mRNA_Ecto-sp8_S_contig10573.902.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10573.902.1
Unique NamemRNA_Ecto-sp8_S_contig10573.902.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10573.902.1 vs. uniprot
Match: A0A6H5LPM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPM1_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 9.010e-72
Identity = 136/158 (86.08%), Postives = 136/158 (86.08%), Query Frame = -3 
Query:    2 DGRTALKQCAKWAARVWAHRHAGVAAGXXXXXXXXXXXXXXDDGEEIVNTRVCMTASRALAEALEAFGMAAGELEGCRLAAVILESESESNRGKEAARGLAGLMRSLSGRPFCSALAGVLLENMPEQXXXXXXXXVEVEKLKALLRRQAAVPIGVVSA 475
            DGRTALKQCAKWAARVWAHRHAGVAAG                 EEIVNTRVCMTASRALAEALEAF MAAGELEGCRLAAVILESESESN GKEAARGLAGLMRSLSGR FCSALA VLLENMPEQXXXXXXX VEVEKLKALLRRQAAVPIGVVSA
Sbjct:   86 DGRTALKQCAKWAARVWAHRHAGVAAGAAGGRKYD---------EEIVNTRVCMTASRALAEALEAFRMAAGELEGCRLAAVILESESESNGGKEAARGLAGLMRSLSGRTFCSALARVLLENMPEQXXXXXXXVVEVEKLKALLRRQAAVPIGVVSA 234
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BLAST of mRNA_Ecto-sp8_S_contig10573.902.1 vs. uniprot
Match: D8LSY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY8_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 2.610e-50
Identity = 94/105 (89.52%), Postives = 95/105 (90.48%), Query Frame = -3 
Query:    2 MTASRALAEALEAFGMAAGELEGCRLAAVILESESESNRGKEAARGLAGLMRSLSGRPFCSALAGVLLENMPEQXXXXXXXXVEVEKLKALLRRQAAVPIGVVSA 316
            MTASRALAEALEAFG+AAGELEGCRLAAVILESESESN GKEAARGLAGLMRSLSGRPFCSALAGVLLENMPEQ        VEVEKLKALLRRQAAVPI VVSA
Sbjct:    1 MTASRALAEALEAFGVAAGELEGCRLAAVILESESESNGGKEAARGLAGLMRSLSGRPFCSALAGVLLENMPEQHQGGGGGVVEVEKLKALLRRQAAVPIRVVSA 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10573.902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LPM1_9PHAE9.010e-7286.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSY8_ECTSI2.610e-5089.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10573contigEcto-sp8_S_contig10573:4669..5145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size477
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.4634697-UTR-Ecto-sp8_S_contig10573:4668..47721681143155.4634697-UTR-Ecto-sp8_S_contig10573:4668..4772Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10573 4669..4772 +
1681143155.478232-UTR-Ecto-sp8_S_contig10573:5090..51451681143155.478232-UTR-Ecto-sp8_S_contig10573:5090..5145Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10573 5091..5145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.471167-CDS-Ecto-sp8_S_contig10573:4772..50901681143155.471167-CDS-Ecto-sp8_S_contig10573:4772..5090Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10573 4773..5090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10573.902.1prot_Ecto-sp8_S_contig10573.902.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10573 4773..5090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10573.902.1

>prot_Ecto-sp8_S_contig10573.902.1 ID=prot_Ecto-sp8_S_contig10573.902.1|Name=mRNA_Ecto-sp8_S_contig10573.902.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=106bp
MFSRSTPARAEQNGLPERDRISPARPRAASLPRFDSDSDSSITAARRHPS
SSPAAIPNASSASASARDAVMHTRVLTISSPSSPPPAAPTAPAAPAAPAA
TPAWR*
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mRNA from alignment at Ecto-sp8_S_contig10573:4669..5145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10573.902.1 ID=mRNA_Ecto-sp8_S_contig10573.902.1|Name=mRNA_Ecto-sp8_S_contig10573.902.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=477bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10573:4669..5145+ (Ectocarpus species8 EcLAC_412)
CGGCCGACACCACCCCTATCGGAACAGCAGCCTGCCGTCGGAGCAAGGCC
TTCAGCTTTTCCACCTCCACGCCGCCGCCGCCGCCGCCCTGCTGCTGCTC
GGGCATGTTCTCCAGGAGCACTCCGGCGAGGGCAGAGCAGAACGGCCTCC
CTGAGAGAGACCGCATCAGCCCCGCCAGGCCCCGAGCGGCCTCCTTGCCC
CGGTTCGACTCCGACTCGGACTCCAGTATCACCGCCGCGAGACGGCACCC
TTCGAGCTCCCCGGCCGCCATCCCGAACGCCTCCAGCGCCTCCGCCAGCG
CTCGCGACGCGGTCATGCACACGCGGGTGTTGACGATCTCCTCGCCGTCG
TCCCCTCCCCCGGCGGCGCCTACGGCGCCTGCCGCGCCTGCCGCGCCTGC
GGCCACGCCGGCGTGGCGGTGAGCCCACACCCTGGCCGCCCACTTGGCGC
ACTGCTTTAGCGCGGTGCGGCCATCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10573:4669..5145+

>mRNA_Ecto-sp8_S_contig10573.902.1 ID=mRNA_Ecto-sp8_S_contig10573.902.1|Name=mRNA_Ecto-sp8_S_contig10573.902.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10573:4669..5145+ (Ectocarpus species8 EcLAC_412)
ATGTTCTCCAGGAGCACTCCGGCGAGGGCAGAGCAGAACGGCCTCCCTGA
GAGAGACCGCATCAGCCCCGCCAGGCCCCGAGCGGCCTCCTTGCCCCGGT
TCGACTCCGACTCGGACTCCAGTATCACCGCCGCGAGACGGCACCCTTCG
AGCTCCCCGGCCGCCATCCCGAACGCCTCCAGCGCCTCCGCCAGCGCTCG
CGACGCGGTCATGCACACGCGGGTGTTGACGATCTCCTCGCCGTCGTCCC
CTCCCCCGGCGGCGCCTACGGCGCCTGCCGCGCCTGCCGCGCCTGCGGCC
ACGCCGGCGTGGCGGTGA
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