prot_Ecto-sp8_S_contig10599.941.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10599 1739..5042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10599.941.1

>prot_Ecto-sp8_S_contig10599.941.1 ID=prot_Ecto-sp8_S_contig10599.941.1|Name=mRNA_Ecto-sp8_S_contig10599.941.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=125bp
MASTSGDAPVGAKVARGRGGAGSRRGSASSGGSAQHDVVDLSTLDNSSAG
SDGSDADGASGTEKKKGGGSDTGKHKNGADDAEAKKREQRARANERKRER
RAEVRAQALAKDTSTNNGDKTTDKL
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mRNA from alignment at Ecto-sp8_S_contig10599:1507..5042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10599.941.1 ID=mRNA_Ecto-sp8_S_contig10599.941.1|Name=mRNA_Ecto-sp8_S_contig10599.941.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3536bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10599:1507..5042+ (Ectocarpus species8 EcLAC_412)
CGCACAAACGCATCGACGCTGCTTGCTGGCACGCCAACAGGATTTTTGCT
TGCTCGTGACACTCTGACCTCTGGCGTTGCTAACGTGGGCCCTGTGGGTG
TGCGGCGTTCCCAGGGAAACGCTCAGCAGGTCCAGCAAGCAACCTTGACG
ATTTTGAAAAATATTTGAACGAATACAACCCAAGACACACACAAGCGGGA
CACGAGAGAGACGTTCGTTGGGGGAGAGAGACATGGCGTCGACTTCCGGC
GATGCTCCTGTCGGCGCCAAGGTTGCTCGTGGTCGAGGGGGGGCGGGATC
TAGGCGAGGGAGCGCTAGCAGCGGCGGCAGCGCTCAGCACGATGTCGTGG
ATCTGTCTACTCTGGATAACAGCAGCGCGGGCTCGGATGGATCTGACGCT
GATGGTGCTTCTGGGACGGAGGTAGGGATAAGGAGAGCGAGAGAACATGT
CGGTGTACTCGTTCTCGCACGCTGGGGGAGAGCACTGCTTGTGTTTGGCG
GCCGGGCTACTGCTCCGATAAAGGGGAGGTGGTGTTGCTGTCTCTGCCCG
TTGTACTTAGCGGCGTGTATATCGGTTTTTGGAATACCCTGAGGAATACT
CTAGGGTCGAATTATGCTTACCCCAGGAGTGATTCGCGTAAATAAGGTTT
GGCGTACACCCTTTTGGCTCGTCTGTTTTGGCGCGTGTGTGGCGTTCGAG
ACGCCGGGTGGCTTGGGAACTCTGGGTGGGAGGAGTGGCTTGCCAGCTGG
GTGGCCTTCATTCACTGCCGTGAGGTGGCCACCTTAGGCTGCGTGTCTAC
AGTAGCTTGGCGCTAGCGAACATGATACCCAACCCTGGTGTATTGCTGCA
ACATCGACTTTTACCCACCCCACCCCTAAGGGTAACGTCGCTTCGTTCAC
CTACATCTGTTTTCCTTATTTTTATTTTTATTTTCCTGGTTTCCGCCCGC
CATGACTCTGCGAGTTAATTCTCGATGCACACTGCACGTTATTCTGTTGC
TTCCCCCCCTGGATTTCAAATCTGCCCATTGTTAGTCGCGGGATACCGAT
CGAAAGCAGAGAGCGTATGTACCCCCAACGCTGTATCTTCGCCAACGGCT
AAGATCCGAGCGCAGCACAGCACGGCACCGCACTACTTGTACTGCTGTAG
CGTAGCACCCGCAAACCAATAATGTCTGTAGCTGTAGAGGACGACGACGT
AAGTTTCGTTTTTGAATTCCGCAATTCGCAACGATACGTCAGCCAGGATC
ACGTTCGAGAAGGTGATTCAACCACTGATGGTCAACGCTGCTGTGTTGTA
ATACATAGTGGACGATTGAGGCACAGGCTTCCTTCCCATTGGCCTACATG
TATGTACATGAGACTTCTGCCGTAGCCTTTGTTTGCCAACGCCCACACGG
ATTGTGCTACCGCCAGTTGGAAGTCCAGGCTACGGCAGCAGAAGGCTAGG
TCTTTCGTTTCTAGCCGTCCTCTTGCGCGGCGCTGCTAAACGCATTTGAT
CTACGCACGGGCCTTGTCGTGTTAGGTAGCAGCTCCTTGCGACTAGCCTA
CCATCGTACTTCAGAACGCCAACACCAGTGTCCAGGAGGCCTCTACTACT
GCTGTAACGTCGGTGCCCTTGCGAGGCCCGATCGCTAATGACAGCCACTG
CTAGTTCACGTTTTTGTTGTTGTGTGGGCGCGCGAGCCGCTCGCGGGAAT
CGGTGTGCCGAACAGGCCCTGCTGGTTGCTTCTGTCGCTGTCGCACCGGA
ATAGATACAAGGGGCGCTTGCGGTTGCAAATGCGTTTCACATTTTGATCC
CCGTGTTGGCGAGTGGTAGCAACCCACCGAGCCTCCGGCGCCCTAGCCGC
AGCAACTCCGGCCAGATAGCGTACAACCGTACTGTTATTAGTGTAAAGCT
TCCTTCGCTTCCCATTTGGATGACTGCAAGCGCCCTTGGCCCAGATCCCT
ACCCCCGCCGCCCCTCTCGCTTGCTGTCTGTCCGCGGTTGTTGCTTCCGG
TTGTCCACCGTTCCTGGTTCGTTTTCAGAAGAAAAAAGGCGGCGGAAGTG
ATACGGGGAAACACAAAAACGGTGCCGATGATGCTGAGGCAAAGAAACGA
GAGCAGAGGGTGAGTGGTGCCCTGCCAGATGCTTGCCAGTAGTTATCCTT
TTCGGTTGGTTTTGTTGCCACGCTACCGAACTTGTTCGTCTCTGCCGTTG
TGTTGTTGCTGCTTCGGTTTTTCGTGCCCACCCCCGTTGGGAGGACCGGC
CTCCTCATCGTGCAGCGATAAGAAGCCGACAGCTACGATGCGTCTGGTTT
CGCTGGGTTGTCGAAACGCGGTCGATGAAATCACACCCATCGGCGGTGGT
GGAACCCATGTCTATCGACACTTTTTCTTTGCCGGAACACGTCGTGCCTC
GGCCTTGCGTAGAGTTGGGGATTCGGCTAAGATGTGGAAAGTGTGGCGCG
TTTCGGTGGAAACATGGGCAAGTGCATAGGGCCATTGCCAGACGGCCGAG
AGACAGAGCAGGGAGAGATCCCAAGCGGGTGTCGCGGCATGCGCTACGCA
TAGAAGCTGCCTCAGTGATCATGATGACTCACTGAAGCGCTGTCTGTTTT
GGTTGCACTGAGACTGCAGTATTTTGATCGGCCAGGCGGTCGGTGCGGTC
GGTACTATAATAGGAATCAAGACACACGGAGACACTTTTCTGTTGTCCAA
TTCCTGCGCCCCCCCTGTGGGTAGAACGTTTTGACTGGGACGAGTGTTCC
CCGCTATCATACGACTGCTGTTGTATACATATATATTATAGTGTCAGTGG
TGAGCCGGCTAGCTCGGCCGATACTACCGCAAGAAGCACACCCACCCACC
CACCGATTTTGTAATTCCCCCTGACTCCTCTATCTCTACTGATGTCCATT
CAGGCAAGGGCGAATGAGCGCAAGAGGGAGAGACGAGCGGAAGTCAGGGC
TCAAGCCTTGTGAGTCTCGTATGCATTTAATTGTGGTGGTTCTTAGTTGG
TGCAAAAGTAAGGCGCCTGCCACTGCCATCGTTGCTGTCATGCGGGCCCG
CGTGTAGGAATAGCAACGTGTGTGACGACGCGCATCTCGTCTACGGTAAG
TTTTGCCTAGCGGCGCCAACAACATCAGCCGGACTTTTGTGTGATGTCGC
GGTTGTGTACCTTGGACCAGGAGACTCACCAGGAGACAGTGAGTGCATGG
AGAGAAAAAGAGTGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGGAGGGCGACGGCTATTCACGTTCGTTTGTTTTATGTGGGCAACTCC
AGCACCAGCAGCATCAGCAATGGCAGTAGAAAGAAAAACACCATTTGTGA
CGCGAAGTACGGCAGCATTTGTGCGGCTTCCGTGTCGAGTGCCATCGGGG
CGCGTCCAGCGGCTCATCTCCCACCCCCCCGACCCCCCCCGCCGCACCAA
CTCACACTGCCGCTTACCACCACCACCACCACCACAGGGCCAAGGATACT
TCCACCAACAACGGCGACAAGACCACGGACAAGCTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10599:1507..5042+

>mRNA_Ecto-sp8_S_contig10599.941.1 ID=mRNA_Ecto-sp8_S_contig10599.941.1|Name=mRNA_Ecto-sp8_S_contig10599.941.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10599:1507..5042+ (Ectocarpus species8 EcLAC_412)
ATGGCGTCGACTTCCGGCGATGCTCCTGTCGGCGCCAAGGTTGCTCGTGG
TCGAGGGGGGGCGGGATCTAGGCGAGGGAGCGCTAGCAGCGGCGGCAGCG
CTCAGCACGATGTCGTGGATCTGTCTACTCTGGATAACAGCAGCGCGGGC
TCGGATGGATCTGACGCTGATGGTGCTTCTGGGACGGAGAAGAAAAAAGG
CGGCGGAAGTGATACGGGGAAACACAAAAACGGTGCCGATGATGCTGAGG
CAAAGAAACGAGAGCAGAGGGCAAGGGCGAATGAGCGCAAGAGGGAGAGA
CGAGCGGAAGTCAGGGCTCAAGCCTTGGCCAAGGATACTTCCACCAACAA
CGGCGACAAGACCACGGACAAGCTT
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