mRNA_Ecto-sp8_S_contig105714.899.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig105714.899.1
Unique NamemRNA_Ecto-sp8_S_contig105714.899.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Match: A0A127MGY6_9SPHN (Hydroxyacylglutathione hydrolase n=7 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A127MGY6_9SPHN)

HSP 1 Score: 198 bits (504), Expect = 2.480e-62
Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 1 
Query:    1 TLFAMGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTAKDNF 324
            TLFAMGCGRLFEGT EQMYDNMRKLEALP+AT +YCAHEYTQSNGEYALVAEPDN+ALKERMAEVLTLR RGE TVPTTIR ERATNPFMRA SAAELG RRTAKDNF
Sbjct:  133 TLFAMGCGRLFEGTAEQMYDNMRKLEALPDATKIYCAHEYTQSNGEYALVAEPDNMALKERMAEVLTLRERGEATVPTTIRLERATNPFMRASSAAELGARRTAKDNF 240
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Match: A0A1B6Z483_9SPHN (Hydroxyacylglutathione hydrolase n=1 Tax=Sphingomonadales bacterium EhC05 TaxID=1849171 RepID=A0A1B6Z483_9SPHN)

HSP 1 Score: 189 bits (481), Expect = 7.670e-59
Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:    1 TLFAMGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTAKDNF 324
            TLFAMGCGRLFEGT +QM+DNMRKLEALP++T +YCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGE TVPTTI+ E+ATNPFMRA S  E  ERRTAKDNF
Sbjct:  133 TLFAMGCGRLFEGTADQMFDNMRKLEALPDSTKIYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEATVPTTIKLEKATNPFMRAASVEEFAERRTAKDNF 240
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Match: W9BVT8_9SPHN (Hydroxyacylglutathione hydrolase n=6 Tax=Sphingomonadales TaxID=204457 RepID=W9BVT8_9SPHN)

HSP 1 Score: 173 bits (438), Expect = 2.680e-52
Identity = 85/108 (78.70%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    1 TLFAMGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTAKDNF 324
            TLFAMGCGRLFEGT EQM+DNM +L ALP  T VYCAHEYT+SNG YALVAEPDN AL ERM +V  +RARGEPTVPTTI  ERATNPFMRA+SA EL ERR AKDNF
Sbjct:  133 TLFAMGCGRLFEGTAEQMFDNMTRLAALPGETAVYCAHEYTESNGRYALVAEPDNPALAERMEQVFEMRARGEPTVPTTIALERATNPFMRARSAEELAERRAAKDNF 240
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Match: UPI0002F5F4F6 (hydroxyacylglutathione hydrolase n=1 Tax=Blastomonas sp. AAP53 TaxID=1248760 RepID=UPI0002F5F4F6)

HSP 1 Score: 172 bits (437), Expect = 3.800e-52
Identity = 85/108 (78.70%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 TLFAMGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTAKDNF 324
            TLFAMGCGRLFEGT EQM+DNM +L  LP  T VYCAHEYT+SNG YALVAEPDN A+ +RMA+VL LRARGE TVPTTI  ERATNPFMRA+SAAEL ERR AKDNF
Sbjct:  133 TLFAMGCGRLFEGTAEQMFDNMTRLAELPGETQVYCAHEYTESNGRYALVAEPDNKAIADRMAQVLALRARGEATVPTTIALERATNPFMRARSAAELAERRVAKDNF 240
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Match: UPI00053C05F6 (hydroxyacylglutathione hydrolase n=1 Tax=Sphingomonas sp. 35-24ZXX TaxID=1545915 RepID=UPI00053C05F6)

HSP 1 Score: 172 bits (436), Expect = 5.390e-52
Identity = 85/108 (78.70%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    1 TLFAMGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTAKDNF 324
            TLFAMGCGRLFEGT EQM+DNM +L  LP  T VYCAHEYT+SNG YALVAEP+N AL ERM +VL +RARGEPTVPTTI  ERATNPFMRA SAAEL ERR AKDNF
Sbjct:  133 TLFAMGCGRLFEGTAEQMFDNMTRLARLPGETQVYCAHEYTESNGRYALVAEPENTALAERMEQVLAMRARGEPTVPTTIALERATNPFMRAGSAAELAERRAAKDNF 240
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Match: A0A1N6HIL0_9SPHN (Hydroxyacylglutathione hydrolase n=1 Tax=Parasphingorhabdus marina DSM 22363 TaxID=1123272 RepID=A0A1N6HIL0_9SPHN)

HSP 1 Score: 171 bits (432), Expect = 2.050e-51
Identity = 85/108 (78.70%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 TLFAMGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTAKDNF 324
            TLFAMGCGRLFEGT EQM++NM+KL  LP  T VYCAHEYTQSNGEYALVAEPDN AL+ RM EV+  RARGE TVPTTI  E+ATNPFMRA SAAEL ERR+AKDNF
Sbjct:  133 TLFAMGCGRLFEGTAEQMFENMQKLSRLPGETSVYCAHEYTQSNGEYALVAEPDNEALRHRMNEVVAARARGEATVPTTIALEQATNPFMRATSAAELAERRSAKDNF 240
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Match: UPI00166482B3 (hydroxyacylglutathione hydrolase n=1 Tax=Blastomonas aquatica TaxID=1510276 RepID=UPI00166482B3)

HSP 1 Score: 170 bits (430), Expect = 4.360e-51
Identity = 83/108 (76.85%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    1 TLFAMGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTAKDNF 324
            TLFAMGCGRLFEGT EQM+DNM++L ALP  T+VYCAHEYTQSNG YALVAEPDN A+  RMAEV  +R RGE TVPTTI  ERATNPFMRA SAA+L +RR AKDNF
Sbjct:  133 TLFAMGCGRLFEGTAEQMFDNMQRLSALPGETVVYCAHEYTQSNGRYALVAEPDNAAISARMAEVDAMRLRGEATVPTTIALERATNPFMRASSAAQLADRRAAKDNF 240
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Match: A0A6H2DLR6_9SPHN (Hydroxyacylglutathione hydrolase n=1 Tax=Parasphingorhabdus halotolerans TaxID=2725558 RepID=A0A6H2DLR6_9SPHN)

HSP 1 Score: 169 bits (427), Expect = 1.210e-50
Identity = 84/108 (77.78%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:    1 TLFAMGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTAKDNF 324
            TLFAMGCGRLFEGT  QM+DNMRKLE LP  T VYCAHEYTQSNGEYALVAEP N ALK+RM EV+  RA+GE TVPTTI  E+ATNPFMRA S  +L ERRTAKDNF
Sbjct:  134 TLFAMGCGRLFEGTAAQMFDNMRKLEKLPPETNVYCAHEYTQSNGEYALVAEPGNQALKDRMDEVMAARAKGEATVPTTIALEQATNPFMRAASIEQLAERRTAKDNF 241
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Match: A0A494TFZ0_SPHPE (Hydroxyacylglutathione hydrolase n=1 Tax=Sphingomonas paeninsulae TaxID=2319844 RepID=A0A494TFZ0_SPHPE)

HSP 1 Score: 169 bits (427), Expect = 1.280e-50
Identity = 84/108 (77.78%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 TLFAMGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTAKDNF 324
            TLFAMGCGRLFEGT EQM+DNMRKLEALP+ T VYCAHEYTQSNG YALVAEPDN+ L  RM  V T RA GE TVPTTI  ERATNPFMRA S A+L ERR AKD+F
Sbjct:  134 TLFAMGCGRLFEGTAEQMFDNMRKLEALPDETAVYCAHEYTQSNGRYALVAEPDNMDLSARMKRVDTARANGEATVPTTIGLERATNPFMRAASVAQLAERRAAKDSF 241
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Match: A0A3B0SK96_9ZZZZ (Hydroxyacylglutathione hydrolase n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0SK96_9ZZZZ)

HSP 1 Score: 167 bits (422), Expect = 6.690e-50
Identity = 84/108 (77.78%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 TLFAMGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPDNLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTAKDNF 324
            TLFAMGCGRLFEG+  QMYDNM+KL  LP  T VYCAHEYTQSNGEYALVAEPDN ALK+RM  VL  RA+GE TVPTTI  E+ATNPFMRA S  EL ERRTAKDNF
Sbjct:  133 TLFAMGCGRLFEGSAAQMYDNMQKLAKLPGDTKVYCAHEYTQSNGEYALVAEPDNQALKDRMDAVLAARAKGEATVPTTIGLEQATNPFMRAASVEELAERRTAKDNF 240
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105714.899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127MGY6_9SPHN2.480e-6290.74Hydroxyacylglutathione hydrolase n=7 Tax=Sphingomo... [more]
A0A1B6Z483_9SPHN7.670e-5985.19Hydroxyacylglutathione hydrolase n=1 Tax=Sphingomo... [more]
W9BVT8_9SPHN2.680e-5278.70Hydroxyacylglutathione hydrolase n=6 Tax=Sphingomo... [more]
UPI0002F5F4F63.800e-5278.70hydroxyacylglutathione hydrolase n=1 Tax=Blastomon... [more]
UPI00053C05F65.390e-5278.70hydroxyacylglutathione hydrolase n=1 Tax=Sphingomo... [more]
A0A1N6HIL0_9SPHN2.050e-5178.70Hydroxyacylglutathione hydrolase n=1 Tax=Parasphin... [more]
UPI00166482B34.360e-5176.85hydroxyacylglutathione hydrolase n=1 Tax=Blastomon... [more]
A0A6H2DLR6_9SPHN1.210e-5077.78Hydroxyacylglutathione hydrolase n=1 Tax=Parasphin... [more]
A0A494TFZ0_SPHPE1.280e-5077.78Hydroxyacylglutathione hydrolase n=1 Tax=Sphingomo... [more]
A0A3B0SK96_9ZZZZ6.690e-5077.78Hydroxyacylglutathione hydrolase n=1 Tax=hydrother... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig105714contigEcto-sp8_S_contig105714:3..329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score166.8
Seed ortholog evalue5.5e-39
Seed eggNOG ortholog1248760.ANFZ01000009_gene1353
Preferred namegloB
Model size327
KEGG rclassRC00004,RC00137
KEGG koko:K01069
KEGG ReactionR01736
KEGG Pathwayko00620,map00620
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004416,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0034641,GO:0043603,GO:0044237,GO:0051186,GO:0071704,GO:1901564
Exons1
EggNOG free text desc.Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EggNOG OGs1MU8Q@1224,2K0DY@204457,2TSVS@28211,COG0491@1,COG0491@2
EC3.1.2.6
Cds size315
COG Functional cat.S
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.34037-UTR-Ecto-sp8_S_contig105714:2..141681143155.34037-UTR-Ecto-sp8_S_contig105714:2..14Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig105714 3..14 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.3518467-CDS-Ecto-sp8_S_contig105714:14..3291681143155.3518467-CDS-Ecto-sp8_S_contig105714:14..329Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105714 15..329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig105714.899.1prot_Ecto-sp8_S_contig105714.899.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig105714 15..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig105714.899.1

>prot_Ecto-sp8_S_contig105714.899.1 ID=prot_Ecto-sp8_S_contig105714.899.1|Name=mRNA_Ecto-sp8_S_contig105714.899.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp
MGCGRLFEGTPEQMYDNMRKLEALPEATLVYCAHEYTQSNGEYALVAEPD
NLALKERMAEVLTLRARGEPTVPTTIRQERATNPFMRAKSAAELGERRTA
KDNF*
back to top

mRNA from alignment at Ecto-sp8_S_contig105714:3..329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig105714.899.1 ID=mRNA_Ecto-sp8_S_contig105714.899.1|Name=mRNA_Ecto-sp8_S_contig105714.899.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=327bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105714:3..329+ (Ectocarpus species8 EcLAC_412)
ACCCTGTTCGCCATGGGCTGCGGACGCCTGTTCGAAGGAACGCCCGAGCA
GATGTATGACAATATGCGCAAGCTGGAGGCGCTGCCGGAAGCCACACTGG
TCTATTGCGCCCATGAATATACCCAGAGCAATGGCGAATATGCTCTGGTC
GCGGAGCCGGACAATCTCGCCCTGAAGGAGCGTATGGCCGAGGTGTTGAC
GCTGCGTGCCCGCGGCGAGCCGACTGTGCCGACGACGATCAGGCAAGAAC
GCGCCACCAACCCTTTCATGCGGGCAAAATCGGCAGCGGAGCTTGGCGAA
CGACGGACCGCGAAGGATAATTTCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105714:3..329+

>mRNA_Ecto-sp8_S_contig105714.899.1 ID=mRNA_Ecto-sp8_S_contig105714.899.1|Name=mRNA_Ecto-sp8_S_contig105714.899.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105714:3..329+ (Ectocarpus species8 EcLAC_412)
ATGGGCTGCGGACGCCTGTTCGAAGGAACGCCCGAGCAGATGTATGACAA
TATGCGCAAGCTGGAGGCGCTGCCGGAAGCCACACTGGTCTATTGCGCCC
ATGAATATACCCAGAGCAATGGCGAATATGCTCTGGTCGCGGAGCCGGAC
AATCTCGCCCTGAAGGAGCGTATGGCCGAGGTGTTGACGCTGCGTGCCCG
CGGCGAGCCGACTGTGCCGACGACGATCAGGCAAGAACGCGCCACCAACC
CTTTCATGCGGGCAAAATCGGCAGCGGAGCTTGGCGAACGACGGACCGCG
AAGGATAATTTCTGA
back to top