mRNA_Ecto-sp8_S_contig10513.809.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10513.809.1
Unique NamemRNA_Ecto-sp8_S_contig10513.809.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10513.809.1 vs. uniprot
Match: D7FW95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW95_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.290e-28
Identity = 115/122 (94.26%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:   10 CKVRRVDCRRGCGASVIARDLDSHEQDHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQEVCTQPCRWEGCGERLGPLVRRELHEQSLCPERPAECPHG 375
            CK RRVDCRRGCGASVIARDLDS      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQEVCTQPCRWEGCGERLGPLVRRELHEQSLCPERPAECPHG
Sbjct:  562 CKFRRVDCRRGCGASVIARDLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQEVCTQPCRWEGCGERLGPLVRRELHEQSLCPERPAECPHG 683
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BLAST of mRNA_Ecto-sp8_S_contig10513.809.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.380e-20
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:  250 EQEVCTQPCRWEGCGERLGPLVRRELHEQSLCPERPAECPHG 375
            EQEVCTQPCRWEGCGERLGPLVRRELHEQSLCPERPAECPHG
Sbjct:  507 EQEVCTQPCRWEGCGERLGPLVRRELHEQSLCPERPAECPHG 548
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BLAST of mRNA_Ecto-sp8_S_contig10513.809.1 vs. uniprot
Match: A0A7S1TZF4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZF4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.010e-10
Identity = 54/112 (48.21%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:  250 EQEVCTQPCRWEGCGERLGPLVRRELHEQSLCPERPAECPHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLPNN-EISEHVRAEGGTCPERFQRCRFDCLHRRILVR 582
            E+ VC Q C+W+GCG R+GP  RR +H++  CP R   CP G            XXXXXXXXXXXXXXXXXXX       ++  H  +E G C ER Q CRF+ L +RI  R
Sbjct:  260 EENVCVQVCKWDGCGVRVGPEDRRNIHQEIACPYRIVPCPLGCGIASLRAKDKEXXXXXXXXXXXXXXXXXXXXXXXXXXQVQAHCHSETGDCTERLQLCRFEFLGKRIRAR 371
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10513.809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FW95_ECTSI5.290e-2894.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2H6_9PHAE2.380e-20100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1TZF4_9STRA7.010e-1048.21Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10513contigEcto-sp8_S_contig10513:4184..6325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size798
Hectar predicted targeting categoryother localisation
Exons4
Cds size798
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143149.9582257-CDS-Ecto-sp8_S_contig10513:4183..43571681143149.9582257-CDS-Ecto-sp8_S_contig10513:4183..4357Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10513 4184..4357 +
1681143149.967353-CDS-Ecto-sp8_S_contig10513:4848..50601681143149.967353-CDS-Ecto-sp8_S_contig10513:4848..5060Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10513 4849..5060 +
1681143149.9825938-CDS-Ecto-sp8_S_contig10513:5539..57011681143149.9825938-CDS-Ecto-sp8_S_contig10513:5539..5701Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10513 5540..5701 +
1681143149.9938357-CDS-Ecto-sp8_S_contig10513:6075..63251681143149.9938357-CDS-Ecto-sp8_S_contig10513:6075..6325Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10513 6076..6325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10513.809.1prot_Ecto-sp8_S_contig10513.809.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10513 4184..6325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10513.809.1

>prot_Ecto-sp8_S_contig10513.809.1 ID=prot_Ecto-sp8_S_contig10513.809.1|Name=mRNA_Ecto-sp8_S_contig10513.809.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=266bp
MIRCKVRRVDCRRGCGASVIARDLDSHEQDHCRLSKHPCVFGCGEKITKA
KMDAHIKKDCRKRKVRCRLGCGSNVDAGELQHHEQEVCTQPCRWEGCGER
LGPLVRRELHEQSLCPERPAECPHGCGIRGLTAALKDTHALHHCQLRPVP
CPNGCGAVLPNNEISEHVRAEGGTCPERFQRCRFDCLHRRILVRETDDHT
GTTATAAAPPAKGDDRDRGDSNDDGKDGGTCDAATSEDEEKETEERDEKE
GGEPVELVPGMLKSYD
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mRNA from alignment at Ecto-sp8_S_contig10513:4184..6325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10513.809.1 ID=mRNA_Ecto-sp8_S_contig10513.809.1|Name=mRNA_Ecto-sp8_S_contig10513.809.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2142bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10513:4184..6325+ (Ectocarpus species8 EcLAC_412)
ATGATAAGGTGTAAGGTTCGTCGCGTCGACTGCCGACGCGGCTGCGGGGC
ATCCGTGATCGCGCGTGATCTGGACAGTCACGAGCAGGACCACTGCAGGC
TAAGCAAACACCCGTGCGTCTTCGGCTGCGGGGAGAAGATCACAAAAGCC
AAGATGGACGCTCACATCAAGAAGGTGACAGGGGAAAAGAAGGAACTATG
TGCCGCAAACATACGTTCTGGAGCGCGCATAAGTAAAATCATCATGCAAG
TTCTGCTATGTCCCTCGTTTAGCGCACTTTCTTTGTGCCTGGTCACGGCA
TAGGTTCTTGGTGGGCGATCTTGAGGGGCAAGAGCATAACGCGACACGAA
CACCAAGGGTGGAGCTCGCGTGCCTGTTACACCCTTGAAGGCGAACAAAC
GCAACGTTGGAAGGAGACCTGCATGAAGCTCCTCCCCAAAGCAAGAATCT
CAATACCACAAGGACCATCAACAAGTTCGGAAAAAAAAGCGCGATCTGGG
GTCCATCCACCCAGCATGCCTCCATTCACCCGTTGGGCCCGGTCAAAGGC
ACAACACAACCTGTTCCTACTTTCTTTAACGGCAACCAGTCAAACCTATA
TCTACATTTACATACCCGCCGTACCCGCTCCACCTCCACCCCTTGTCGCC
ATATTCCCTCAACAGGACTGCCGCAAGCGTAAGGTCCGCTGCAGACTGGG
GTGTGGCTCGAACGTTGACGCCGGGGAGCTGCAGCACCACGAGCAGGAGG
TTTGCACGCAGCCGTGCCGTTGGGAGGGGTGCGGGGAGCGGCTGGGGCCC
TTGGTGCGGCGGGAGTTGCACGAGCAATCGCTGTGCCCCGAGCGTCCCGC
GGAATGCCCCCACGGCTGCGGCATTAGGTATGCGCGTTCGTCCGTGCCGT
GCGCTGGTTCTTGTATTCACCCTCTCGTTAGCATCGAGGGCGCCTAACCG
ACTAAACAATGATGCCGTTCTCGGTAGGGGACATTTTATTGCGTGCAATA
TATGCGCGCGCGGGCATCGATCACACGTTTGTGAGCGTTTTCATCGGTTT
CATCGGGGTCCGTTAGTGACCGAAACAGCCCCCCAAGAAACACCTGGCGT
GTAGTAAACTTTAGGATACTCTACTTTCAGGGAATTCACAAGGACACAAT
CCGCGGTGATCATGGCATGATAAAGGTGAATGGTGACCCTATTGAGAACC
AACACGTCATTTTGGGTATGTATGCGATCTCGATGGCGTAATAGACACCA
AGACATGTAACAAATCACACCGAGTTACACACATCCCGTCGAGACTTGTC
TCCATTTCCGTCTGCTACGCTCCACCCTTTGGAACACCTCCACTGTTTCC
CGGCAGAGGGCTCACAGCGGCGCTAAAGGACACCCATGCCCTGCACCATT
GCCAGCTGAGACCCGTTCCGTGCCCCAACGGTTGCGGCGCCGTTCTCCCC
AACAATGAAATCTCTGAGCACGTCCGGGCAGAAGGGGGGACATGCCCGGA
ACGGTTTCAGCGGTGCAGGTGCTTCACCGGGGGTATGGGTTAGGGGGGAC
AGGGAGGGGGCGGAAAAGCGGGGCATGCTGAACGCTATGGGAGGACGGGG
TAGGACCATCAATGGTAACTGTCAAAGGTCGTGGGTTGTCACATTGCCAC
AACTGCACGGTACCCTGTGCCGCTTCACGGCAATGTCAATTCATTCATAA
TCTATCCCCCGGCCAACGTCTCCCTCTGTCTCGAACACCATAGGTTCCTT
TCGTAGCGCAATTTTTCGTGGCAGGCAAGAGTACGATAAAAGTATCTTAC
AAACAGTCTTTCTGTACGTTTTATCATGCCCAGGGGAAAAATGTATATGA
ATAAACTCGCGTATGTGTTTCCTCTGTGCTGTCTCGTCCAAGGTTTGATT
GTCTGCATCGAAGAATACTCGTACGGGAGACGGATGATCACACCGGAACA
ACAGCAACAGCAGCGGCACCGCCGGCAAAAGGCGATGATAGAGATAGGGG
CGATAGCAACGATGACGGCAAAGACGGCGGGACATGCGATGCAGCAACGT
CAGAGGATGAAGAAAAAGAGACGGAGGAGAGGGACGAAAAGGAGGGAGGA
GAACCGGTAGAGTTGGTTCCCGGGATGCTGAAATCGTACGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10513:4184..6325+

>mRNA_Ecto-sp8_S_contig10513.809.1 ID=mRNA_Ecto-sp8_S_contig10513.809.1|Name=mRNA_Ecto-sp8_S_contig10513.809.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10513:4184..6325+ (Ectocarpus species8 EcLAC_412)
ATGATAAGGTGTAAGGTTCGTCGCGTCGACTGCCGACGCGGCTGCGGGGC
ATCCGTGATCGCGCGTGATCTGGACAGTCACGAGCAGGACCACTGCAGGC
TAAGCAAACACCCGTGCGTCTTCGGCTGCGGGGAGAAGATCACAAAAGCC
AAGATGGACGCTCACATCAAGAAGGACTGCCGCAAGCGTAAGGTCCGCTG
CAGACTGGGGTGTGGCTCGAACGTTGACGCCGGGGAGCTGCAGCACCACG
AGCAGGAGGTTTGCACGCAGCCGTGCCGTTGGGAGGGGTGCGGGGAGCGG
CTGGGGCCCTTGGTGCGGCGGGAGTTGCACGAGCAATCGCTGTGCCCCGA
GCGTCCCGCGGAATGCCCCCACGGCTGCGGCATTAGAGGGCTCACAGCGG
CGCTAAAGGACACCCATGCCCTGCACCATTGCCAGCTGAGACCCGTTCCG
TGCCCCAACGGTTGCGGCGCCGTTCTCCCCAACAATGAAATCTCTGAGCA
CGTCCGGGCAGAAGGGGGGACATGCCCGGAACGGTTTCAGCGGTGCAGGT
TTGATTGTCTGCATCGAAGAATACTCGTACGGGAGACGGATGATCACACC
GGAACAACAGCAACAGCAGCGGCACCGCCGGCAAAAGGCGATGATAGAGA
TAGGGGCGATAGCAACGATGACGGCAAAGACGGCGGGACATGCGATGCAG
CAACGTCAGAGGATGAAGAAAAAGAGACGGAGGAGAGGGACGAAAAGGAG
GGAGGAGAACCGGTAGAGTTGGTTCCCGGGATGCTGAAATCGTACGAC
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