mRNA_Ecto-sp8_S_contig105076.798.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig105076.798.1
Unique NamemRNA_Ecto-sp8_S_contig105076.798.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Match: A0A1W6K7Z1_9GAMM (Flagellin n=15 Tax=Marinobacter TaxID=2742 RepID=A0A1W6K7Z1_9GAMM)

HSP 1 Score: 291 bits (744), Expect = 3.600e-94
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1
Query:    1 QTVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDFTAAGSQQLAVQGSGDPSAIELTSGGANATRVAGELTLDSSVSFAATSDATLAAGSVLNSAQNTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 513
            QTVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDFTAAGSQQLAVQGSGDPSAIELTSGGANATRVAGELTLDSSVSFAATSDATLAAGSVLNSAQNTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL
Sbjct:  263 QTVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDFTAAGSQQLAVQGSGDPSAIELTSGGANATRVAGELTLDSSVSFAATSDATLAAGSVLNSAQNTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 433          
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Match: A0A2A5LZ39_9GAMM (Flagellin n=2 Tax=unclassified Marinobacter TaxID=83889 RepID=A0A2A5LZ39_9GAMM)

HSP 1 Score: 236 bits (603), Expect = 5.280e-73
Identity = 135/172 (78.49%), Postives = 160/172 (93.02%), Query Frame = 1
Query:    1 QTVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDFTAAGSQQLAVQGSGDPSAIELTSGGANATRVAGELTLDSSVSFAATSDATLAAGSVLNSAQ-NTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 513
            QT+SLT+SNGSSSAT+SAQITDA+DLSA+ARE+N+A+GKTGITAEV +DGSITL+Q QGKDI + DFTA+GS+QLAVQGSGDPSAIELT+G AN+TRV GE+TLDS+VSFAA+SDAT AAGS+LN+A  NTA+GST E VA +DISTV+GAT+ALAV+DAALETISGIRADL
Sbjct:  263 QTISLTVSNGSSSATVSAQITDASDLSALAREINSATGKTGITAEVESDGSITLVQPQGKDIALSDFTASGSEQLAVQGSGDPSAIELTNGAANSTRVGGEITLDSAVSFAASSDATAAAGSMLNNAAANTASGSTTEAVADVDISTVEGATNALAVIDAALETISGIRADL 434          
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Match: A0A2S5ZFQ9_9GAMM (Flagellin n=1 Tax=Marinobacter maroccanus TaxID=2055143 RepID=A0A2S5ZFQ9_9GAMM)

HSP 1 Score: 195 bits (495), Expect = 7.110e-57
Identity = 120/180 (66.67%), Postives = 141/180 (78.33%), Query Frame = 1
Query:    1 QTVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDFTAAGSQQLAVQGSGDPSAIELTSGGANAT---RVAGELTLDSSVSFAATSDATLAA------GSVLNSAQNTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 513
            QT++LT+SNG SSATISAQI+DANDLS +A+E+N+ASG+TGITAEV +DGSITL+   GKD+ IE+FTAA   QLAVQGS DPSA ELTSG    T   RVAGE+T DS+VSFA  S A   A      GS+L  A NT+ GS PE+VA IDIS+V+GAT ALA+VDAALETISGIRADL
Sbjct:  263 QTITLTVSNGESSATISAQISDANDLSPLAKEINSASGRTGITAEVEDDGSITLVHPTGKDVLIENFTAADGDQLAVQGSADPSATELTSGPTAPTDSVRVAGEITFDSAVSFAVQSSAAPTAPGGADTGSILGVAANTSVGSNPEDVASIDISSVEGATDALAIVDAALETISGIRADL 442          
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Match: UPI001C970472 (flagellin n=1 Tax=Marinobacter nauticus TaxID=2743 RepID=UPI001C970472)

HSP 1 Score: 171 bits (434), Expect = 5.340e-48
Identity = 105/173 (60.69%), Postives = 135/173 (78.03%), Query Frame = 1
Query:    4 TVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDFT--AAGSQQLAVQGSGDPSAIELTSGGANATRVAGELTLDSSVSFAATSDATLAAGSVLNSAQ-NTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 513
            TVS+T+ +GS S+TISAQI+D NDLS +ARE+NAASGKTG+TAEV  DG++TLIQE G+DI +E+FT  A  +  +  QGS D +   LTSGG ++ R +GELT DS+VSFA +S     AGSV N+A  NTA GSTPE VA +DIS+ +GAT+AL+++DAALET+SGIRADL
Sbjct:  259 TVSMTIGSGSQSSTISAQISDVNDLSPLAREINAASGKTGVTAEV-KDGTLTLIQENGRDIVLENFTTNATPANTVNFQGSADAAPTALTSGGNDSIRASGELTFDSAVSFAVSSSVGAGAGSVFNNAAGNTAIGSTPETVASVDISSFEGATNALSILDAALETVSGIRADL 430          
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Match: UPI001C56EC58 (flagellin n=1 Tax=Marinobacter adhaerens TaxID=1033846 RepID=UPI001C56EC58)

HSP 1 Score: 166 bits (419), Expect = 1.040e-45
Identity = 109/184 (59.24%), Postives = 126/184 (68.48%), Query Frame = 1
Query:    1 QTVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDFTAAGSQQLAVQGSGDPSAIELTSGGANA-----TRVAGELTLDSSVSFAATSDATLAA--------GSVLNSAQNTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 513
            QTV++T+SNG +SAT+       +DLS +A E+N ASG+TGI AEV NDGSI L+   GKDI IEDFTA  ++ + VQGS DP+   LTSG   A      RV+GELT DSSVSFA  S A            GSVLN A +TA GSTPE VAGIDISTVDGAT +LAVVDAALE IS IRADL
Sbjct:  260 QTVTMTISNGETSATVXXXXXXXSDLSPLANEINRASGRTGINAEVNNDGSIKLVHPSGKDIVIEDFTAGDTETIEVQGSSDPNPETLTSGPTGAPTDDSVRVSGELTFDSSVSFALQSTAAQTVSDPIVANEGSVLNVAADTADGSTPENVAGIDISTVDGATDSLAVVDAALERISSIRADL 443          
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Match: A0A1H3DED0_9GAMM (Flagellin n=2 Tax=Marinobacter TaxID=2742 RepID=A0A1H3DED0_9GAMM)

HSP 1 Score: 163 bits (413), Expect = 6.590e-45
Identity = 102/176 (57.95%), Postives = 133/176 (75.57%), Query Frame = 1
Query:    4 TVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDFTAAGSQQ-LAVQGSGDPSAIELTSGGA-----NATRVAGELTLDSSVSFAATSDATLAAGSVLNSAQNTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 513
            TV++TLS+G   ATISAQI+D +DL  +A+E+NAASGKTGITAEV  DG +TL+QEQGKDI +EDF+  G+   ++ +G  +  A  +T  GA     +++R  GE+T DS+VSFA +S    AAGS+LN A +TA GS PE+V+GIDIS+ +GAT ALA+VDAALETISGIRADL
Sbjct:  259 TVAITLSSGGEKATISAQISDVDDLRPLAKEINAASGKTGITAEVV-DGRLTLVQEQGKDILLEDFSTNGAATTVSFRGGAELDAAAITLDGAPGSVTDSSRATGEITFDSAVSFAVSSSVADAAGSILNVAADTAVGSVPEDVSGIDISSFEGATDALAIVDAALETISGIRADL 433          
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Match: A0A2E5MME1_9ALTE (Flagellin n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2E5MME1_9ALTE)

HSP 1 Score: 156 bits (394), Expect = 3.890e-42
Identity = 102/177 (57.63%), Postives = 129/177 (72.88%), Query Frame = 1
Query:    4 TVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDF-TAAGSQQLAVQGSGDPSAIELTSGGANA-----TRVAGELTLDSSVSFAATSDATLAAGSVLNSAQ-NTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 513
            TVS+T+S+G   AT+SAQI D  DLS +ARE+N+A+GKTGITAEV  DG +   QE+GKDI +EDF T AG+   + +G  +     +T  GA A     TRV+G++T DSS SFA +S  T AAGS+L++A  NTA GST E+V+GIDIST  GAT ALA+VDAALE+ISGIRADL
Sbjct:  259 TVSMTISSGGEKATVSAQIDDVTDLSPLAREINSAAGKTGITAEV-QDGRLIFTQEEGKDILVEDFSTNAGTATASFKGEAEADGDAITLSGAPASTTDSTRVSGQITFDSSSSFAVSSSITAAAGSILDTATANTAIGSTTEDVSGIDISTFQGATDALAIVDAALESISGIRADL 434          
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Match: UPI0014082506 (flagellin n=1 Tax=Marinobacter caseinilyticus TaxID=2692195 RepID=UPI0014082506)

HSP 1 Score: 155 bits (391), Expect = 1.040e-41
Identity = 105/176 (59.66%), Postives = 124/176 (70.45%), Query Frame = 1
Query:    4 TVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDF-TAAGSQQLAVQGSG--DPSAIELTSGGANAT---RVAGELTLDSSVSFAATSDATLAAGSVLNSAQNTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 513
            T SLT+S+G   ATISAQI D  DL  +ARE+NAASGKTGITAEV  DG + L+QE+GKDI +EDF T A +   + +G    D SAI L    A+ T   R +GE+T DSSVSFA  SD   AAGSVLN   +TA GST E+++ IDIST  GAT +LAVVDAALE ISGIRADL
Sbjct:  259 TFSLTVSSGGEKATISAQIDDVADLRPLAREINAASGKTGITAEV-EDGRLILVQEEGKDILVEDFSTNAATTTASFRGGAELDASAITLDGAAASVTDSSRASGEITFDSSVSFAIRSDVAAAAGSVLNVVADTAVGSTKEDISSIDISTFQGATDSLAVVDAALEIISGIRADL 433          
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Match: UPI000F8555B3 (flagellin n=1 Tax=Marinobacter salarius TaxID=1420917 RepID=UPI000F8555B3)

HSP 1 Score: 155 bits (391), Expect = 1.230e-41
Identity = 104/176 (59.09%), Postives = 128/176 (72.73%), Query Frame = 1
Query:    4 TVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDF-TAAGSQQLAVQGSG--DPSAIELTSGGANAT---RVAGELTLDSSVSFAATSDATLAAGSVLNSAQNTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 513
            T ++TLS+G   AT+SAQI D +DLS +ARE+NAASG TGITAE+  DG + LIQEQGKDI +EDF T A +  ++ +GS   D  AI L+   A+ T   R +GE+T DSSVSFA +S     AGS+L+ A +TA GST E+V+ IDI TV GAT ALAVVDAALETISGIRADL
Sbjct:  270 TYTMTLSSGGEKATVSAQIQDVSDLSPLAREINAASGSTGITAEI-EDGRLVLIQEQGKDILLEDFSTNAETTDVSFRGSSEVDGDAITLSGAAASTTDSARASGEITFDSSVSFAVSSGEDDTAGSILDVAGSTAVGSTKEDVSSIDIGTVQGATDALAVVDAALETISGIRADL 444          
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Match: UPI000DAE9DA2 (flagellin n=2 Tax=Marinobacter TaxID=2742 RepID=UPI000DAE9DA2)

HSP 1 Score: 148 bits (373), Expect = 4.210e-39
Identity = 94/175 (53.71%), Postives = 124/175 (70.86%), Query Frame = 1
Query:    4 TVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDGSITLIQEQGKDITIEDFTAAGSQQLA-----VQGSGDPSAIELTSGGANATRVAGELTLDSSVSFAATSDATLAAGSVLNSAQNTAAGSTPEEVAGIDISTVDGATSALAVVDAALETISGIRADL 513
            TVS+T+S+G   +TISAQI D +DL  +ARE+N+ASG TGITAEV  DG +TL+Q +GKDI +EDFT+  +   A      +  GD   ++ +   A++ R +GE+T DSS SFA +S     AGS+L+ A  TA GST E+V+ IDISTV+GA SA+AV+DAALE ISGIRADL
Sbjct:  260 TVSMTISSGGEKSTISAQIDDVDDLRPLAREINSASGTTGITAEV-EDGRLTLVQAEGKDILVEDFTSNATTPTASFRGGAEVDGDAITLDGSDDTADSARASGEITFDSSSSFAVSSSIDDTAGSILDEAGGTAVGSTTEDVSSIDISTVEGANSAIAVIDAALEKISGIRADL 433          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105076.798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W6K7Z1_9GAMM3.600e-94100.00Flagellin n=15 Tax=Marinobacter TaxID=2742 RepID=A... [more]
A0A2A5LZ39_9GAMM5.280e-7378.49Flagellin n=2 Tax=unclassified Marinobacter TaxID=... [more]
A0A2S5ZFQ9_9GAMM7.110e-5766.67Flagellin n=1 Tax=Marinobacter maroccanus TaxID=20... [more]
UPI001C9704725.340e-4860.69flagellin n=1 Tax=Marinobacter nauticus TaxID=2743... [more]
UPI001C56EC581.040e-4559.24flagellin n=1 Tax=Marinobacter adhaerens TaxID=103... [more]
A0A1H3DED0_9GAMM6.590e-4557.95Flagellin n=2 Tax=Marinobacter TaxID=2742 RepID=A0... [more]
A0A2E5MME1_9ALTE3.890e-4257.63Flagellin n=1 Tax=Alteromonadaceae bacterium TaxID... [more]
UPI00140825061.040e-4159.66flagellin n=1 Tax=Marinobacter caseinilyticus TaxI... [more]
UPI000F8555B31.230e-4159.09flagellin n=1 Tax=Marinobacter salarius TaxID=1420... [more]
UPI000DAE9DA24.210e-3953.71flagellin n=2 Tax=Marinobacter TaxID=2742 RepID=UP... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig105076contigEcto-sp8_S_contig105076:3..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score290.4
Seed ortholog evalue5.4e-76
Seed eggNOG ortholog443152.MDG893_01100
Preferred namefliC
Model size513
KEGG koko:K02406
KEGG Pathwayko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
EggNOG OGs1MV1N@1224,1RN0Y@1236,464FC@72275,COG1344@1,COG1344@2
Cds size513
COG Functional cat.N
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143149.3061025-CDS-Ecto-sp8_S_contig105076:2..5151681143149.3061025-CDS-Ecto-sp8_S_contig105076:2..515Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105076 3..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig105076.798.1prot_Ecto-sp8_S_contig105076.798.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig105076 3..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig105076.798.1

>prot_Ecto-sp8_S_contig105076.798.1 ID=prot_Ecto-sp8_S_contig105076.798.1|Name=mRNA_Ecto-sp8_S_contig105076.798.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=171bp
QTVSLTLSNGSSSATISAQITDANDLSAIAREVNAASGKTGITAEVANDG
SITLIQEQGKDITIEDFTAAGSQQLAVQGSGDPSAIELTSGGANATRVAG
ELTLDSSVSFAATSDATLAAGSVLNSAQNTAAGSTPEEVAGIDISTVDGA
TSALAVVDAALETISGIRADL
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mRNA from alignment at Ecto-sp8_S_contig105076:3..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig105076.798.1 ID=mRNA_Ecto-sp8_S_contig105076.798.1|Name=mRNA_Ecto-sp8_S_contig105076.798.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=513bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105076:3..515+ (Ectocarpus species8 EcLAC_412)
CAAACCGTGTCGCTCACCCTTTCCAATGGGAGCAGCTCAGCGACCATTTC CGCGCAGATCACCGATGCAAACGACCTCTCAGCGATTGCACGTGAGGTGA ACGCCGCGTCTGGCAAGACCGGCATTACCGCGGAAGTTGCTAACGACGGC AGTATCACGCTGATTCAGGAACAGGGTAAAGACATCACTATCGAAGACTT TACCGCTGCCGGCTCTCAACAGTTGGCGGTACAGGGTAGCGGCGACCCGA GCGCCATCGAACTGACAAGTGGTGGAGCTAATGCCACACGGGTTGCCGGC GAATTGACGCTGGACTCGTCCGTTAGCTTCGCGGCGACGTCTGACGCCAC CCTGGCCGCAGGCAGCGTCCTGAACAGTGCACAGAATACCGCCGCCGGCT CTACGCCTGAAGAAGTGGCAGGTATCGATATAAGCACCGTTGACGGCGCC ACCAGCGCACTCGCAGTTGTGGACGCGGCATTGGAAACCATCAGTGGCAT TCGTGCCGACCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105076:3..515+

>mRNA_Ecto-sp8_S_contig105076.798.1 ID=mRNA_Ecto-sp8_S_contig105076.798.1|Name=mRNA_Ecto-sp8_S_contig105076.798.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105076:3..515+ (Ectocarpus species8 EcLAC_412)
CAAACCGTGTCGCTCACCCTTTCCAATGGGAGCAGCTCAGCGACCATTTC
CGCGCAGATCACCGATGCAAACGACCTCTCAGCGATTGCACGTGAGGTGA
ACGCCGCGTCTGGCAAGACCGGCATTACCGCGGAAGTTGCTAACGACGGC
AGTATCACGCTGATTCAGGAACAGGGTAAAGACATCACTATCGAAGACTT
TACCGCTGCCGGCTCTCAACAGTTGGCGGTACAGGGTAGCGGCGACCCGA
GCGCCATCGAACTGACAAGTGGTGGAGCTAATGCCACACGGGTTGCCGGC
GAATTGACGCTGGACTCGTCCGTTAGCTTCGCGGCGACGTCTGACGCCAC
CCTGGCCGCAGGCAGCGTCCTGAACAGTGCACAGAATACCGCCGCCGGCT
CTACGCCTGAAGAAGTGGCAGGTATCGATATAAGCACCGTTGACGGCGCC
ACCAGCGCACTCGCAGTTGTGGACGCGGCATTGGAAACCATCAGTGGCAT
TCGTGCCGACCTG
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