mRNA_Ecto-sp8_S_contig105761.905.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig105761.905.1
Unique NamemRNA_Ecto-sp8_S_contig105761.905.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Match: D7FYH7_ECTSI (Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH7_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.240e-34
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 1
Query:    1 DELARYDTPAMIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVRANHLS 198
            DELARYDTP MIDHVLKVSGQ QLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVRANHLS
Sbjct:  134 DELARYDTPTMIDHVLKVSGQTQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVRANHLS 199          
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Match: A0A836CJG0_9STRA (Lipase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG0_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.570e-17
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 DELARYDTPAMIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVRANHLS 198
            DELARYD PA++  VL V+  P+L Y+GFSQG+AQ FAA S+D  LQA+V LF ALSPA RA  LS
Sbjct:  107 DELARYDVPALVGAVLGVTRAPRLAYVGFSQGSAQMFAALSADTALQARVALFAALSPAARAKGLS 172          
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Match: A0A4D9CWT9_9STRA (AB hydrolase-1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWT9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.780e-16
Identity = 39/66 (59.09%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 DELARYDTPAMIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVRANHLS 198
            DELAR+D PAM+D+VL+ +GQ +L Y+GFSQG+AQAFAAF++D  +  KV LF+AL+   RA  LS
Sbjct:  283 DELARFDVPAMVDYVLRATGQEKLAYVGFSQGSAQAFAAFTTDLAMAKKVSLFLALAAPPRAKGLS 348          
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Match: W7TN68_9STRA (Sterol esterase tgl1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN68_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.230e-16
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 DELARYDTPAMIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVRANHLS 198
            DELAR+D PAM+D+VL+ +GQ +L Y+GFSQG+AQAFAAF++D  +  KV +F+AL+   RA  LS
Sbjct:  317 DELARFDVPAMVDYVLRATGQEKLAYVGFSQGSAQAFAAFTTDLAMAKKVSIFLALAAPPRAKGLS 382          
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Match: UPI0009E4567E (lipase member K-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4567E)

HSP 1 Score: 79.0 bits (193), Expect = 1.120e-15
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    4 ELARYDTPAMIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVRANH 192
            E+A+YD PAM++HVLKVSGQ QL YIG SQGT   F  FS++P+L  KV LF+AL+P    NH
Sbjct:  151 EMAQYDIPAMLEHVLKVSGQTQLFYIGHSQGTLIGFTEFSANPELAKKVKLFIALAPIFYLNH 213          
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Match: A0A4P9XV27_9FUNG (Triacylglycerol lipase (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XV27_9FUNG)

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-15
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 DELARYDTPAMIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVR 183
            DELA YD P  +D++L  +GQP L YIGFSQGTAQAFA+ S++ DL  K+ LFVAL+PA +
Sbjct:  185 DELAAYDLPNTVDYILHETGQPNLAYIGFSQGTAQAFASLSTNRDLNNKISLFVALAPATK 245          
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Match: A0A4P9Y7M6_9FUNG (Sterol esterase-like protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y7M6_9FUNG)

HSP 1 Score: 77.0 bits (188), Expect = 6.160e-15
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 DELARYDTPAMIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVR 183
            DELARYD P  ID+VL+++GQ  L YIGFSQGTAQ FAA S +P+L  KV  F+AL+PA +
Sbjct:  194 DELARYDIPNTIDYVLRMTGQSTLSYIGFSQGTAQMFAALSINPELNDKVNSFIALAPATK 254          
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Match: A0A0D2WV81_CAPO3 (Triacylglycerol lipase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WV81_CAPO3)

HSP 1 Score: 76.6 bits (187), Expect = 8.570e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 DELARYDTPAMIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVRANHL 195
            DELA YD PA ++++L ++ Q  L Y+GFSQGTAQAFA+FS +P L A+V +FVAL+PA RA  L
Sbjct:  193 DELALYDVPANLNYILDLTQQKTLSYVGFSQGTAQAFASFSLNPQLAARVNMFVALAPAGRAKGL 257          
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Match: A0A139AD30_GONPJ (Alpha/beta-hydrolase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AD30_GONPJ)

HSP 1 Score: 76.3 bits (186), Expect = 1.020e-14
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 DELARYDTPAMIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAVRANHLS 198
            DE+ ++D PA +DH+LKV+   +L Y+GFSQGTAQAFA+ S +P L +KV +F AL+PA +   LS
Sbjct:  244 DEIVQFDVPATVDHILKVTKAEKLSYVGFSQGTAQAFASLSLNPTLNSKVHVFCALAPAAQPEGLS 309          
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Match: K5WZ02_AGABU (AB hydrolase-1 domain-containing protein n=3 Tax=Agaricus bisporus TaxID=5341 RepID=K5WZ02_AGABU)

HSP 1 Score: 75.9 bits (185), Expect = 1.570e-14
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    1 DELARYDTPAMIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAV 180
            D+ A +D P  I+H+L+V+G PQL Y+GFSQGTAQAFAA S  P L AK+ +F+AL+PA+
Sbjct:  191 DDFAWHDIPDTINHILQVTGAPQLSYLGFSQGTAQAFAALSVQPQLNAKINVFIALAPAM 250          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105761.905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYH7_ECTSI2.240e-3496.97Lipase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A836CJG0_9STRA4.570e-1763.64Lipase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A4D9CWT9_9STRA3.780e-1659.09AB hydrolase-1 domain-containing protein n=2 Tax=M... [more]
W7TN68_9STRA6.230e-1657.58Sterol esterase tgl1 (Fragment) n=1 Tax=Nannochlor... [more]
UPI0009E4567E1.120e-1560.32lipase member K-like n=1 Tax=Orbicella faveolata T... [more]
A0A4P9XV27_9FUNG2.300e-1560.66Triacylglycerol lipase (Fragment) n=1 Tax=Thamnoce... [more]
A0A4P9Y7M6_9FUNG6.160e-1562.30Sterol esterase-like protein n=1 Tax=Piptocephalis... [more]
A0A0D2WV81_CAPO38.570e-1558.46Triacylglycerol lipase n=2 Tax=Capsaspora owczarza... [more]
A0A139AD30_GONPJ1.020e-1453.03Alpha/beta-hydrolase n=1 Tax=Gonapodya prolifera (... [more]
K5WZ02_AGABU1.570e-1458.33AB hydrolase-1 domain-containing protein n=3 Tax=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig105761contigEcto-sp8_S_contig105761:3..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score112.1
Seed ortholog evalue8.6e-23
Seed eggNOG ortholog2880.D7FYH7
Preferred nameTGL1
Model size198
KEGG rclassRC00055,RC00523
KEGG koko:K01052
KEGG ReactionR01462
KEGG Pathwayko00100,ko04142,ko04979,map00100,map04142,map04979
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004771,GO:0005575,GO:0005622,GO:0005623,GO:0005811,GO:0006066,GO:0006629,GO:0006694,GO:0006696,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008610,GO:0009058,GO:0009987,GO:0016020,GO:0016021,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044425,GO:0044464,GO:0046165,GO:0052689,GO:0071704,GO:0097384,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
Exons2
EggNOG free text desc.hydrolase activity, acting on ester bonds
EggNOG OGsCOG0596@1,KOG2624@2759
EC3.1.1.13
Cds size168
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.6297042-CDS-Ecto-sp8_S_contig105761:2..1411681143155.6297042-CDS-Ecto-sp8_S_contig105761:2..141Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105761 3..141 -
1681143155.6434464-CDS-Ecto-sp8_S_contig105761:452..4811681143155.6434464-CDS-Ecto-sp8_S_contig105761:452..481Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105761 453..481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.6533883-UTR-Ecto-sp8_S_contig105761:481..5111681143155.6533883-UTR-Ecto-sp8_S_contig105761:481..511Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig105761 482..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig105761.905.1prot_Ecto-sp8_S_contig105761.905.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig105761 3..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig105761.905.1

>prot_Ecto-sp8_S_contig105761.905.1 ID=prot_Ecto-sp8_S_contig105761.905.1|Name=mRNA_Ecto-sp8_S_contig105761.905.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=56bp
MIDHVLKVSGQPQLCYIGFSQGTAQAFAAFSSDPDLQAKVFLFVALSPAV
RANHLS
back to top

mRNA from alignment at Ecto-sp8_S_contig105761:3..511-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig105761.905.1 ID=mRNA_Ecto-sp8_S_contig105761.905.1|Name=mRNA_Ecto-sp8_S_contig105761.905.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=509bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105761:3..511- (Ectocarpus species8 EcLAC_412)
GACGAGCTGGCGCGGTACGACACGCCGGCCATGATCGATCACGTCCTCAA GGTTTCGGGGTGAGGAGTCTCGAAACTGGCGACGCGGTACTTTTACACCC GCGCGTTCATATTGATAATGTAGCTTTGTCGCAACAGCTCTTGAATTGTT TGGTGATGGCGGTGGTGGCACAACGCAGGAGAGTATTTTGGTGTCGGTTA GAAGCGTACCGAAATTTGTTTTTTTTTTCGGTAGCAACGATCGTGGTGTG GGTGCGACGTACCACGTACCACGGTACCGCCGGTATCGAACCTCCTGGGA CGGAAGGCTGCTCTTCCTCTCCGACTCGTTCCCTCTCGGCCTGCTCGCGT CACCGCGTGGACCCACGCAGACAACCCCAGTTGTGCTACATCGGGTTTTC CCAGGGCACGGCGCAGGCGTTCGCGGCCTTTTCAAGCGACCCCGACCTCC AGGCGAAGGTGTTCCTCTTCGTCGCGCTTTCTCCCGCCGTCCGCGCGAAC CACTTGTCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105761:3..511-

>mRNA_Ecto-sp8_S_contig105761.905.1 ID=mRNA_Ecto-sp8_S_contig105761.905.1|Name=mRNA_Ecto-sp8_S_contig105761.905.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105761:3..511- (Ectocarpus species8 EcLAC_412)
ATGATCGATCACGTCCTCAAGGTTTCGGGACAACCCCAGTTGTGCTACAT
CGGGTTTTCCCAGGGCACGGCGCAGGCGTTCGCGGCCTTTTCAAGCGACC
CCGACCTCCAGGCGAAGGTGTTCCTCTTCGTCGCGCTTTCTCCCGCCGTC
CGCGCGAACCACTTGTCC
back to top