mRNA_Ecto-sp8_S_contig105121.806.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig105121.806.1
Unique NamemRNA_Ecto-sp8_S_contig105121.806.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A0U2V6F4_9MAXI (40S ribosomal protein S12 n=5 Tax=Calanoida TaxID=6833 RepID=A0A0U2V6F4_9MAXI)

HSP 1 Score: 251 bits (640), Expect = 6.410e-84
Identity = 124/140 (88.57%), Postives = 133/140 (95.00%), Query Frame = 1
Query:    1 MSDVEGD-VPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK 417
            MSDVEGD VPSAA   SGPMD+NTAIQEVLKQALIADGLARGLREA KALDKRQALLCIL+ENCDEPMYKKL+TALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSA V+R+WG+E+PAHDVLQEYLK+ +
Sbjct:    1 MSDVEGDDVPSAAAAPSGPMDMNTAIQEVLKQALIADGLARGLREAVKALDKRQALLCILSENCDEPMYKKLITALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSAAVIRNWGQETPAHDVLQEYLKSQR 140          
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A0U2T4K3_ACAPC (40S ribosomal protein S12 n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2T4K3_ACAPC)

HSP 1 Score: 238 bits (606), Expect = 9.470e-79
Identity = 115/139 (82.73%), Postives = 129/139 (92.81%), Query Frame = 1
Query:    1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK 417
            MSDVEGD  +A+  ASGPMDINTAIQEVLKQALIADG++RGLRE+AKALD+R+ALLC+L+ENCDEPMYKKLVTALCMEH IPLIKVDSNMKLGEWAGLCKID +GKARKVVKCS  VV +WGK++PAHDVLQEYLK+ K
Sbjct:    1 MSDVEGDDVAASAAASGPMDINTAIQEVLKQALIADGMSRGLRESAKALDQRKALLCVLSENCDEPMYKKLVTALCMEHNIPLIKVDSNMKLGEWAGLCKIDADGKARKVVKCSCAVVSNWGKDTPAHDVLQEYLKSQK 139          
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A0U2UNA1_ACAPC (40S ribosomal protein S12 n=2 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2UNA1_ACAPC)

HSP 1 Score: 238 bits (608), Expect = 2.120e-78
Identity = 116/139 (83.45%), Postives = 129/139 (92.81%), Query Frame = 1
Query:    1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK 417
            MSDVEGD  +A+  ASGPMDINTAIQEVLKQALIADGL+RGLRE+AKALD+R+ALLC+L+ENCDEPMYKKLVTALCMEH IPLIKVDSNMKLGEWAGLCKID +GKARKVVKCS  VV +WGK++PAHDVLQEYLK+ K
Sbjct:    1 MSDVEGDDVAASAAASGPMDINTAIQEVLKQALIADGLSRGLRESAKALDQRKALLCVLSENCDEPMYKKLVTALCMEHNIPLIKVDSNMKLGEWAGLCKIDADGKARKVVKCSCAVVSNWGKDTPAHDVLQEYLKSQK 139          
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A0U2TIB2_9MAXI (40S ribosomal protein S12 n=1 Tax=Centropages tenuiremis TaxID=544689 RepID=A0A0U2TIB2_9MAXI)

HSP 1 Score: 235 bits (599), Expect = 1.110e-77
Identity = 117/139 (84.17%), Postives = 124/139 (89.21%), Query Frame = 1
Query:    1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK 417
            MSDVEGD   AA  +SGPMDINTAI EVLKQALIADGLARGLREAAKALDKRQALLC+LA+NCDEPMYKKLVTALCMEH IPLIKVDSNMKLGEWAGLCK+D E KARKVVKCS  VV DWGKE+ AHD LQEYLK+ +
Sbjct:    1 MSDVEGDDVPAAATSSGPMDINTAIAEVLKQALIADGLARGLREAAKALDKRQALLCVLADNCDEPMYKKLVTALCMEHNIPLIKVDSNMKLGEWAGLCKLDNEDKARKVVKCSCAVVSDWGKETQAHDRLQEYLKSQR 139          
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A1S6GLF5_9MAXI (40S ribosomal protein S12 n=1 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A1S6GLF5_9MAXI)

HSP 1 Score: 229 bits (585), Expect = 1.510e-75
Identity = 111/137 (81.02%), Postives = 126/137 (91.97%), Query Frame = 1
Query:    1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKA 411
            MSDVEGD   +   A GPMDINTAIQEVL+QALIADGL+RGLRE+AKALDKRQALLCIL+ENC++  YKKL++ALC+EH IPLIKVDSNMKLGEWAGL KIDQEGKARKVVKCSACV++DWGKESPAHD+L+EYLK+
Sbjct:    1 MSDVEGDDVPSGLSAGGPMDINTAIQEVLRQALIADGLSRGLRESAKALDKRQALLCILSENCEDATYKKLISALCIEHAIPLIKVDSNMKLGEWAGLYKIDQEGKARKVVKCSACVIKDWGKESPAHDILREYLKS 137          
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A0U2T827_9MAXI (40S ribosomal protein S12 n=2 Tax=Calanoida TaxID=6833 RepID=A0A0U2T827_9MAXI)

HSP 1 Score: 223 bits (568), Expect = 6.710e-73
Identity = 115/143 (80.42%), Postives = 124/143 (86.71%), Query Frame = 1
Query:    1 MSDVEGD-VPS--AAPV-ASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK 417
            MSDVEGD VP+  AAP   S PMDIN AI  VLKQALIADGLARGLRE+AKALDKR+ALLC+LAENCDEPMYKKL+TALC EH IPLIKVDSNMKLGEWAGLCK+D EG ARKVVKCS  VVRDWG E+PAHD LQEYLK+ +
Sbjct:    1 MSDVEGDAVPAVAAAPAPVSRPMDINEAIMTVLKQALIADGLARGLRESAKALDKRRALLCVLAENCDEPMYKKLITALCQEHSIPLIKVDSNMKLGEWAGLCKLDGEGNARKVVKCSCAVVRDWGTETPAHDFLQEYLKSQR 143          
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A6M2DIB6_9NEOP (40S ribosomal protein S12 n=2 Tax=Pulicidae TaxID=7511 RepID=A0A6M2DIB6_9NEOP)

HSP 1 Score: 211 bits (537), Expect = 3.110e-68
Identity = 102/136 (75.00%), Postives = 118/136 (86.76%), Query Frame = 1
Query:    1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLK 408
            MSDVE DVPSAAPV  G MD+NTA+QEVLK ALI DGL  GL EA K+LDKRQA+LC+LAE+CDEPMYKKLV ALC EH IPL+KVDSN KLGEWAGLCKID++GKARK+V CS  V+RD+G+E+PA DVL++YLK
Sbjct:    1 MSDVEVDVPSAAPVVGGAMDVNTALQEVLKTALIHDGLVHGLHEATKSLDKRQAVLCVLAESCDEPMYKKLVQALCNEHQIPLVKVDSNKKLGEWAGLCKIDKDGKARKIVGCSCVVIRDFGEETPALDVLKDYLK 136          
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A7M5WSK6_9CNID (40S ribosomal protein S12 n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WSK6_9CNID)

HSP 1 Score: 207 bits (527), Expect = 1.110e-66
Identity = 102/137 (74.45%), Postives = 109/137 (79.56%), Query Frame = 1
Query:    1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKA 411
            MSD EGD    AP   GPMDINTA+QE+LK A++ DGLARGLREA KALDKR ALLCILA NCDE MY KL+ ALC EH I LIKVD N KLGEWAGLCKID+EG ARKVV CS  VV+DWGKES AHDVL EY KA
Sbjct:    1 MSDAEGDDVPTAPAPGGPMDINTALQEILKMAMVHDGLARGLREAVKALDKRTALLCILANNCDEQMYVKLIEALCAEHSINLIKVDDNKKLGEWAGLCKIDKEGNARKVVGCSCVVVKDWGKESQAHDVLMEYFKA 137          
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: UPI0005AD037B (40S ribosomal protein S12 n=1 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005AD037B)

HSP 1 Score: 204 bits (518), Expect = 2.610e-65
Identity = 100/138 (72.46%), Postives = 112/138 (81.16%), Query Frame = 1
Query:    1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKAN 414
            MSD E D    APV  GPMD+N A+QEVLK ALI DG+  GL EAAKALDKRQA+LCILA+NCDEPMYKKLVTALC EH IP IKVD+N KLGEWAGLCKID  GKARKVV CS  V++D+G+E+PA DVL EY+K N
Sbjct:    1 MSDTEADDIPPAPVVGGPMDVNQALQEVLKNALIHDGVVHGLHEAAKALDKRQAMLCILADNCDEPMYKKLVTALCNEHQIPFIKVDNNKKLGEWAGLCKIDNAGKARKVVGCSCVVIKDFGEETPAKDVLIEYIKQN 138          
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: UPI00083BFAD5 (40S ribosomal protein S12 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083BFAD5)

HSP 1 Score: 203 bits (517), Expect = 3.360e-65
Identity = 102/137 (74.45%), Postives = 113/137 (82.48%), Query Frame = 1
Query:    1 MSDVE-GDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLK 408
            MSDVE  D PSA P   GPMD+N A+Q+VLK ALI DG+  GL EAAK LDKRQA+LCILAENCDEPMYKKLV+ALC EH IPLIKVD+N KLGEWAGLCKID  GKARKVV CS  V+ D+G+ESPA DVL+EYLK
Sbjct:    1 MSDVEVDDAPSAPPAVGGPMDVNQALQDVLKTALIHDGVIHGLHEAAKTLDKRQAVLCILAENCDEPMYKKLVSALCSEHQIPLIKVDNNKKLGEWAGLCKIDNTGKARKVVGCSCVVITDYGEESPALDVLKEYLK 137          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2V6F4_9MAXI6.410e-8488.5740S ribosomal protein S12 n=5 Tax=Calanoida TaxID=... [more]
A0A0U2T4K3_ACAPC9.470e-7982.7340S ribosomal protein S12 n=1 Tax=Acartia pacifica... [more]
A0A0U2UNA1_ACAPC2.120e-7883.4540S ribosomal protein S12 n=2 Tax=Acartia pacifica... [more]
A0A0U2TIB2_9MAXI1.110e-7784.1740S ribosomal protein S12 n=1 Tax=Centropages tenu... [more]
A0A1S6GLF5_9MAXI1.510e-7581.0240S ribosomal protein S12 n=1 Tax=Pseudodiaptomus ... [more]
A0A0U2T827_9MAXI6.710e-7380.4240S ribosomal protein S12 n=2 Tax=Calanoida TaxID=... [more]
A0A6M2DIB6_9NEOP3.110e-6875.0040S ribosomal protein S12 n=2 Tax=Pulicidae TaxID=... [more]
A0A7M5WSK6_9CNID1.110e-6674.4540S ribosomal protein S12 n=1 Tax=Clytia hemisphae... [more]
UPI0005AD037B2.610e-6572.4640S ribosomal protein S12 n=1 Tax=Fopius arisanus ... [more]
UPI00083BFAD53.360e-6574.4540S ribosomal protein S12 n=1 Tax=Nicrophorus vesp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig105121contigEcto-sp8_S_contig105121:54..470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start1
Seed ortholog score207.6
Seed ortholog evalue3.7e-51
Seed eggNOG ortholog6669.EFX90257
Preferred nameRpS12
Model size417
KEGG koko:K02951
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Belongs to the eukaryotic ribosomal protein eS12 family
EggNOG OGs3A22P@33154,3BQNX@33208,3D7EY@33213,41ZC5@6656,COG1358@1,KOG3406@2759
Cds size417
COG Functional cat.J
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143149.8552895-CDS-Ecto-sp8_S_contig105121:53..4701681143149.8552895-CDS-Ecto-sp8_S_contig105121:53..470Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105121 54..470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig105121.806.1prot_Ecto-sp8_S_contig105121.806.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig105121 54..470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig105121.806.1

>prot_Ecto-sp8_S_contig105121.806.1 ID=prot_Ecto-sp8_S_contig105121.806.1|Name=mRNA_Ecto-sp8_S_contig105121.806.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=139bp
MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALD
KRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCK
IDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK
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mRNA from alignment at Ecto-sp8_S_contig105121:54..470-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig105121.806.1 ID=mRNA_Ecto-sp8_S_contig105121.806.1|Name=mRNA_Ecto-sp8_S_contig105121.806.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105121:54..470- (Ectocarpus species8 EcLAC_412)
ATGAGTGATGTTGAAGGAGATGTCCCTTCCGCTGCCCCAGTGGCCAGCGG ACCCATGGACATTAACACTGCCATCCAAGAAGTCCTGAAGCAGGCACTCA TTGCCGATGGACTTGCTCGCGGTCTCCGCGAAGCAGCCAAGGCTCTGGAC AAACGCCAGGCCCTCCTCTGCATCCTTGCAGAAAACTGTGATGAGCCCAT GTACAAGAAACTCGTGACTGCTCTCTGCATGGAGCACGGAATCCCTCTTA TCAAGGTTGACTCCAACATGAAGCTTGGTGAATGGGCTGGTCTTTGCAAG ATCGACCAAGAAGGCAAAGCCAGAAAGGTCGTCAAATGCTCTGCATGCGT TGTGAGGGACTGGGGCAAGGAGAGCCCAGCTCATGACGTTCTCCAGGAGT ACCTGAAGGCCAACAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105121:54..470-

>mRNA_Ecto-sp8_S_contig105121.806.1 ID=mRNA_Ecto-sp8_S_contig105121.806.1|Name=mRNA_Ecto-sp8_S_contig105121.806.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105121:54..470- (Ectocarpus species8 EcLAC_412)
ATGAGTGATGTTGAAGGAGATGTCCCTTCCGCTGCCCCAGTGGCCAGCGG
ACCCATGGACATTAACACTGCCATCCAAGAAGTCCTGAAGCAGGCACTCA
TTGCCGATGGACTTGCTCGCGGTCTCCGCGAAGCAGCCAAGGCTCTGGAC
AAACGCCAGGCCCTCCTCTGCATCCTTGCAGAAAACTGTGATGAGCCCAT
GTACAAGAAACTCGTGACTGCTCTCTGCATGGAGCACGGAATCCCTCTTA
TCAAGGTTGACTCCAACATGAAGCTTGGTGAATGGGCTGGTCTTTGCAAG
ATCGACCAAGAAGGCAAAGCCAGAAAGGTCGTCAAATGCTCTGCATGCGT
TGTGAGGGACTGGGGCAAGGAGAGCCCAGCTCATGACGTTCTCCAGGAGT
ACCTGAAGGCCAACAAG
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