mRNA_Ecto-sp8_S_contig10504.793.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10504.793.1
Unique NamemRNA_Ecto-sp8_S_contig10504.793.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10504.793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10504contigEcto-sp8_S_contig10504:4854..5295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size329
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143148.9756856-CDS-Ecto-sp8_S_contig10504:4853..50451681143148.9756856-CDS-Ecto-sp8_S_contig10504:4853..5045Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10504 4854..5045 +
1681143148.9867713-CDS-Ecto-sp8_S_contig10504:5160..52951681143148.9867713-CDS-Ecto-sp8_S_contig10504:5160..5295Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10504 5161..5295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10504.793.1prot_Ecto-sp8_S_contig10504.793.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10504 4854..5295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10504.793.1

>prot_Ecto-sp8_S_contig10504.793.1 ID=prot_Ecto-sp8_S_contig10504.793.1|Name=mRNA_Ecto-sp8_S_contig10504.793.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=109bp
ILGCSCSCRRRTSPSARRTSNKRRQRGPPYRCSRRKISGGRPCYSVRRPF
LTGGSFPRAPHLRDEDYLRLLLTPPYFRGNPCIMPHEDAPHHGQAARQQR
LGRPIHQV*
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mRNA from alignment at Ecto-sp8_S_contig10504:4854..5295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10504.793.1 ID=mRNA_Ecto-sp8_S_contig10504.793.1|Name=mRNA_Ecto-sp8_S_contig10504.793.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=442bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10504:4854..5295+ (Ectocarpus species8 EcLAC_412)
ATCCTTGGGTGCAGCTGCTCATGTCGCAGAAGGACCAGTCCGTCGGCCAG
ACGTACATCGAACAAGCGCCGGCAGCGAGGCCCACCCTACCGCTGCAGCC
GCCGAAAAATTAGCGGCGGCCGCCCTTGTTACTCAGTTCGACGTCCCTTC
CTCACGGGCGGGAGTTTTCCGCGGGCCCCCCATCTTCGCGACGTAAGCAT
TACGAGGAATCCTTGTGCGTTCGTTCCTACTCCACCCCGCCCACCCCTCC
ATTCCCCATGCACAAACTCAACAATTGTGTCCACGCCCTCACTCATGGAC
CTTTCAGGAGGACTATTTACGGCTGTTACTGACGCCCCCATACTTCCGAG
GAAACCCGTGCATCATGCCGCATGAGGACGCGCCCCACCACGGGCAGGCT
GCACGACAACAACGACTAGGGCGACCCATTCATCAGGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10504:4854..5295+

>mRNA_Ecto-sp8_S_contig10504.793.1 ID=mRNA_Ecto-sp8_S_contig10504.793.1|Name=mRNA_Ecto-sp8_S_contig10504.793.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10504:4854..5295+ (Ectocarpus species8 EcLAC_412)
ATCCTTGGGTGCAGCTGCTCATGTCGCAGAAGGACCAGTCCGTCGGCCAG
ACGTACATCGAACAAGCGCCGGCAGCGAGGCCCACCCTACCGCTGCAGCC
GCCGAAAAATTAGCGGCGGCCGCCCTTGTTACTCAGTTCGACGTCCCTTC
CTCACGGGCGGGAGTTTTCCGCGGGCCCCCCATCTTCGCGACGAGGACTA
TTTACGGCTGTTACTGACGCCCCCATACTTCCGAGGAAACCCGTGCATCA
TGCCGCATGAGGACGCGCCCCACCACGGGCAGGCTGCACGACAACAACGA
CTAGGGCGACCCATTCATCAGGTGTAG
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