mRNA_Ecto-sp8_S_contig10515.811.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI) HSP 1 Score: 369 bits (948), Expect = 7.840e-126 Identity = 196/230 (85.22%), Postives = 203/230 (88.26%), Query Frame = 1
Query: 1 MDLIESMDGATIRVDKDTKKGSVMDTIRLVLKCSSGTASTYLNGLFSTSLELTNHVCHIRMNGKGKITPVADAKTLIEIVWLLPGNKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGHEEAVETFDGMPTGFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVVNDAVAVDT 690
MDLIESMDGATIR DK TKKGSVMDTIR+VL+C S A+T L EL + ++NGKG TPVADAKTLIEIVWLLPG KAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHG EEAVETFDGMP GFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTV +DAVAV T
Sbjct: 1 MDLIESMDGATIRADKQTKKGSVMDTIRMVLRCDSSNANTAFGRLLQAHPELGSRCTRSKLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGREEAVETFDGMPAGFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVEDDAVAVAT 230
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE) HSP 1 Score: 305 bits (782), Expect = 2.430e-92 Identity = 164/228 (71.93%), Postives = 186/228 (81.58%), Query Frame = 1
Query: 1 MDLIESMDGATIRVDKDTKKGSVMDTIRLVLKCSSGTASTYLNGLFSTSLELTNHVCHIRMNGKGKITPVADAKTLIEIVWLLPGNKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGHEEAVETFDGMPTGFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVVNDAVAV 684
MDLIE+M GATIRVDK+ + GSV+DTIR+VL S A+T LN L + EL +R+NGKGK TPVADAKTLIEIVWLLPG KA FRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGR TQEFLL EEAVETFDGMP GF+YL DRAQ AK+M++ L+ ALKRKRVDD+V SYRA+QD+GV LDGRTLIELRD+VTILSRQ+ +VN+AVA+
Sbjct: 898 MDLIENMHGATIRVDKNEQVGSVIDTIRMVLGGDSSAANTSLNRLILANEELGTRCTQLRINGKGKFTPVADAKTLIEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLLGEREEAVETFDGMPAGFRYLPVEDRAQFAKQMLELNLEMSKVALKRKRVDDMVQSYRALQDLGVLLDGRTLIELRDNVTILSRQDVMVNNAVAI 1125
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Match: B5LWG1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG1_9PHYC) HSP 1 Score: 202 bits (514), Expect = 6.060e-60 Identity = 120/262 (45.80%), Postives = 166/262 (63.36%), Query Frame = 1
Query: 22 DGATIRVDKDTKKGSVMDTIRLVLKCSSGTASTYLNGLFSTSLELTNHVCHIRMNGKGKITPVADAKTLIEIVWLLPGNKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLH-GHEE----------AVETFDGMPTGFKYLSETDRAQVAKRMIDQQLKA-------GDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVVNDAVAVDTRSCRT---PTPQHTSLPRRRG 744
D +IR D TKKGSV+D IR VL CSS A+T L+ L + +L N++ H ++NGKGK TPVADAKTL+EI++LLPG KA FRR+S+EKVCRL+GGD+SLV EIE R L+ST +GR TQ FLL+ G E ++ ++GMP GF +L +D+ +VAK ++ Q L KR+R +D+V Y+ + DIGV+LD RT IE+RD+V++L++++ + + DT C TP HT RG
Sbjct: 9 DNFSIRADATTKKGSVIDVIRSVLGCSSSAANTNLSNLKTRFSDLGNNIAHAQINGKGKSTPVADAKTLVEIIFLLPGQKACKFRRKSAEKVCRLMGGDMSLVVEIEQRCTALESTPEGRATQAFLLNPGSSENSSSAPCASAQLKKYEGMPAGFSFLDPSDQCKVAKEVVQQALDGRKXXXXXXXXXXKRQRCEDMVGRYKTLMDIGVKLDDRTKIEIRDNVSLLTKRDLALEGSQ--DTEICAPIDPTTPTHTLCAGERG 268
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC) HSP 1 Score: 193 bits (491), Expect = 9.510e-57 Identity = 105/243 (43.21%), Postives = 159/243 (65.43%), Query Frame = 1
Query: 7 LIESMDGATIRVDKDTKKGSVMDTIRLVLKCSSGTASTYLNGLFSTSL----ELTNHVCHIRMNGKGKITPVADAKTLIEIVWLLPGNKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLL-HGHEEAVETFDGMPTGFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVVNDAVAVDTRSCRTPTPQH 720
+++++ ATIR+D T+KGSV+D IR+VL+C + +A+T L L E H+R+NGKG++TPVA+AKTL+EI++ LPG A FRR+S+ ++CRLLGGD +LV EIE R A L+ST +GR TQ FLL + + F GMP GF+YL E+ R VA ++ ALKR+R++D++ SY +++ +GV LD RT++E+RD+V++L+++ + + TR TP H
Sbjct: 4 IVDNVVNATIRIDNATQKGSVIDVIRMVLRCDASSANTAFRRLKDDMLKSRAEFGAACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTDDDFTGMPVGFRYLEESQRRAVAGEVVAL-------ALKRQRIEDMIGSYASLRSLGVELDPRTMVEIRDNVSLLTKRKLSIEEREDSTTRLVDPKTPTH 239
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Match: B5LWF8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF8_9PHYC) HSP 1 Score: 190 bits (483), Expect = 1.210e-56 Identity = 101/227 (44.49%), Postives = 157/227 (69.16%), Query Frame = 1
Query: 7 LIESMDGATIRVDKDTKKGSVMDTIRLVLKCSSGTASTYLNGLFSTSLELTNHVCHIRMNGKGKITPVADAKTLIEIVWLLPGNKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGHEEA------------VETFDGMPTGFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSR 651
++ +M+ ++IRVDK +KKGSV+DT+++VL C+S + +T L L + +L + +R+NGKG TPVADAK L+++V LLPG KA FRR+S++ VCRLLGGD+SLV EIE R ATLQ + +GR Q+ LL G +A ++ ++GMP GF++L +D+ +VAK ++ Q L QALKR+R +D+V +++ DIGV LD +T ++RD++++L++
Sbjct: 4 IVRNMESSSIRVDKASKKGSVIDTVKMVLGCTSSSGNTNLRRLTTRFPDLCVDITRLRINGKGMATPVADAKLLVQVVLLLPGQKAIEFRRKSADVVCRLLGGDMSLVKEIEQRCATLQRSPEGRVIQDILL-GDGDADRSVVTSSTSSQIDKYEGMPAGFRFLDASDQHRVAKEVVKQALDCKKQALKRRRCEDMVDQCKSLSDIGVDLDNQTKKDIRDNLSLLTK 229
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC) HSP 1 Score: 176 bits (446), Expect = 1.820e-49 Identity = 109/245 (44.49%), Postives = 148/245 (60.41%), Query Frame = 1
Query: 1 MDLIESMDGATIRVDKDTKKGSVMDTIRLVLKCSSGTASTYLNGLFSTSLELTNHVCHIRMNGKGKITPVADAKTLIEIVWLLPGNKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGHEEAVETFDGM--------PTGFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQ---------NTVVNDAVAV 684
MDLIESMDG+TIRVDK+TK GSV+DTIR+VL+C S A+T L L + L +++NG+GK TPVADAKTLIEIVWLLPG +AH+FR Q K+CRLLGGD SLVSEIEARHATL TE+GR TQEF L+ + ++ D + P+ FK + ++ A M+++ A+ + V+ ++ +G + R +IE D V R+ +T V+D V +
Sbjct: 19 MDLIESMDGSTIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATLTGTEEGRATQEFFLNDNHVTIDQPDQVKELRSGEEPSWFKNATAEEKRAFASTMVNK-------AIVSEEVEMYDFCKAKLESVG-QFTTRDMIEFGDRVRDAQRRALRAGNMMTSTPVDDTVVI 255
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Match: A0A835YYW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW8_9STRA) HSP 1 Score: 154 bits (390), Expect = 8.880e-42 Identity = 96/212 (45.28%), Postives = 125/212 (58.96%), Query Frame = 1
Query: 31 TIRVDKDTKKGSVMDTIRLVL-KCSSGTASTYLNGLFSTSLELTNHVCHIRMNGKGKITPVADAKTLIEIVWLLPGNKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLH-----GHEEAVETFDGMPTGFKYLSETDRAQVAKRMIDQQL----KAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSV 636
+IRVD + KGSV+D IRLV+ S AST L S ++ + CH+R+NGKGK TP ADAKTL+EIVW LPG A FRR+S+ VCRLLGGDLSLV EIE+RH LQ TE G Q FL+ +E+ MP GF +L ET + QVA M+ +L +A D R++ D + R++Q+ + LD I L D +
Sbjct: 9 SIRVDSASNKGSVIDVIRLVIPNLPSNQASTTFARLASEMPDVASSCCHLRINGKGKPTPCADAKTLVEIVWSLPGKAARDFRRESANTVCRLLGGDLSLVQEIESRHHALQKTEGGHAVQGFLMSDTLSAASQESDTQLALMPAGFAFLDETSKQQVALSMVHDELAKRKRADDAEWHRRKFADTTYFMRSLQEQHI-LDPNLRIALIDQL 219
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Match: UPI0000161E55 (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E55) HSP 1 Score: 151 bits (381), Expect = 1.630e-41 Identity = 86/142 (60.56%), Postives = 108/142 (76.06%), Query Frame = 1
Query: 319 LSLVSEIEARHATLQSTEQGRETQEFLLHGHEE--AVETFDGMPTGFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVVNDAVAVDTRSCRTPTP--QHTSLP 732
+SLVSEIEARH +LQSTE+GR TQ FLL G EE A+++F+GMP FKY+ DR +AKRMI+QQL+ ALKR+RVD+L+ SY++++DIGV LDGRTLIEL D+VTILSRQ+ VV+DAV TPTP Q +S P
Sbjct: 1 MSLVSEIEARHNSLQSTEEGRATQSFLLDGREEVEAIDSFEGMPPAFKYIDAKDRGDLAKRMIEQQLQESTVALKRQRVDNLIQSYKSLRDIGVNLDGRTLIELCDNVTILSRQDLVVSDAVP-------TPTPLLQDSSTP 135
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA) HSP 1 Score: 150 bits (379), Expect = 4.060e-40 Identity = 95/235 (40.43%), Postives = 128/235 (54.47%), Query Frame = 1
Query: 28 ATIRVDKDTKKGSVMDTIRLVLKCSSGTASTYLNGLFST-SLELTNHVCHIRMNGKGKITPVADAKTLIEIVWLLPGNKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGHEEAV--ETFDGMPTGFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSV--TILSRQNTVVNDAVAVDTRSCRTPTPQ 717
A IRVD T KGSV+D I++V C++ ASTY L +L +R+N KG++TP ADAKTL+EIVW LPG A FRRQS+ VCR+LGGDLS+V E+EARH LQ TE GR Q+FLL E +V E G+P +ET ++ + + ++ A K+ R V Y ++ +G D R I D+V + V +A A+ PTPQ
Sbjct: 8 AAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMREEAAI---ATKKARAQFAVEGYELLRSMGA-ADHRDCITFSDAVRRAVTDGGGAAVVEARALAADDPTIPTPQ 238
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Match: Q6XM54_9PHYC (FirrV-1-A33 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM54_9PHYC) HSP 1 Score: 140 bits (352), Expect = 4.840e-35 Identity = 94/263 (35.74%), Postives = 145/263 (55.13%), Query Frame = 1
Query: 31 TIRVDKDTKKGSVMDTIRLVL-KCSSGTASTYLNGLFSTS----------------LELTNHVCHIRMNGKGKITPVADAKTLIEIVWLLPGNKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGHEEAVETFDGMPTGFKYLSETDRAQVAKRM-------IDQQLKAGDQALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVVNDAVAVDTRSCRTP-TPQHTSLPRRRG 744
+IRVD++++ GSV+D I+L+ + S A L+ L L L+ V I++NG+G++TPVADAKTLI I+WLLPG FR QS+E + R+LGGDL L EI+ + A LQ T +GR Q+F+ A + F++L + R ++A++ I Q+ +A +Q LK+K + D++ Y+++++I V +D RT +E+RD V+IL+RQ + C P TP H RRG
Sbjct: 121 SIRVDEESRMGSVIDVIKLICPEKSEFHAYKTLSNLIDDDDKCIGNKFKSDDSTIPLRLSERVKKIQINGRGRVTPVADAKTLIYIIWLLPGRAVAHFRAQSAEIIARVLGGDLRLAQEIQQQCAKLQETPEGRAFQDFM------APDAKKQKMDMFEFLGPSKRVEIAEQFYAEKLKAIQQERQAKEQELKKKSITDIIDVYQSLKNIDVEIDDRTKVEIRDKVSILTRQMEGQGSHASPPLLLCEDPSTPTHVLDAERRG 377 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10515.811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10515.811.1 >prot_Ecto-sp8_S_contig10515.811.1 ID=prot_Ecto-sp8_S_contig10515.811.1|Name=mRNA_Ecto-sp8_S_contig10515.811.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=263bp MDLIESMDGATIRVDKDTKKGSVMDTIRLVLKCSSGTASTYLNGLFSTSLback to top mRNA from alignment at Ecto-sp8_S_contig10515:20..813- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10515.811.1 ID=mRNA_Ecto-sp8_S_contig10515.811.1|Name=mRNA_Ecto-sp8_S_contig10515.811.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=794bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10515:20..813- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10515:20..813- >mRNA_Ecto-sp8_S_contig10515.811.1 ID=mRNA_Ecto-sp8_S_contig10515.811.1|Name=mRNA_Ecto-sp8_S_contig10515.811.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10515:20..813- (Ectocarpus species8 EcLAC_412)back to top |