mRNA_Ecto-sp8_S_contig1059.925.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1059.925.1
Unique NamemRNA_Ecto-sp8_S_contig1059.925.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1059.925.1 vs. uniprot
Match: D8LGR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR7_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.720e-57
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 3 
Query:  237 MSSELRQKAYTRRASQHDDLEESRSLHEQFRSSMFSASKADRLNARTTISGGAGGAGSSCDSSESTTAARIDAAIKAAMAHDATRGANTFNRLNLTPEGSAASLGGPDR 563
            MSSELRQKAYTRRASQHDDLEESRSLHEQFRSSMFSASKADRLNARTTISGGAGGAGSSCDSSESTTAARIDAAIKAAMAHDATRGANTFNRLNLTPEGSAASLGGP R
Sbjct:    1 MSSELRQKAYTRRASQHDDLEESRSLHEQFRSSMFSASKADRLNARTTISGGAGGAGSSCDSSESTTAARIDAAIKAAMAHDATRGANTFNRLNLTPEGSAASLGGPGR 109
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BLAST of mRNA_Ecto-sp8_S_contig1059.925.1 vs. uniprot
Match: A0A6H5J9D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9D1_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.080e-42
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 3 
Query:  237 MSSELRQKAYTRRASQHDDLEESRSLHEQFRSSMFSASKADRLNARTTISGGAGGAGSSCDSSESTT-AARIDAAIKAAMAHDATRGANTFNRLNLTPEGSAASLGGP 557
            MSSELRQK YTRRAS+HDDLEESR+LHEQFRSSMFSAS+AD LN RTTIS G GGA   CDSSES+T AARIDAAIKAAMA+DA RGA TFN LNLTPEGSAASLGGP
Sbjct:    1 MSSELRQKTYTRRASRHDDLEESRTLHEQFRSSMFSASRADPLNPRTTISAGPGGADRYCDSSESSTSAARIDAAIKAAMANDANRGATTFNHLNLTPEGSAASLGGP 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1059.925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGR7_ECTSI2.720e-5799.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9D1_9PHAE2.080e-4284.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1059contigEcto-sp8_S_contig1059:12309..16527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size563
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143156.8080015-UTR-Ecto-sp8_S_contig1059:12308..125441681143156.8080015-UTR-Ecto-sp8_S_contig1059:12308..12544Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1059 12309..12544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143156.8173463-CDS-Ecto-sp8_S_contig1059:12544..126071681143156.8173463-CDS-Ecto-sp8_S_contig1059:12544..12607Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1059 12545..12607 +
1681143156.838603-CDS-Ecto-sp8_S_contig1059:16263..165271681143156.838603-CDS-Ecto-sp8_S_contig1059:16263..16527Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1059 16264..16527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1059.925.1prot_Ecto-sp8_S_contig1059.925.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1059 12545..16527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1059.925.1

>prot_Ecto-sp8_S_contig1059.925.1 ID=prot_Ecto-sp8_S_contig1059.925.1|Name=mRNA_Ecto-sp8_S_contig1059.925.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=109bp
MSSELRQKAYTRRASQHDDLEESRSLHEQFRSSMFSASKADRLNARTTIS
GGAGGAGSSCDSSESTTAARIDAAIKAAMAHDATRGANTFNRLNLTPEGS
AASLGGPDR
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mRNA from alignment at Ecto-sp8_S_contig1059:12309..16527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1059.925.1 ID=mRNA_Ecto-sp8_S_contig1059.925.1|Name=mRNA_Ecto-sp8_S_contig1059.925.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4219bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1059:12309..16527+ (Ectocarpus species8 EcLAC_412)
GAGGTGCGATGCAGGAGGCGGCAACATCTTGTGTTGTGGCGCGAGAGAGC
ACGCTGGTCCTCTTGCTGATATTATAAGATTTAAAAGGAGAGCAGCGACA
GCAAGCTGGGGGGGGGGCTCTGATTGGGCGACGGGCGTACCAGAGCCACG
GTGTTTCTACCAGAGGACGGAACGGAAGTAGGAGCGATATTTGGTGACTG
GTGAAACACCTGCTTGGTGCTTTTAGGGGGTAGAAGATGTCGTCCGAGCT
GCGGCAGAAGGCCTACACACGGCGAGCGTCGCAGCACGACGACCTGGAGG
TGAGAGGAGGGAGGGGCAGAGAAAAACGTGCCGCCTTTTCTGTGTTCGTT
GCTCGGAGCGTGTTGAATCGCTGCCTGCTGCTGGGGTGTAGCCCGAGGTC
TTGCGTGTTATTCCGAGTGTGTCCTCGTCTCCTCTTTTGTATCCGGCAGC
TCTCTCTGTTGTCAGCAGCAGCGAGCACCGCTTTTTGGAGTCTATCGTCC
CGGCGCTACTCAGCAGCCCCTTTTATTCCTACGGAATTCAATTCCATCTG
CTACAGCAACAGCAGCAGCAGCAGCACACCCGCATACCTAGAATCGTATT
GTTTGTAACCCCCCCCCTGTTGCAGCCGCAGCCGCTGTGCGCGATGTGTC
TGCTTCGGCTTTGAGCTCTGGTTCGGCGGCGGTCCGCCGAATCAGTATGA
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGATCTACC
GTATTTTTGCCAGACTAATAGTGGGTGTAGCGTTGTTGGCGTGTAGTCTA
AGCGAATCGGCCGCTGCTGGCCGTGTTGTAGACAAGAAACCATACGCACG
CCAGCTTTCCCCCCTCTTTCCCTGCACGCACCGTCGTGTGATGCATGCCA
CTTGCGCCGCGCAGGCGCTCCTCAATAAAAGCCTTTTTCGGGGCGAATCG
GACGGGTGCATACACAATAACACACATGACAGACACACAAATATGCTCCC
TATGCATATATATGTGTGCATAGTCTATTGAACCCCCTCCACGCATGGGA
TCTGTACTTAGGATAAGTATCGTAGAAACCTGTTGACGGATCTTCTTTGA
CCTGCTCATAGTGGTCGTTGTTGTGGCACCTTGCAGATGCTGCTCTCATG
CTCTCATCCCTTCGGCTAGCGCGCTCGCTGTTTGTTTTTTCGGTTCCATG
CGTGTGTACCCACATGCACTGCTGTACCTACCTGCAGCATGTTGTTGCGC
TCACGCGCTTCCCCTGCTTTCCGATGTGGAACGCCAGCCTGGACGTGCTC
TTCCCACCCACCCGCCCACCACGCCCCCATTTTTCTAATGATTTGTGCGT
TTGAACTTCTCCAACCGTGTGCACACTGGCGGCCGACCCGTTCGACACAG
CGGCCTGCCTGCGACGTAGTTGTGTGTGTGTTGTTTGAGAACATACATAC
CCTCACGGAAGACTACAACGCAGTACCCTTTCGAGATGCGGAGTATACCA
CCACAGCAGTCAAAGGGATGTGCTGAAAGAAGTATTTACAGCAGTGAAAA
TACTTCTTTCTATTCAGTGTTTGAGGCTTGAAAGCCAGGTGCAACTTCCA
CTTACTCTTTCAACCGCAACAACCAACCGCGCCGAGAGGCATTACCTTTG
ACTCGGAAGAACCTTCATACGTTATGCGTTCAATACTCGCGTTCAATGTG
TGCCGTGCGAATCGGGGCGGCCACACACACACCCGCACCGCATTCAAGCT
TCTGCTACTTGAACACACTGCTGTGTGTGGTCGAACGCCTGCTGTCGGCA
GAGAGAGGGAGAGGTGTGGCAGCAAGGAAACTAACTTGTGTGTGTGGCTC
GGGGAGATAAACCGAGTGACCAATGAACCATACAATAACAAATATGCTTT
GGAAGACGTGCTGGTTGGCGCTTTTGATCCTGCTATTTAATAATTCTATT
AAACACAAGGGCGATCGAAGGCGACGATCGACGGAGCGACGGCGGCGAAA
CCGATCGACCGCCCGACCGACCGAACGACCCAATTAAACACAAGTGTCTT
TTTTCAGCTGTCAGATGGATAGCACGGTCGATGAAAATAGCTGAGGCACA
CACACGTGGTACATGTATGTATCTCGGAGCAACACGGATGAAGTATGCCC
CACCGCCGAACAAACAACGTGCTCGCAGAAAGCGGAGTATTCCCGTCTGT
GACAAAAATCTGTGACAGAACAGCCCCCCCCCCCCCGTGTGGTGGTCGTG
TTGTACAGCAGTATCGTCAAAGCCTGATTTCTTCACGTTGTACATATATA
TATATATATATGTGCATGTGCATACATACAATGGTTCAAAGAAGCGGAGT
ATTTCCTTGTGATGCAACGCAGGTACTCCGTGTTCCACAGAAGTTTTTGG
GCGCTTCGGAACGTCGCCTCTGCTGCACGTGTTTTTTTTTCTCTCAAGGT
TGTAGACTTTTCATGTACATGCATGCATATGCATGTATGTCGATGAAGGG
CTCGTCATCCTATGCGTGGGTGCTGTTGAAGGCCTTGGGTTGGATTCCTG
CAGCCAAGTGTGGCCAGTATTTCGGCTTCGCGCAAACCGCGATGGTTTTT
CCTTGCGACAGAGTAAATTCGGTTTCGACCGCCGTATTCCGAATCCAACC
CCCCCCCATCGTCAGTGCCTGGTATTGTTTGTTTAGGAAAACTACAAGCA
AACAAGAGAACGGCTACCCGTTTTAGATGTAAGTAGCCGCAGCCGAAAGG
GATGGGTTAAATGAAGTCTTTTCAGAGAACACTTGTGTTTTGGATGATGA
ACCCTGGCAAGGAAGAGAAGCCTCTTCGCTGTGTCGGAGGATTGGCACTT
AGCACCCCCGCTCTCCCGCCGCCCCCGGGTGGTGCTGGTGCTGCGACGAT
ACATGTGTATGTGTTTTTATTATAGCATCGACCGCGCTAACCGGCTGACC
AATGAGAAGACGTCAGTCTTAGTGCGGTTAAAAACACAAAACACTTCTAT
CTGCCATGAACTGGGACCCCGTGAGGGGGCAGCATGTGTGTGTGTGCGTG
TGTGTGTGCGCGTGTGTGTGTGTGCGTGCATGGCGAGAGAATTTTGGGAA
GCGATAACGCGTGTTTCCCGCGCGCCCCTCCGCTAGCTGTAGACCAACAC
CCCCGCACGTGGAGGAAAGGTGCCGTCAGAACATACAGCGCGAGTCTTGC
GGTCAGAAAGAACTACGTTGGACGAAACACCTGCTGCTGCAGCTATTCCC
TGGTTGTCCACCCATCCCTCTCTTTCTCGATCTCTCTTGTCTATCTCTTT
CGACTGGCCTGCGAGACTCATCGAATACCGTCAGACTTATCGAATACCGC
AAGAGGCGGAGAGATGGCACCCCCACCGTAGACCGATTTTCAAGGCTGAT
TTCTCCACACCCCAGATTGTGCCACCACCAAAAAATATGGCTTTCGAAAC
ATCTCGTTGAGGGCTCTCCGTAGACGTATCGGACTCTTTCCGCACCCCCC
TTGGCTGTGGAGAAATCGAGGTTTGAAAGTCGGTCTGGGTGGGATGCCAT
CTCTCTGCCTCTTACGGAATAGCACGGTACGGTGTATGGTACGGTACAGA
CAATCTTGACTGTGGAGAAATCGAGGTTTGAAAGGCGGTCTAGGGGGAGT
ATACCATTTCTCTGCCTCTTACGGTAGTGCTTTTAAAGAGGACCAGCAGC
GGGTACGAAACACCGTCAGGCACCACATGGTACGGAGGTTGTGTTATGTG
TGAGTACTGCCTGTATGCACAACGCGCAGCAGGGGATGGAAGCGGTGCTG
AGCCAAGCGTAATCTCCCTTCTTTCCAGAATGCGTTTCCGCCTGTGTCAC
GGCCCAATCCCAACCCCCGTCCCCGGTTTCCACCTATATAACGGCGGTCG
CATCACCCTAATCCCAACCCCCTCCCCGCCCCCCGGGTCGTTGCTGTCCC
GTCAGGAATCACGCTCGCTGCACGAGCAGTTCCGGTCGTCCATGTTCTCG
GCCAGCAAGGCCGACCGCCTCAACGCGCGAACCACCATTTCGGGGGGGGC
CGGCGGGGCCGGCAGCTCCTGCGACTCGTCTGAGAGCACCACGGCCGCCC
GCATCGACGCGGCCATCAAGGCCGCCATGGCCCACGACGCCACCAGAGGC
GCCAACACCTTCAACCGCCTCAACCTGACCCCGGAAGGGAGCGCGGCGAG
CCTCGGGGGCCCAGACCGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1059:12309..16527+

>mRNA_Ecto-sp8_S_contig1059.925.1 ID=mRNA_Ecto-sp8_S_contig1059.925.1|Name=mRNA_Ecto-sp8_S_contig1059.925.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1059:12309..16527+ (Ectocarpus species8 EcLAC_412)
ATGTCGTCCGAGCTGCGGCAGAAGGCCTACACACGGCGAGCGTCGCAGCA
CGACGACCTGGAGGAATCACGCTCGCTGCACGAGCAGTTCCGGTCGTCCA
TGTTCTCGGCCAGCAAGGCCGACCGCCTCAACGCGCGAACCACCATTTCG
GGGGGGGCCGGCGGGGCCGGCAGCTCCTGCGACTCGTCTGAGAGCACCAC
GGCCGCCCGCATCGACGCGGCCATCAAGGCCGCCATGGCCCACGACGCCA
CCAGAGGCGCCAACACCTTCAACCGCCTCAACCTGACCCCGGAAGGGAGC
GCGGCGAGCCTCGGGGGCCCAGACCGG
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