mRNA_Ecto-sp8_S_contig10571.897.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10571.897.1
Unique NamemRNA_Ecto-sp8_S_contig10571.897.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Match: D8LI21_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI21_ECTSI)

HSP 1 Score: 756 bits (1951), Expect = 4.070e-261
Identity = 462/502 (92.03%), Postives = 465/502 (92.63%), Query Frame = 1 
Query:   91 RYNEREVIPPSSSLSSANASRSVSLALMAAPFEGSTAWNASEPKREFDLEQGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECGYGTDGSRATTLGGSRMGPRFANPLYAFRVPPKGELGHGTSTAAVAAATA------SPSAAGDMDEDDYGAEVKEGGGTGFCVGGDARDNSGIGGGAGCRVGVSPRKAVATTSAGGGGRSDGLDGGDEPTTTEHDQXXXXXXXXVAGGADFSTATTGAFSDSLGDRSNGNGAYPRPVGMEGVGPLGNGSEAADAAEALRRSSAPDLPRASGNNGKNPPLPRRRSLGDDPQARARRTAGRFTSSSSSSSIAASSVLQAAEGAVAGAQSLSPLETFVPGAREVSGVVAGLARLAAASHKGDPKDKRRRVRWCRSVVLTLERALSVLGKATEQDTDAIRVALGAVREPVACMVEIVHSYKNKHVVSEVFFSTMFRRRQKEADEAILSAERLLSARQDNSESQRKTSEV 1578
            RYNEREVIPPSSSLSSANASRSVSLALMAAPFEGSTAWNASE KREFDLEQGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           ECGYGTDGSRATTLGGSRMGPRFANPLYAFRVPPKGELGHGTSTAAV           SPSAAGDMDEDDYGAEVKEGGGTGFCVGGDARDNSGIGGGAGCRVGVSPRKAVATT AGGGGRS+GLDGGDEPTTTEHDQ        VAGGADFSTATTGAFSDSLGDRSNGNG YP+PVGMEGVGPLGNGSEAADAAEALRRSSAPD PRA  NNGKNPPLPRRRSLGDDPQARARRTAGRFTSSSSSS IAASSVLQAAEGAVAGAQSLSPLETFVPGAREVSGVVAGLARLAAASHKGDPKDKRRRVRWCRSVVLTLERAL+VLGKATEQDTDAIRVALGAVREPVACMVEIVHSYKNKHVVSEVFFSTMFRRRQKEADEAILSAERLLSARQDNSESQRKTSEV
Sbjct:   30 RYNEREVIPPSSSLSSANASRSVSLALMAAPFEGSTAWNASERKREFDLEQGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----------ECGYGTDGSRATTLGGSRMGPRFANPLYAFRVPPKGELGHGTSTAAVXXXXXXXXXXXSPSAAGDMDEDDYGAEVKEGGGTGFCVGGDARDNSGIGGGAGCRVGVSPRKAVATTPAGGGGRSEGLDGGDEPTTTEHDQHNEGV---VAGGADFSTATTGAFSDSLGDRSNGNGTYPQPVGMEGVGPLGNGSEAADAAEALRRSSAPDFPRARDNNGKNPPLPRRRSLGDDPQARARRTAGRFTSSSSSS-IAASSVLQAAEGAVAGAQSLSPLETFVPGAREVSGVVAGLARLAAASHKGDPKDKRRRVRWCRSVVLTLERALAVLGKATEQDTDAIRVALGAVREPVACMVEIVHSYKNKHVVSEVFFSTMFRRRQKEADEAILSAERLLSARQDNSESQRKTSEV 517
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BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Match: A0A6H5L241_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L241_9PHAE)

HSP 1 Score: 615 bits (1585), Expect = 4.880e-210
Identity = 394/487 (80.90%), Postives = 399/487 (81.93%), Query Frame = 1 
Query:   91 RYNEREVIPPSSSLSSANASRSVSLALMAAPFEGSTAWNASEPKREFDLEQGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECGYGTDGSRATTLGGSRMGPRFANPLYAFRVPPKGELGHGTSTA---AVAAATASPSAAGDMDEDDYGAEVKEGGGTGFCVGGDARDNSG-IGGGAGCRVGVSPRKAVATTSAGGGGRSDGLDGGDEPTTTEHDQXXXXXXXXVAGGADFSTATTGAFSDSLGDRSNGNGAYPRPVGMEGVGPLGNGSEAADAAEALRRSSAPDLPRASGNNGKNPPLPRRRSLGDDPQARARRTAGRFTS-SSSSSSIAASSVLQAAEGAVAGAQSLSPLETFVPGAREVSGVVAGLARLAAASHKGDPKDKRRRVRWCRSVVLTLERALSVLGKATEQDTDAIRVALGAVREPVACMVEIVHSYKNKHVVSEVFFSTMFRRRQKEADEAILSAERLLSA 1536
            RYNEREVIPPSSSLSSANASRSVSLALMAAPFEGS+AWNASEPKREFDLEQGGG   XXXXXXXXXXXXXXXXXXXXXXX                CGYGTDGSRATTLGGSRMGPRFANPLYAFRVPPK +LGHGTSTA   AV AATASPSAAGDMDEDDYGAEVKEGGGTGFCVGGDA DNSG IGGGAGCRVGVSPRKAVATT AGGGGRSDGLD GDEP TTE DQ        VAGGADFSTATTGAFSDSLGDRSNGNGAYP+PVGMEGVGPLGNGS+AADAAEALRRSSAPDLPR   NN KNPPLPRRRSLGDDPQARARRTAGRF S SSSSSSIAASSVLQAAEGAVAGAQSLSPLETFVPGAREVSGV                                          ATEQDTDAIRVALGAVREPVACMVEIVHSYKN HVVSEVFFSTMFRRRQKEADEAILSAERL+ A
Sbjct:  167 RYNEREVIPPSSSLSSANASRSVSLALMAAPFEGSSAWNASEPKREFDLEQGGGGDGXXXXXXXXXXXXXXXXXXXXXXX----------------CGYGTDGSRATTLGGSRMGPRFANPLYAFRVPPKRKLGHGTSTAGAAAVPAATASPSAAGDMDEDDYGAEVKEGGGTGFCVGGDASDNSGSIGGGAGCRVGVSPRKAVATTPAGGGGRSDGLDVGDEPATTELDQPIEGG---VAGGADFSTATTGAFSDSLGDRSNGNGAYPQPVGMEGVGPLGNGSDAADAAEALRRSSAPDLPRVRYNNDKNPPLPRRRSLGDDPQARARRTAGRFASASSSSSSIAASSVLQAAEGAVAGAQSLSPLETFVPGAREVSGV------------------------------------------ATEQDTDAIRVALGAVREPVACMVEIVHSYKNTHVVSEVFFSTMFRRRQKEADEAILSAERLVRA 592
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BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Match: A0A6H5KQ31_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ31_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.500e-63
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 3 
Query: 2019 QKARRRAVVAKAKRSAALARAEARQRQALCQELEYMKRLRGPRTVHTYGGVTALARDRMVLVMEFMPGGDLLLKLRKLRRPLEEGVLRQIVRDVCEGMTFLHSKAFVHGDLKSSNVLFDARGRAKV 2396
            QKARRRAVVAKAK+SAALARAEARQRQALCQELEYMKRLRGPRTVHTYGGVTALARDR+VLVMEFMPGGDLL KLRKLRRPLEEGVLRQIVRDVCEGM FLHSKAFVHGDLKSSNVLFDARGRAK+
Sbjct:  152 QKARRRAVVAKAKKSAALARAEARQRQALCQELEYMKRLRGPRTVHTYGGVTALARDRVVLVMEFMPGGDLLRKLRKLRRPLEEGVLRQIVRDVCEGMAFLHSKAFVHGDLKSSNVLFDARGRAKI 277
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BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Match: D8LTP7_ECTSI (Two component regulator three Y domain protein/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP7_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.060e-27
Identity = 70/103 (67.96%), Postives = 82/103 (79.61%), Query Frame = 3 
Query: 2088 RQRQALCQELEYMKRLRGPRTVHTYGGVTALARDRMVLVMEFMPGGDLLLKLRKLRRPLEEGVLRQIVRDVCEGMTFLHSKAFVHGDLKSSNVLFDARGRAKV 2396
            RQR+   +ELE MKRLRGP TV  YG VT+L  DR+VLVME + GGDL  +L+K + PLEE VLR+IVRDVC GM FLH+KA VHGDLKS+NVLFDA GRAK+
Sbjct:  632 RQRRMFMRELEAMKRLRGPHTVTIYGAVTSLP-DRLVLVMELLQGGDLRHRLKKAKEPLEEKVLRKIVRDVCCGMAFLHAKATVHGDLKSANVLFDATGRAKI 733
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BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Match: D8LTP4_ECTSI (Putative Leucine Rich Repeat Protein Kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP4_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.130e-27
Identity = 70/103 (67.96%), Postives = 82/103 (79.61%), Query Frame = 3 
Query: 2088 RQRQALCQELEYMKRLRGPRTVHTYGGVTALARDRMVLVMEFMPGGDLLLKLRKLRRPLEEGVLRQIVRDVCEGMTFLHSKAFVHGDLKSSNVLFDARGRAKV 2396
            RQR+   +ELE MKRLRGP TV  YG VT+L  DR+VLVME + GGDL  +L+K + PLEE VLR+IVRDVC GM FLH+KA VHGDLKS+NVLFDA GRAK+
Sbjct:  643 RQRRMFMRELEAMKRLRGPHTVTIYGAVTSLP-DRLVLVMELLQGGDLRHRLKKAKEPLEEKVLRKIVRDVCCGMAFLHAKATVHGDLKSANVLFDATGRAKI 744
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BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Match: A0A6H5JVI4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 4.390e-26
Identity = 69/103 (66.99%), Postives = 81/103 (78.64%), Query Frame = 3 
Query: 2088 RQRQALCQELEYMKRLRGPRTVHTYGGVTALARDRMVLVMEFMPGGDLLLKLRKLRRPLEEGVLRQIVRDVCEGMTFLHSKAFVHGDLKSSNVLFDARGRAKV 2396
            RQR+   +ELE MKRLRG  TV  YG VT+L  DR+VLVME + GGDL  +L+K + PLEE VLR+IVRDVC GM FLH+KA VHGDLKS+NVLFDA GRAK+
Sbjct:  855 RQRRMFMRELEAMKRLRGLHTVTIYGAVTSLP-DRLVLVMELLQGGDLRHRLKKAKEPLEEKVLRKIVRDVCCGMAFLHAKATVHGDLKSANVLFDATGRAKI 956
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BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.370e-23
Identity = 63/105 (60.00%), Postives = 75/105 (71.43%), Query Frame = 3 
Query: 2082 EARQRQALCQELEYMKRLRGPRTVHTYGGVTALARDRMVLVMEFMPGGDLLLKLRKLRRPLEEGVLRQIVRDVCEGMTFLHSKAFVHGDLKSSNVLFDARGRAKV 2396
            E RQR+   +ELE M RLR P TV+ YG VT+L+ DRMVLVME +P GDLL  LR+  +PL E   RQI+ D+C GM FLH K  VHGDLKS+NVL D  GRAK+
Sbjct:  869 ETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLS-DRMVLVMELLPNGDLLTLLRRSTKPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKI 972
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BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Match: D7FN19_ECTSI (Putative CTR1-like protein kinase/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN19_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 4.580e-23
Identity = 58/102 (56.86%), Postives = 77/102 (75.49%), Query Frame = 3 
Query: 2091 QRQALCQELEYMKRLRGPRTVHTYGGVTALARDRMVLVMEFMPGGDLLLKLRKLRRPLEEGVLRQIVRDVCEGMTFLHSKAFVHGDLKSSNVLFDARGRAKV 2396
            QR+A  +EL+ M RLR P TV+ YG +T+L  DR++LV+E +PGGDL   L+   +PL E   RQI++D+C GM FLHSK+ VHGDLKS+N+L DARGRAK+
Sbjct:  931 QRKAFLRELDAMIRLRHPHTVNVYGAITSLP-DRLILVLELLPGGDLRTMLKNSEQPLPEEQSRQIIKDICAGMAFLHSKSTVHGDLKSANILLDARGRAKI 1031
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BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 5.690e-23
Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 3 
Query: 2082 EARQRQALCQELEYMKRLRGPRTVHTYGGVTALARDRMVLVMEFMPGGDLLLKLRKLRRPLEEGVLRQIVRDVCEGMTFLHSKAFVHGDLKSSNVLFDARGRAKV 2396
            E RQR+   +ELE M RLR P TV+ YG VT+L+ DRMVLVME +P GDLL  LR+   PL E   RQI+ D+C GM FLH K  VHGDLKS+NVL D  GRAK+
Sbjct:  844 ETRQRKGFLRELEAMIRLRSPNTVNVYGAVTSLS-DRMVLVMELLPNGDLLTLLRRSTNPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKI 947
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Match: D8LH32_ECTSI (Leucine rich repeat tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH32_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 7.630e-23
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 3 
Query: 2091 QRQALCQELEYMKRLRGPRTVHTYGGVTALARDRMVLVMEFMPGGDLLLKLRKLRRPLEEGVLRQIVRDVCEGMTFLHSKAFVHGDLKSSNVLFDARGRAKV 2396
            +R+A  +EL+ M RLR P TV+ YG +T+L  DR+VLVME + GGDL   L+   +PL E   RQI++DVC GM FLHSKA VHGDLKS+NVL D RGRAK+
Sbjct:  869 ERKAFLRELDAMVRLRNPHTVNVYGAITSLP-DRLVLVMELLAGGDLRAMLKNSEQPLPEDKCRQIIQDVCAGMAFLHSKATVHGDLKSANVLLDGRGRAKI 969
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10571.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI21_ECTSI4.070e-26192.03Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5L241_9PHAE4.880e-21080.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ31_9PHAE1.500e-6396.03Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LTP7_ECTSI2.060e-2767.96Two component regulator three Y domain protein/ le... [more]
D8LTP4_ECTSI2.130e-2767.96Putative Leucine Rich Repeat Protein Kinase (Parti... [more]
A0A6H5JVI4_9PHAE4.390e-2666.99Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KF25_9PHAE3.370e-2360.00Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FN19_ECTSI4.580e-2356.86Putative CTR1-like protein kinase/ leucine rich re... [more]
D7G7X7_ECTSI5.690e-2360.00ATP binding / amino acid binding / protein kinase/... [more]
D8LH32_ECTSI7.630e-2358.82Leucine rich repeat tyrosine kinase n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10571contigEcto-sp8_S_contig10571:637..5759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score768.1
Seed ortholog evalue2.7e-219
Seed eggNOG ortholog2880.D8LI21
Preferred namemlk-1
Model size2396
KEGG koko:K04417
KEGG Pathwayko04013,map04013
KEGG ModuleM00688,M00689
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000187,GO:0001558,GO:0001932,GO:0001934,GO:0003674,GO:0005080,GO:0005102,GO:0005488,GO:0005515,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008361,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010259,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0016043,GO:0016310,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022603,GO:0022604,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030154,GO:0030182,GO:0030307,GO:0030516,GO:0030971,GO:0031099,GO:0031102,GO:0031103,GO:0031175,GO:0031323,GO:0031325,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0031667,GO:0032101,GO:0032103,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032535,GO:0033554,GO:0033674,GO:0035556,GO:0036211,GO:0040008,GO:0042221,GO:0042325,GO:0042327,GO:0042594,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045859,GO:0045860,GO:0045927,GO:0045937,GO:0046688,GO:0048468,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048638,GO:0048639,GO:0048666,GO:0048678,GO:0048679,GO:0048680,GO:0048686,GO:0048687,GO:0048690,GO:0048691,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050829,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0061387,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070570,GO:0070572,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0097110,GO:0098542,GO:0120035,GO:0120036,GO:1901564,GO:1902531,GO:1902533,GO:1903034,GO:1903036,GO:1903616,GO:1990782,GO:2000026
Exons7
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionProtein kinase
Ec32 orthologEc-04_002930.1
EC2.7.11.25
Cds size1584
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10571.897.1prot_Ecto-sp8_S_contig10571.897.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10571 637..3467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.199002-CDS-Ecto-sp8_S_contig10571:636..19771681143155.199002-CDS-Ecto-sp8_S_contig10571:636..1977Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10571 637..1977 +
1681143155.2106524-CDS-Ecto-sp8_S_contig10571:2556..27421681143155.2106524-CDS-Ecto-sp8_S_contig10571:2556..2742Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10571 2557..2742 +
1681143155.2194295-CDS-Ecto-sp8_S_contig10571:3410..34671681143155.2194295-CDS-Ecto-sp8_S_contig10571:3410..3467Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10571 3411..3467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143155.23106-UTR-Ecto-sp8_S_contig10571:3467..35391681143155.23106-UTR-Ecto-sp8_S_contig10571:3467..3539Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10571 3468..3539 +
1681143155.2403448-UTR-Ecto-sp8_S_contig10571:3756..38971681143155.2403448-UTR-Ecto-sp8_S_contig10571:3756..3897Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10571 3757..3897 +
1681143155.2492247-UTR-Ecto-sp8_S_contig10571:4108..43321681143155.2492247-UTR-Ecto-sp8_S_contig10571:4108..4332Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10571 4109..4332 +
1681143155.2647638-UTR-Ecto-sp8_S_contig10571:4909..50801681143155.2647638-UTR-Ecto-sp8_S_contig10571:4909..5080Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10571 4910..5080 +
1681143155.2732139-UTR-Ecto-sp8_S_contig10571:5555..57591681143155.2732139-UTR-Ecto-sp8_S_contig10571:5555..5759Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10571 5556..5759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10571.897.1

>prot_Ecto-sp8_S_contig10571.897.1 ID=prot_Ecto-sp8_S_contig10571.897.1|Name=mRNA_Ecto-sp8_S_contig10571.897.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=528bp
MRVGGGGDSGGGGGSGNGSGGGAGAGAGGGRYNEREVIPPSSSLSSANAS
RSVSLALMAAPFEGSTAWNASEPKREFDLEQGGGGGGGDGGGGGDGGGNG
DRGNGGGGGGGGGGGGGGGGGGGGGECGYGTDGSRATTLGGSRMGPRFAN
PLYAFRVPPKGELGHGTSTAAVAAATASPSAAGDMDEDDYGAEVKEGGGT
GFCVGGDARDNSGIGGGAGCRVGVSPRKAVATTSAGGGGRSDGLDGGDEP
TTTEHDQHNEGNEGGVAGGADFSTATTGAFSDSLGDRSNGNGAYPRPVGM
EGVGPLGNGSEAADAAEALRRSSAPDLPRASGNNGKNPPLPRRRSLGDDP
QARARRTAGRFTSSSSSSSIAASSVLQAAEGAVAGAQSLSPLETFVPGAR
EVSGVVAGLARLAAASHKGDPKDKRRRVRWCRSVVLTLERALSVLGKATE
QDTDAIRVALGAVREPVACMVEIVHSYKNKHVVSEVFFSTMFRRRQKEAD
EAILSAERLLSARQDNSESQRKTSEVR*
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mRNA from alignment at Ecto-sp8_S_contig10571:637..5759+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10571.897.1 ID=mRNA_Ecto-sp8_S_contig10571.897.1|Name=mRNA_Ecto-sp8_S_contig10571.897.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5123bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10571:637..5759+ (Ectocarpus species8 EcLAC_412)
ATGCGCGTCGGCGGTGGCGGCGACAGCGGCGGCGGCGGCGGCAGCGGCAA
CGGTAGCGGGGGGGGCGCCGGCGCCGGCGCAGGCGGCGGGCGCTACAACG
AGCGGGAGGTGATCCCGCCTTCCTCCTCCCTCTCTTCTGCCAACGCCTCG
CGGTCGGTCTCGCTCGCCCTCATGGCGGCACCGTTTGAGGGGAGCACCGC
CTGGAACGCCTCCGAACCTAAGCGGGAGTTCGACTTGGAACAAGGCGGCG
GCGGCGGCGGTGGCGACGGCGGTGGCGGCGGTGACGGCGGCGGCAACGGT
GACCGCGGTAACGGTGGCGGCGGCGGAGGCGGAGGCGGAGGCGGAGGCGG
AGGCGGAGGAGGAGGAGGAGGCGGCGAATGCGGCTACGGTACCGACGGCA
GCAGAGCCACAACACTCGGTGGGAGCAGGATGGGCCCGCGCTTTGCGAAC
CCTCTGTATGCTTTCCGGGTTCCTCCTAAGGGGGAGCTGGGACACGGGAC
GTCGACGGCGGCGGTGGCGGCGGCTACGGCGAGCCCTAGCGCCGCCGGCG
ACATGGACGAGGACGACTACGGGGCGGAGGTGAAGGAGGGCGGGGGCACG
GGTTTCTGCGTGGGCGGCGATGCTCGCGACAACAGCGGCATCGGGGGCGG
TGCCGGTTGCCGGGTCGGGGTTTCCCCGCGGAAGGCGGTTGCTACGACGT
CGGCGGGCGGTGGCGGAAGGAGCGACGGCCTCGACGGCGGGGACGAACCG
ACAACAACCGAGCACGACCAGCACAACGAAGGCAACGAAGGTGGTGTTGC
CGGAGGAGCGGACTTCAGCACGGCTACGACCGGCGCCTTCAGCGACAGCC
TCGGCGACCGGAGCAACGGCAACGGGGCGTACCCGCGGCCCGTGGGCATG
GAAGGGGTCGGGCCGCTAGGGAACGGTAGCGAAGCGGCCGACGCCGCCGA
GGCGTTACGACGGTCGTCCGCGCCCGACCTCCCGCGCGCGAGCGGCAACA
ACGGCAAGAACCCTCCCCTTCCCCGGCGCCGGTCGCTGGGAGACGACCCC
CAGGCCCGAGCCAGGCGTACGGCCGGCCGCTTCACCTCCTCCTCCTCCTC
GTCCTCCATCGCCGCGTCTTCCGTGCTCCAGGCGGCGGAGGGAGCCGTTG
CGGGGGCGCAGTCTCTCTCCCCGCTGGAGACGTTCGTGCCCGGAGCACGG
GAAGTGTCCGGCGTGGTCGCCGGGCTCGCCAGGCTGGCAGCCGCGAGCCA
CAAGGGCGACCCTAAGGATAAGCGGCGCAGGGTCCGGTGGTGCCGGTCGG
TGGTGCTCACTCTGGAGCGGGCCCTGTCGGTGCTCGGAAAGGTGAGAGGC
GGAGGGGGAAGGGGGGGGGTTGTTGGTGGAGAACTGGTGAAAGTAGGAGC
AGGCGGGGGGGGAGGGAGGAGGTATTACAACTGATTTCCTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCCTCCACCACCTTGGCCGG
CCTTGTCTCTACGCGCTTGTACCTCCGAATGTTCACAAGCCTAGGGTTTT
TTTAAGGGCATTATAAGCCGAGGGTTGTATGTTTCTCCGTTGTGTACTAA
TAATAGGACTAATTCGAAGTTTTTTTTTTGTGTTTGTCGGCTACGTACAT
GTGTCCGATAAATTCTGCAGGCCACGGAGAATACTATTTAGGGCTTTATG
TTTCTCCTTTGCCCAACTTTTTTTTTGCTTTTTTTTTGTCATCTTTGTGG
ATACATACGTCCGACCAAGTTCTACAGTCAACGTAGAACATCAATCAACG
CAAAATCCCAGGTTCATGCATGCTGCGCATGTTTCGCCTTTGTTTCTAAA
CTTTGTTTGCTCAATTTTATTGCTGGCTATGTATGCATACACTACACATG
TCCGATCAAATAATCTGCAGGCGACGGAGCAGGACACCGATGCAATACGC
GTCGCTCTCGGGGCGGTGCGGGAGCCCGTTGCGTGCATGGTGGAGATCGT
GCACTCGTACAAAAACAAGCACGTCGTGTCGGAGGTGTTCTTCTCGACCA
TGTTCCGCCGGCGCCAGAAGGAGGCCGACGAGGCGATCCTGTCAGCCGAA
CGCCTTGTGAGAGCAAACCTTTGTTATACTATTATCGTGTTTTTTTTTCC
CTTTGCGTGTTGATGCCTTCCCCCGATTGTCTTGCGACCGACGCCATGGC
AGGTACACGCTTGATCCTTTTTCTGCCTCTTTTTTTGCCTTGTTTTTTGT
CTCTTGCCTTTTTTCTCCTTGATTTCGTGTGTGTTAAAAATTTCCTCCCA
TTTTTTCCCACCGACGGCATGACAGGTAGCTTCTTGTTCGATACGCACAC
ACTGTAGCTGAGTTATCTGGGCGGGTATATTTTTTGGTGCAGTTGTTGCA
TCTCACGACAAACCCAGAGAGTTGATAGATAGGACCACCTGGCCTCTGCT
ACCTTCTGGCCTCAAGCGCAGCAGTTCTTGGACAAGACAAGACAAGACGG
GACAAGATGTTTTTTGAGGTCTGAGCGGCCTCGCGGTGCCACTGCTGCCC
GACGCAACAACAACAACAGCTGTACAATGGCCACAAGTACGGGGATATAC
AGTATGTCGACCAACCCGAATTCGCCGTCGTGCGAAGTCTCCAGGGGCGT
TTGCGGGTCAACGGTCTAACAACGACGGCATGCGTTTACATGAGTACCCC
CCCTCCCTCGCTGCCCGCCGTGTTTTTTTTCGTGCCGATGGTGATGTCAA
ATAACGCACGACAACGAACGACAGCTGTCCGCTCGGCAGGATAACTCCGA
GAGCCAAAGGAAAACCTCGGAGGTGAGATAGGTCACCAACACCAACACCA
ACACCACCGGCAGGCTAATAGTGCTGTCAGCTCAGAAGGGTTTCCGGGTG
CATGTTTTGTCTACTGCAGGGGGTAAACACACACACACACACACACACAC
GTGTGAGAATGATTTTTTTCGAGTTTGGGTCCCTTCCAATGACCTTGAGT
TTGCTTACCCGCTGGCACTGACGTCTTTTCATTGGTCAGCCGCTTAGTGC
CGTCGATGCTAGAAATAACAATGCACACTCATGCCTGCAAACGGCGTACA
ATTCCATCTCGAACGGACAGTCTTTTTTTTTTTTTTTGGTGTTGTGGATG
GCAAGGTAGCTTGTGGTAGTGTTCTTAGATGCTGTGAAGGGGGTTCGAAA
TCATCGTGGGGCAGCTTGGTTGGTTTTTGCGGATATACGGCGATCGAGAA
CCCGAACGCAGGTCTTGTTGGCGAGGTGCTACACACTACGCCGCTTCCGC
CTCTCTTGTTTTTTTTTTATTTTGCTGTTTTTCGTGTGGCAACGAACCCC
TCCTCATCCTGACGTCCAAGCGGCAGGATCGCGTTAAGCCCAGCGTGTCC
ACACACCGCTTGTGATAATCGAACAATCCATGGTTGTCTCATTGCGCTAG
GCTCAGCCCAGGAGCGAAAAAGAGCCAACAAAAACCCACCCAGCGTGTGT
CCAAGCCACCGCTCGTGATGAACAAACAATCCATGGTTGTCTCACCGCGC
TAGGCTCAGCCCAGGAGGGAAAAATAACCAAAAATAACCCACCAGCGTGT
GTCCAAGCCACCGCTCGTGATGAACGAACGCTGCATAGTTATTGTATCCC
CACTCTTTTACGCGTTGTGGGAATGTTTTGCCTGTATCGTCCGCAGGTGA
TTCTTGCGAAGGCCGAGCGGAAGCGGAGACACCGGCAGACGGTTCTCCTG
GACGAGGTGGACATCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCGGACCAGAAGGCGAGGAGGAGGGCGGTCGTGGCG
AAGGCTAAGAGGTCCGCAGCTCTGGCCAGGGCGGAGGCGCGGCAGCGGCA
GGCGCTCTGCCAGGAGCTGGAGTACATGAAGCGGCTCAGGGGCCCCCGCA
CGGTGCACACGTACGGGGGGGTGACCGCGCTCGCGAGGGACCGGGTGCGT
ACGTACGTGTGTGATGTATGGATTCGAGATTCTCATGGGATGCTCTGGGT
CTGTTCGGCCGTACATCGAATCAAACGAGAATCAACCCACTTCCATGGTC
CATATTTCTTGTTTCGCCTCCTCCCGTATCGTAGGCAAATTTTGTGTTGT
CCGCCATCGAAGTACGCCACGAAAATCGGAAGGTAAACACCTTTCCCGTG
GACCATCTCCCGTACCTTCTCTTGCTTTTTGTACCCTCTTTCGTGGTTCG
TTGGACCTCCCCTTTTCGACACATCCCTCCGTGTAGTTTCTAACGATCGC
CGTGTGCTTACGCGTACGCATCGAACTTGGGGTGGAAAACCGAGTGTGCA
TGAGGAAACCAAAGCACACCTCATCTTGGTAGCAGACGGCGGCCGTCCTC
TCTTGTCAAGCGTCTGTGTGGCGGGTTTTATTTTAGCCTTTTGCTCTTGT
ACCTTGCCACGATTCCCAGATGGTGCTGGTGATGGAATTCATGCCCGGGG
GTGACCTGCTGCTGAAGCTGAGGAAGCTCAGGAGGCCATTGGAGGAGGGG
GTCTTGAGGCAGATCGTGAGGGATGTTTGCGAGGGGATGACGTTCTTGCA
CAGCAAGGCGTTCGTGCACGGGGACCTCAAGTCGTCGAACGTCCTATTCG
ACGCCAGGGGGAGGGCGAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10571:637..5759+

>mRNA_Ecto-sp8_S_contig10571.897.1 ID=mRNA_Ecto-sp8_S_contig10571.897.1|Name=mRNA_Ecto-sp8_S_contig10571.897.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1584bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10571:637..5759+ (Ectocarpus species8 EcLAC_412)
ATGCGCGTCGGCGGTGGCGGCGACAGCGGCGGCGGCGGCGGCAGCGGCAA
CGGTAGCGGGGGGGGCGCCGGCGCCGGCGCAGGCGGCGGGCGCTACAACG
AGCGGGAGGTGATCCCGCCTTCCTCCTCCCTCTCTTCTGCCAACGCCTCG
CGGTCGGTCTCGCTCGCCCTCATGGCGGCACCGTTTGAGGGGAGCACCGC
CTGGAACGCCTCCGAACCTAAGCGGGAGTTCGACTTGGAACAAGGCGGCG
GCGGCGGCGGTGGCGACGGCGGTGGCGGCGGTGACGGCGGCGGCAACGGT
GACCGCGGTAACGGTGGCGGCGGCGGAGGCGGAGGCGGAGGCGGAGGCGG
AGGCGGAGGAGGAGGAGGAGGCGGCGAATGCGGCTACGGTACCGACGGCA
GCAGAGCCACAACACTCGGTGGGAGCAGGATGGGCCCGCGCTTTGCGAAC
CCTCTGTATGCTTTCCGGGTTCCTCCTAAGGGGGAGCTGGGACACGGGAC
GTCGACGGCGGCGGTGGCGGCGGCTACGGCGAGCCCTAGCGCCGCCGGCG
ACATGGACGAGGACGACTACGGGGCGGAGGTGAAGGAGGGCGGGGGCACG
GGTTTCTGCGTGGGCGGCGATGCTCGCGACAACAGCGGCATCGGGGGCGG
TGCCGGTTGCCGGGTCGGGGTTTCCCCGCGGAAGGCGGTTGCTACGACGT
CGGCGGGCGGTGGCGGAAGGAGCGACGGCCTCGACGGCGGGGACGAACCG
ACAACAACCGAGCACGACCAGCACAACGAAGGCAACGAAGGTGGTGTTGC
CGGAGGAGCGGACTTCAGCACGGCTACGACCGGCGCCTTCAGCGACAGCC
TCGGCGACCGGAGCAACGGCAACGGGGCGTACCCGCGGCCCGTGGGCATG
GAAGGGGTCGGGCCGCTAGGGAACGGTAGCGAAGCGGCCGACGCCGCCGA
GGCGTTACGACGGTCGTCCGCGCCCGACCTCCCGCGCGCGAGCGGCAACA
ACGGCAAGAACCCTCCCCTTCCCCGGCGCCGGTCGCTGGGAGACGACCCC
CAGGCCCGAGCCAGGCGTACGGCCGGCCGCTTCACCTCCTCCTCCTCCTC
GTCCTCCATCGCCGCGTCTTCCGTGCTCCAGGCGGCGGAGGGAGCCGTTG
CGGGGGCGCAGTCTCTCTCCCCGCTGGAGACGTTCGTGCCCGGAGCACGG
GAAGTGTCCGGCGTGGTCGCCGGGCTCGCCAGGCTGGCAGCCGCGAGCCA
CAAGGGCGACCCTAAGGATAAGCGGCGCAGGGTCCGGTGGTGCCGGTCGG
TGGTGCTCACTCTGGAGCGGGCCCTGTCGGTGCTCGGAAAGGCGACGGAG
CAGGACACCGATGCAATACGCGTCGCTCTCGGGGCGGTGCGGGAGCCCGT
TGCGTGCATGGTGGAGATCGTGCACTCGTACAAAAACAAGCACGTCGTGT
CGGAGGTGTTCTTCTCGACCATGTTCCGCCGGCGCCAGAAGGAGGCCGAC
GAGGCGATCCTGTCAGCCGAACGCCTTCTGTCCGCTCGGCAGGATAACTC
CGAGAGCCAAAGGAAAACCTCGGAGGTGAGATAG
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