mRNA_Ecto-sp8_S_contig105753.904.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig105753.904.1
Unique NamemRNA_Ecto-sp8_S_contig105753.904.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Match: UPI000C78AAE5 (trypsin-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78AAE5)

HSP 1 Score: 151 bits (381), Expect = 2.010e-42
Identity = 77/129 (59.69%), Postives = 98/129 (75.97%), Query Frame = 1
Query:   55 CRCGQANTKVKIVGGAATEENEYPWQVGLLSSQ---SSSTPFCGGTLVSNKEVLTAAHCTSGSTAAYVLLGEHDLRRA-DGEKKIRVCGTTNNPNYNSRTVDYDFSILTLCEE-VDFTTDISPACLPTS 426
            C+CGQAN K KIVGG  TE+NEYPWQV LL +Q   S++TPFCGG+L+SN+EVLTAAHC  GST  YV LGEHD+    DG+K ++VC +T +P+YN    D+D++IL LC+  V FT +ISP CLPT+
Sbjct:   48 CKCGQANVKTKIVGGQETEKNEYPWQVALLRNQQPSSTNTPFCGGSLISNQEVLTAAHCIIGSTI-YVALGEHDINDPNDGQKIVKVCSSTKHPSYNGNN-DFDYAILKLCDSPVTFTKEISPVCLPTA 174          
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Match: UPI000C795525 (trypsin alpha-3-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C795525)

HSP 1 Score: 134 bits (337), Expect = 1.010e-35
Identity = 63/125 (50.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   55 CRCGQANTKVKIVGGAATEENEYPWQVGLLSSQSSSTPFCGGTLVSNKEVLTAAHCTSG--STAAYVLLGEHDLRRA-DGEKKIRVCGTTNNPNYNSRTVDYDFSILTLCEEVDFTTDISPACLP 420
            C+CG  N   +IVGG+ T +N+YPWQ+GL+ + +   P+CGG+L+SN++VLTAAHCT G  ST  +V+LGE+DL    DG+  +RVCG   +P Y S   D+DFSIL LC+ V  +  I P CLP
Sbjct:   58 CKCGVRNYSSRIVGGSPTGQNKYPWQIGLVRTSTGKIPYCGGSLISNQDVLTAAHCTMGTSSTGIFVMLGENDLLNDNDGQTVVRVCGKVEHPRYQSSNQDFDFSILRLCDPVTVSKGILPVCLP 182          
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Match: A0A6A4VST0_AMPAM (Trypsin-1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VST0_AMPAM)

HSP 1 Score: 118 bits (295), Expect = 8.620e-29
Identity = 58/129 (44.96%), Postives = 92/129 (71.32%), Query Frame = 1
Query:   61 CGQANTKVKIVGGAATEENEYPWQVGLLSSQSSSTPFCGGTLVSNKEVLTAAHCTSGSTAA--YVLLGEHDLRRADGEKKIRVCGTTNNPNYNSRTVDYDFSILTLCEEVDFTT---DISPACLPTSSN 432
            CG AN   +IVGG ATE NEYPWQVGL+++  ++ P+CGGT+++N+ V+TAAHCT+G +A    VLL +H++     + ++ V    ++P+YNSRT+ +DFS+L L + +DF++    ++PACLP+  +
Sbjct:  167 CGVANRVTRIVGGEATEVNEYPWQVGLVNT-GNNRPWCGGTVINNQWVMTAAHCTAGESAGNLQVLLRKHNIGSDSNQIRMSVSQIVDHPSYNSRTLSHDFSLLKLSQTIDFSSLSNQVAPACLPSGGD 294          
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Match: A0A1D8QLQ6_EUPSU (Trypsin n=1 Tax=Euphausia superba TaxID=6819 RepID=A0A1D8QLQ6_EUPSU)

HSP 1 Score: 114 bits (286), Expect = 2.280e-27
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   55 CRCGQANTKVKIVGGAATEENEYPWQVGLLSSQSSSTPFCGGTLVSNKEVLTAAHCTSGSTAAYVLLGEHDLRRAD-GEKKIRVCGTTNNPNYNSRTVDYDFSILTLC-----EEVDFTTDISPACLPTSSN 432
            C CGQAN   +IVGG  TE NEYPWQV L+S + S+  FCGG+L++++ VLTAAHCT  S    V+LG H     D GE+++ V    ++PNYNSR +D DFS+L L      E VD    I P CLP++SN
Sbjct:  188 CVCGQANRATRIVGGQTTEVNEYPWQVALVS-RGSTQVFCGGSLINDRWVLTAAHCTQ-SGVQQVILGNHLQSSTDTGERRVNVRRVVDHPNYNSRNLDNDFSLLELSTPQNLENVD--PQIRPVCLPSASN 315          
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Match: A0A6A4V2E0_AMPAM (Trypsin-7 n=7 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4V2E0_AMPAM)

HSP 1 Score: 113 bits (282), Expect = 2.890e-27
Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 1
Query:   61 CGQANTKVKIVGGAATEENEYPWQVGLLSSQSSSTPFCGGTLVSNKEVLTAAHCTSGSTAA--YVLLGEHDLRRADGEKKIRVCGTTNNPNYNSRTVD-YDFSILTLCEEVDFTT---DISPACLPT 423
            CG AN   +I+GG  TE NEYPWQ GL+S+  S T +CGGT+++N+ VLTAAHCT+G +A+   VLL EH +  +DGE +  V    ++P+Y S +   YDFS+L L   +DF++    ++PACLPT
Sbjct:  145 CGVANRASRIIGGVQTEVNEYPWQAGLVSTGGSRT-WCGGTVINNRYVLTAAHCTAGQSASGIQVLLREHRIGTSDGEMRFSVAQIIDHPSYTSASGSGYDFSLLKLSTTIDFSSLSNRVAPACLPT 270          
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Match: UPI001C908F6F (trypsin-1-like n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C908F6F)

HSP 1 Score: 112 bits (279), Expect = 7.200e-27
Identity = 61/126 (48.41%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   61 CGQANTKVKIVGGAATEENEYPWQVGLLSSQSSSTPFCGGTLVSNKEVLTAAHCTSGSTA--AYVLLGEHDLRRADGEKKIRVCGTTNNPNYNS-RTVDYDFSILTLCEEVDFTT---DISPACLP 420
            CG A    +IVGG  TE  EYPWQ GL+S+   S  +CGGT+++++ VLTAAHCT G +A    VLLGEH +  ADGE+++ V   T +P Y S  T  YDFS+L L + +DF      ++PACLP
Sbjct:  104 CGLARRSTRIVGGVETEVREYPWQAGLVSA-GDSWIWCGGTVINDRYVLTAAHCTVGRSADRLEVLLGEHAMFLADGERRVAVAAVTEHPRYRSVDTTGYDFSLLRLAQRLDFAALGGRVAPACLP 228          
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Match: UPI0018853FC7 (venom serine protease 34-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018853FC7)

HSP 1 Score: 114 bits (285), Expect = 9.530e-27
Identity = 62/131 (47.33%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   55 CRCGQANTKVKIVGGAATEENEYPWQVGLLSSQSSSTPFCGGTLVSNKEVLTAAHCTSGSTAAY--VLLGEHDLRRADGEKKIRVCGTTNNPNYNSRTVD-YDFSILTLCEEVDFTTD--ISPACLPTSSN 432
            C CG  N   +IVGG  TE NEYPWQ GL+S+  + T +CGGT+++N+ V+TAAHCT GS+ +   VLL EH +  +DGE +  V    N+P+Y+S +   YDFS+L L   + F +D  ++PACLPT+ N
Sbjct:  400 CCCGIPNRSSRIVGGVETEVNEYPWQAGLVSAGGTRT-WCGGTVINNRYVMTAAHCTVGSSPSQIEVLLKEHRISNSDGEIRASVQQIINHPSYSSASSSGYDFSLLKLTNPITFPSDNTLAPACLPTAGN 529          
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Match: A0A6A4W4W6_AMPAM (Serine/threonine-protein phosphatase n=2 Tax=Pancrustacea TaxID=197562 RepID=A0A6A4W4W6_AMPAM)

HSP 1 Score: 113 bits (283), Expect = 1.480e-26
Identity = 62/127 (48.82%), Postives = 83/127 (65.35%), Query Frame = 1
Query:   61 CGQANTKVKIVGGAATEENEYPWQVGLLSSQSSSTPFCGGTLVSNKEVLTAAHCTSGSTA--AYVLLGEHDLRRADGEKKIRVCGTTNNPNYNS-RTVDYDFSILTLCEEVDFTT---DISPACLPT 423
            CG A    +IVGG  TE  EYPWQ GL+S+   S  +CGGT+++++ VLTAAHCT G +A    VLLGEH +  ADGE+++ V   T +P Y S  T  YDFS+L L +++DF      ++PACLPT
Sbjct:  326 CGLARRSTRIVGGVETEVREYPWQAGLVSA-GDSWIWCGGTVINDRYVLTAAHCTVGRSADRLEVLLGEHAMFLADGERRVAVAAVTEHPRYRSVDTTGYDFSLLRLAQQLDFGALGGRVAPACLPT 451          
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Match: A0A6A4VBG1_AMPAM (Trypsin-3 n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VBG1_AMPAM)

HSP 1 Score: 112 bits (280), Expect = 1.710e-26
Identity = 60/129 (46.51%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   61 CGQANTKVKIVGGAATEENEYPWQVGLLSSQSSSTPFCGGTLVSNKEVLTAAHCTSGSTAA--YVLLGEHDLRRADGEKKIRVCGTTNNPNYNSRTVDYDFSILTLCEEVDFTTD---ISPACLPTSSN 432
            CG AN   +IVGG  TE NEYPWQVGL+++  ++ P+CGGTL++++ VLTAAHCT   TA    VLL +H+L     + +  V    N+P+YNS T+ +DFS+L L   +DF+     ++PACLP  +N
Sbjct:  197 CGIANRATRIVGGVPTEVNEYPWQVGLVNA-GNNRPWCGGTLINDRWVLTAAHCTERQTAGNLQVLLRKHNLDSDANQVRKNVAQIVNHPSYNSATLTHDFSLLELSVPIDFSEFRNLVAPACLPADNN 324          
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Match: UPI0018858849 (trypsin-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018858849)

HSP 1 Score: 108 bits (270), Expect = 4.710e-26
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   55 CRCGQANTKVKIVGGAATEENEYPWQVGLLSSQSSSTPFCGGTLVSNKEVLTAAHCTSGSTAA--YVLLGEHDLRRADGEKKIRVCGTTNNPNYNSRTVDYDFSILTLCEEVDFTTDISPACLPTS 426
            C CG AN   ++VGG   E NEYPWQ GL+S   + T +CGG+L++++ V+TAAHCTSG +A+   VLLG+H +  ADGE +  V    ++P+Y + +  YD S+L L   V F +  +  CLPT+
Sbjct:   37 CSCGMANRASRVVGGVEAEVNEYPWQAGLVSPGGTRT-WCGGSLINDRYVVTAAHCTSGKSASGIQVLLGDHRISVADGESRHTVSQIIDHPSYVTYSQGYDISLLKLSSPVTFNSRRATVCLPTA 161          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105753.904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C78AAE52.010e-4259.69trypsin-like n=1 Tax=Eurytemora affinis TaxID=8801... [more]
UPI000C7955251.010e-3550.40trypsin alpha-3-like n=1 Tax=Eurytemora affinis Ta... [more]
A0A6A4VST0_AMPAM8.620e-2944.96Trypsin-1 n=2 Tax=Amphibalanus amphitrite TaxID=12... [more]
A0A1D8QLQ6_EUPSU2.280e-2750.00Trypsin n=1 Tax=Euphausia superba TaxID=6819 RepID... [more]
A0A6A4V2E0_AMPAM2.890e-2748.03Trypsin-7 n=7 Tax=Amphibalanus amphitrite TaxID=12... [more]
UPI001C908F6F7.200e-2748.41trypsin-1-like n=2 Tax=Amphibalanus amphitrite Tax... [more]
UPI0018853FC79.530e-2747.33venom serine protease 34-like n=1 Tax=Pollicipes p... [more]
A0A6A4W4W6_AMPAM1.480e-2648.82Serine/threonine-protein phosphatase n=2 Tax=Pancr... [more]
A0A6A4VBG1_AMPAM1.710e-2646.51Trypsin-3 n=3 Tax=Amphibalanus amphitrite TaxID=12... [more]
UPI00188588494.710e-2644.44trypsin-like n=1 Tax=Pollicipes pollicipes TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig105753contigEcto-sp8_S_contig105753:8..439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start0
Seed ortholog score104.8
Seed ortholog evalue3.5e-20
Seed eggNOG ortholog126957.SMAR007984-PA
Model size432
KEGG koko:K09640
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Belongs to the peptidase S1 family
EggNOG OGs39S5Z@33154,3BKRV@33208,3D24J@33213,42A72@6656,COG5640@1,KOG3627@2759
Cds size432
COG Functional cat.O
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.5885623-CDS-Ecto-sp8_S_contig105753:7..4391681143155.5885623-CDS-Ecto-sp8_S_contig105753:7..439Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105753 8..439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig105753.904.1prot_Ecto-sp8_S_contig105753.904.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig105753 8..439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig105753.904.1

>prot_Ecto-sp8_S_contig105753.904.1 ID=prot_Ecto-sp8_S_contig105753.904.1|Name=mRNA_Ecto-sp8_S_contig105753.904.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=144bp
PTPSPVPSPAPAPTPTGSCRCGQANTKVKIVGGAATEENEYPWQVGLLSS
QSSSTPFCGGTLVSNKEVLTAAHCTSGSTAAYVLLGEHDLRRADGEKKIR
VCGTTNNPNYNSRTVDYDFSILTLCEEVDFTTDISPACLPTSSN
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mRNA from alignment at Ecto-sp8_S_contig105753:8..439-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig105753.904.1 ID=mRNA_Ecto-sp8_S_contig105753.904.1|Name=mRNA_Ecto-sp8_S_contig105753.904.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105753:8..439- (Ectocarpus species8 EcLAC_412)
CCCACTCCTTCCCCAGTGCCCTCTCCTGCACCAGCTCCAACCCCTACCGG ATCTTGCAGGTGCGGACAGGCTAACACCAAAGTCAAGATAGTAGGGGGCG CAGCTACAGAGGAGAATGAGTACCCATGGCAAGTAGGACTACTCTCAAGT CAGTCTTCTTCAACCCCTTTCTGTGGAGGAACTCTTGTGAGTAACAAGGA GGTTCTAACTGCTGCCCATTGTACAAGTGGTTCTACAGCTGCATATGTTT TACTTGGTGAACATGACCTGCGAAGAGCTGATGGTGAAAAGAAAATTAGG GTGTGTGGAACAACCAATAACCCTAACTACAACTCAAGAACAGTTGATTA TGACTTTTCCATCCTTACACTGTGTGAGGAAGTTGATTTTACAACTGACA TCAGCCCCGCCTGCCTGCCTACCAGCAGCAAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105753:8..439-

>mRNA_Ecto-sp8_S_contig105753.904.1 ID=mRNA_Ecto-sp8_S_contig105753.904.1|Name=mRNA_Ecto-sp8_S_contig105753.904.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105753:8..439- (Ectocarpus species8 EcLAC_412)
CCCACTCCTTCCCCAGTGCCCTCTCCTGCACCAGCTCCAACCCCTACCGG
ATCTTGCAGGTGCGGACAGGCTAACACCAAAGTCAAGATAGTAGGGGGCG
CAGCTACAGAGGAGAATGAGTACCCATGGCAAGTAGGACTACTCTCAAGT
CAGTCTTCTTCAACCCCTTTCTGTGGAGGAACTCTTGTGAGTAACAAGGA
GGTTCTAACTGCTGCCCATTGTACAAGTGGTTCTACAGCTGCATATGTTT
TACTTGGTGAACATGACCTGCGAAGAGCTGATGGTGAAAAGAAAATTAGG
GTGTGTGGAACAACCAATAACCCTAACTACAACTCAAGAACAGTTGATTA
TGACTTTTCCATCCTTACACTGTGTGAGGAAGTTGATTTTACAACTGACA
TCAGCCCCGCCTGCCTGCCTACCAGCAGCAAC
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