mRNA_Ecto-sp8_S_contig105764.906.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig105764.906.1
Unique NamemRNA_Ecto-sp8_S_contig105764.906.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Match: D8LJP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP2_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 8.900e-29
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLA 159
            GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLA
Sbjct:    8 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLA 60
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BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Match: A0A835YVB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVB1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.200e-23
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLA 159
            GGVLAGGLHA+SGPDHLAALLPRIMG+ W  +MRIGA WGLGHGFSAT+IGLA
Sbjct:    3 GGVLAGGLHAISGPDHLAALLPRIMGKAWPVAMRIGAVWGLGHGFSATLIGLA 55
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BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Match: A0A7S1D180_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D180_CYCTE)

HSP 1 Score: 87.4 bits (215), Expect = 9.990e-20
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGL 156
            GG  AGGLHA+SGPDHLAALLPR +GQ+W+KS R+GA WG+GHG SAT++G+
Sbjct:   98 GGFAAGGLHAISGPDHLAALLPRCVGQRWYKSFRVGALWGMGHGVSATILGV 149
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BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Match: A0A1Z5K7J2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7J2_FISSO)

HSP 1 Score: 86.7 bits (213), Expect = 3.950e-19
Identity = 36/52 (69.23%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGL 156
            GG+ AGGLHA++GPDHLAALLPR  GQ+W++++R+GA WG+GHG SATV+GL
Sbjct:   72 GGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAVRVGALWGMGHGLSATVLGL 123
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BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Match: A0A4D9DEM4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEM4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.210e-18
Identity = 36/52 (69.23%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGL 156
            GG+LAG LHAV+GPDHLAALLPR +G++W+++MRIGA WGLGHG SA ++G+
Sbjct:   15 GGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGM 66
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BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Match: B7G7I3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7I3_PHATC)

HSP 1 Score: 85.5 bits (210), Expect = 1.260e-18
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLA 159
            GG+ AGGLHA++GPDHLAALLPR  GQ+W+++ R+GA WG+GHG SAT+IG+A
Sbjct:   87 GGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRVGALWGMGHGVSATIIGVA 139
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BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Match: A0A7S2BWD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BWD9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.540e-18
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLA 159
            GG LAG LHAVSGPDH+AA+LPR +GQKW ++  IGATW  GHG SAT +GLA
Sbjct:   70 GGTLAGALHAVSGPDHIAAVLPRCIGQKWWRASEIGATWAFGHGLSATFLGLA 122
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BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Match: A0A7S3Q4K0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q4K0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.170e-18
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGL 156
            GGVL G LHA++GPDHLAALLPR  GQ+W+++ RIGA WG+GHG SAT++GL
Sbjct:   84 GGVLGGALHAIAGPDHLAALLPRCCGQRWYQAGRIGALWGMGHGVSATILGL 135
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BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Match: A0A7S4J5D2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5D2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.400e-18
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGL 156
            GGV AGGLHA++GPDHLAALLPR  GQ+W+++ RIGA WG+GHG SAT++G+
Sbjct:   87 GGVFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRIGALWGMGHGVSATILGV 138
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Match: A0A7R9ZBQ6_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBQ6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.490e-18
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGL 156
            GGV AGGLHA++GPDHLAALLPR  GQ+W+++ RIGA WG+GHG SAT++G+
Sbjct:   90 GGVFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRIGALWGMGHGVSATILGV 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105764.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJP2_ECTSI8.900e-29100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVB1_9STRA5.200e-2384.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1D180_CYCTE9.990e-2071.15Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A1Z5K7J2_FISSO3.950e-1969.23Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A4D9DEM4_9STRA1.210e-1869.23Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B7G7I3_PHATC1.260e-1867.92Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2BWD9_9STRA1.540e-1869.81Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3Q4K0_9STRA2.170e-1869.23Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4J5D2_9STRA2.400e-1869.23Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7R9ZBQ6_9STRA2.490e-1869.23Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig105764contigEcto-sp8_S_contig105764:10..168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score110.9
Seed ortholog evalue1.8e-22
Seed eggNOG ortholog2880.D8LJP2
Preferred nameNIK1
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs28N5Y@1,2QUR7@2759
Cds size159
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.6874146-CDS-Ecto-sp8_S_contig105764:9..1681681143155.6874146-CDS-Ecto-sp8_S_contig105764:9..168Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105764 10..168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig105764.906.1prot_Ecto-sp8_S_contig105764.906.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig105764 10..168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig105764.906.1

>prot_Ecto-sp8_S_contig105764.906.1 ID=prot_Ecto-sp8_S_contig105764.906.1|Name=mRNA_Ecto-sp8_S_contig105764.906.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=53bp
GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVI
GLA
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mRNA from alignment at Ecto-sp8_S_contig105764:10..168-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig105764.906.1 ID=mRNA_Ecto-sp8_S_contig105764.906.1|Name=mRNA_Ecto-sp8_S_contig105764.906.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105764:10..168- (Ectocarpus species8 EcLAC_412)
GGGGGGGTGCTAGCGGGGGGCCTGCACGCGGTGTCTGGACCCGACCACCT
AGCCGCGCTGCTGCCGCGCATCATGGGGCAGAAGTGGCACAAGTCGATGA
GAATCGGGGCCACGTGGGGACTCGGCCACGGCTTCAGCGCCACGGTCATC
GGACTTGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105764:10..168-

>mRNA_Ecto-sp8_S_contig105764.906.1 ID=mRNA_Ecto-sp8_S_contig105764.906.1|Name=mRNA_Ecto-sp8_S_contig105764.906.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105764:10..168- (Ectocarpus species8 EcLAC_412)
GGGGGGGTGCTAGCGGGGGGCCTGCACGCGGTGTCTGGACCCGACCACCT
AGCCGCGCTGCTGCCGCGCATCATGGGGCAGAAGTGGCACAAGTCGATGA
GAATCGGGGCCACGTGGGGACTCGGCCACGGCTTCAGCGCCACGGTCATC
GGACTTGCG
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