mRNA_Ecto-sp8_S_contig105015.790.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: D7G7I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I2_ECTSI) HSP 1 Score: 208 bits (530), Expect = 2.530e-60 Identity = 104/133 (78.20%), Postives = 105/133 (78.95%), Query Frame = 1
Query: 1 SCMRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGISR--------------------------EFSADTGSEPSPSYRLKQGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
SCMRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRG SR EFSADTGSEPSPSYR K+GRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI
Sbjct: 1385 SCMRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGTSRGISLGRGVEQPPGVPAGMGMRDPAYEEFSADTGSEPSPSYRPKRGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 1517
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A6H5JER7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER7_9PHAE) HSP 1 Score: 196 bits (498), Expect = 1.230e-56 Identity = 100/133 (75.19%), Postives = 101/133 (75.94%), Query Frame = 1
Query: 1 SCMRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGISR--------------------------EFSADTGSEPSPSYRLKQGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
SCMRYSPSGSHLAIGCKNGSLVIMAVE DDGRYDDAGEQRG SR EFSADTGSE SPSYR K+ RR VYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI
Sbjct: 521 SCMRYSPSGSHLAIGCKNGSLVIMAVERDDGRYDDAGEQRGRSRGISLGRGVEQPPGVPEGMGMRDPAYEEFSADTGSESSPSYRPKRERRKVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 653
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A183A573_9TREM (HELP domain-containing protein n=2 Tax=Echinostomatoidea TaxID=404429 RepID=A0A183A573_9TREM) HSP 1 Score: 53.5 bits (127), Expect = 5.640e-6 Identity = 44/116 (37.93%), Postives = 59/116 (50.86%), Query Frame = 1
Query: 16 SPSGSH-----LAIGCKNGS-LVIMAVEHD--DGRYDDAGEQRGISREFSAD-----TGSEPSPSYR---LKQGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHW 315
SPSG +A+G +G LVI A+ H+ D GEQ +S D GS + Y L+QGR+ Y R+ GHSS VLH+DW+ DGR++ + DY LL W
Sbjct: 469 SPSGLGSGEPVIALGTTSGRWLVIDALRHEIIAAHSDGIGEQIECIA-YSPDGYYLALGSRDNGIYVYHVLEQGRK--YNRVGRCSGHSSFVLHIDWSTDGRYLRSVSGDYELLFW 581
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A0R3X3E0_HYDTA (Uncharacterized protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3X3E0_HYDTA) HSP 1 Score: 52.4 bits (124), Expect = 1.380e-5 Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1
Query: 190 RRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
R T Y R+ GHSS VLHLDW+ED +++ + DY LL+W +
Sbjct: 327 RGTKYSRLGKCSGHSSFVLHLDWSEDSQYIRSVSGDYELLYWSV 370
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A0X3NU21_SCHSO (Uncharacterized protein n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3NU21_SCHSO) HSP 1 Score: 50.8 bits (120), Expect = 4.830e-5 Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1
Query: 202 YRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
Y R+ GHSS VLHLDW+ED +++ T DY LL+W +
Sbjct: 352 YTRLGKCSGHSSFVLHLDWSEDSQYLRTTSGDYELLYWTV 391
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A0R3W9K2_TAEAS (HELP domain-containing protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3W9K2_TAEAS) HSP 1 Score: 50.8 bits (120), Expect = 4.960e-5 Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1
Query: 190 RRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHW 315
R T Y R+ GHSS VLHLDW+ED +++ + DY LL+W
Sbjct: 497 RGTKYSRLGKCSGHSSFVLHLDWSEDNQYIRSVSGDYELLYW 538
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A183SD58_SCHSO (HELP domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SD58_SCHSO) HSP 1 Score: 50.8 bits (120), Expect = 5.090e-5 Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1
Query: 202 YRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
Y R+ GHSS VLHLDW+ED +++ T DY LL+W +
Sbjct: 790 YTRLGKCSGHSSFVLHLDWSEDSQYLRTTSGDYELLYWTV 829
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A654H070_9CEST (HELP domain-containing protein n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A654H070_9CEST) HSP 1 Score: 50.8 bits (120), Expect = 5.100e-5 Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1
Query: 202 YRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
Y R+ GHSS VLHLDW+ED +++ T DY LL+W +
Sbjct: 819 YTRLGKCSGHSSFVLHLDWSEDSQYLRTTSGDYELLYWTV 858
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A1R2BP96_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BP96_9CILI) HSP 1 Score: 50.4 bits (119), Expect = 7.180e-5 Identity = 33/111 (29.73%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 13 YSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGISR-EFSAD-----TGSEPSP--SYRLKQGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
YSPSG +A+G +NG ++I+ E + + +GIS+ ++S D G S +Y + + + Y+ +KGHSS + HLD++E G + + Y LL+ ++
Sbjct: 640 YSPSGDSIAVGLQNGKILILNAETLEVKAGKHDRIKGISQIKYSPDGSILAAGGHDSIIITYLVNENYKLQYK----MKGHSSAITHLDFSESGGTIQSTSLSYELLYHNL 746
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A1X2IMR4_9FUNG (Protein HIR n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IMR4_9FUNG) HSP 1 Score: 50.1 bits (118), Expect = 9.500e-5 Identity = 30/107 (28.04%), Postives = 50/107 (46.73%), Query Frame = 1
Query: 4 CMRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGISREFSADTGSEPSPSYRLKQG--RRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWD 318
C+R+S +G +LA N ++VI+ + SEPS + G ++ +R + HL+GH S V L W+ D R++ +CG D + + WD
Sbjct: 88 CVRWSKNGRYLASSSDNDNVVIIW-----------------------ELDSEPSSASDFGDGEAKQETWRPVKHLRGHDSDVQDLAWSNDNRYLASCGIDGYAIIWD 171 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig105015.790.1 >prot_Ecto-sp8_S_contig105015.790.1 ID=prot_Ecto-sp8_S_contig105015.790.1|Name=mRNA_Ecto-sp8_S_contig105015.790.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp MRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGISREFSADTGSback to top mRNA from alignment at Ecto-sp8_S_contig105015:38..436- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig105015.790.1 ID=mRNA_Ecto-sp8_S_contig105015.790.1|Name=mRNA_Ecto-sp8_S_contig105015.790.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=399bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105015:38..436- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105015:38..436- >mRNA_Ecto-sp8_S_contig105015.790.1 ID=mRNA_Ecto-sp8_S_contig105015.790.1|Name=mRNA_Ecto-sp8_S_contig105015.790.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105015:38..436- (Ectocarpus species8 EcLAC_412)back to top |