mRNA_Ecto-sp8_S_contig10597.938.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10597.938.1
Unique NamemRNA_Ecto-sp8_S_contig10597.938.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10597.938.1 vs. uniprot
Match: D8LE82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE82_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.570e-7
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 LRLEAVRLERRSGNSKGVDSLMTKAL 78
            +RLEAVRLERRSGNSKGVDSLMTKAL
Sbjct:    1 MRLEAVRLERRSGNSKGVDSLMTKAL 26
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10597.938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE82_ECTSI4.570e-796.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10597contigEcto-sp8_S_contig10597:2901..3045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size145
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001260.1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143157.4470823-CDS-Ecto-sp8_S_contig10597:2900..30441681143157.4470823-CDS-Ecto-sp8_S_contig10597:2900..3044Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10597 2901..3044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10597.938.1prot_Ecto-sp8_S_contig10597.938.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10597 2901..3044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10597.938.1

>prot_Ecto-sp8_S_contig10597.938.1 ID=prot_Ecto-sp8_S_contig10597.938.1|Name=mRNA_Ecto-sp8_S_contig10597.938.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
LRLEAVRLERRSGNSKGVDSLMTKALAGVSRVRRALGGGDPGGTTVRA
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mRNA from alignment at Ecto-sp8_S_contig10597:2901..3045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10597.938.1 ID=mRNA_Ecto-sp8_S_contig10597.938.1|Name=mRNA_Ecto-sp8_S_contig10597.938.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=145bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10597:2901..3045+ (Ectocarpus species8 EcLAC_412)
CTGCGGTTGGAGGCGGTGCGTCTTGAGAGGCGATCAGGGAACAGCAAGGG
TGTGGATAGCCTCATGACCAAGGCCCTTGCAGGAGTGTCCCGGGTCCGGC
GTGCTTTGGGCGGAGGAGACCCTGGCGGCACAACGGTCCGAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10597:2901..3045+

>mRNA_Ecto-sp8_S_contig10597.938.1 ID=mRNA_Ecto-sp8_S_contig10597.938.1|Name=mRNA_Ecto-sp8_S_contig10597.938.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10597:2901..3045+ (Ectocarpus species8 EcLAC_412)
CTGCGGTTGGAGGCGGTGCGTCTTGAGAGGCGATCAGGGAACAGCAAGGG
TGTGGATAGCCTCATGACCAAGGCCCTTGCAGGAGTGTCCCGGGTCCGGC
GTGCTTTGGGCGGAGGAGACCCTGGCGGCACAACGGTCCGAGCA
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