mRNA_Ecto-sp8_S_contig105679.890.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig105679.890.1
Unique NamemRNA_Ecto-sp8_S_contig105679.890.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105679.890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig105679contigEcto-sp8_S_contig105679:49..450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size402
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_005140.1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143154.7053995-UTR-Ecto-sp8_S_contig105679:48..791681143154.7053995-UTR-Ecto-sp8_S_contig105679:48..79Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig105679 49..79 +
1681143154.7240946-UTR-Ecto-sp8_S_contig105679:391..4501681143154.7240946-UTR-Ecto-sp8_S_contig105679:391..450Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig105679 392..450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143154.7165124-CDS-Ecto-sp8_S_contig105679:79..3911681143154.7165124-CDS-Ecto-sp8_S_contig105679:79..391Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105679 80..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig105679.890.1prot_Ecto-sp8_S_contig105679.890.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig105679 80..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig105679.890.1

>prot_Ecto-sp8_S_contig105679.890.1 ID=prot_Ecto-sp8_S_contig105679.890.1|Name=mRNA_Ecto-sp8_S_contig105679.890.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=104bp
MGVIRFHTHTHTHAHARTRLYGTGRLFSWGCHIEKGRNYASKGRAKEVGG
KVFFASFGLSCMHIVACFSRTMYRSIIHQGRSTCGGAGPRYFPFALVFLI
MIS*
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mRNA from alignment at Ecto-sp8_S_contig105679:49..450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig105679.890.1 ID=mRNA_Ecto-sp8_S_contig105679.890.1|Name=mRNA_Ecto-sp8_S_contig105679.890.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=402bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105679:49..450+ (Ectocarpus species8 EcLAC_412)
CTGTCTGTAGTCTTGGTGCTGCTCGAAGGAGATGGGTGTCATCAGGTTCC
ACACACACACACACACACACGCACACGCGCGCACGCGTTTGTACGGAACC
GGGAGGTTGTTCAGTTGGGGATGCCACATCGAAAAAGGAAGGAATTACGC
GAGCAAGGGGCGGGCAAAGGAGGTGGGAGGGAAGGTTTTCTTTGCTTCTT
TTGGTTTAAGTTGTATGCATATCGTGGCTTGTTTTTCTCGAACAATGTAC
CGTAGTATTATTCACCAAGGGCGCTCAACTTGTGGAGGCGCTGGCCCCAG
GTATTTTCCGTTTGCCTTGGTTTTTCTCATCATGATCTCATGATTGCGAT
CTTGGAAACCCTGTCTGTCGCCCGAGGGGGGGGTGTCGCCAAATGGGAAG
GG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105679:49..450+

>mRNA_Ecto-sp8_S_contig105679.890.1 ID=mRNA_Ecto-sp8_S_contig105679.890.1|Name=mRNA_Ecto-sp8_S_contig105679.890.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105679:49..450+ (Ectocarpus species8 EcLAC_412)
ATGGGTGTCATCAGGTTCCACACACACACACACACACACGCACACGCGCG
CACGCGTTTGTACGGAACCGGGAGGTTGTTCAGTTGGGGATGCCACATCG
AAAAAGGAAGGAATTACGCGAGCAAGGGGCGGGCAAAGGAGGTGGGAGGG
AAGGTTTTCTTTGCTTCTTTTGGTTTAAGTTGTATGCATATCGTGGCTTG
TTTTTCTCGAACAATGTACCGTAGTATTATTCACCAAGGGCGCTCAACTT
GTGGAGGCGCTGGCCCCAGGTATTTTCCGTTTGCCTTGGTTTTTCTCATC
ATGATCTCATGA
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