mRNA_Ecto-sp8_S_contig105.784.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 309 bits (792), Expect = 8.280e-102 Identity = 155/264 (58.71%), Postives = 200/264 (75.76%), Query Frame = 3
Query: 3 PRSDPAVVMQVVSKDYIKLQRNFIRLMEKNSDFTRENLYLMCLDDESYRAIHGGMGIRCVPLTSLLRNNNRKQIFTLRVQVVSCLVKAGHDVILSDADALWLADPMKDFSLPTIRESSIVAARGGFPHDLAHQWGSTMCMGFIFFRAEGKRI-GEYVAVMNELVLKNANDQVSVNKAAKSLGIVWDKGGSDMRYEKSVTFGGGTIDSLVDDESRPFRVTLLPHSTYPRICEETPISENTRVAHCLWVGKGEVMST-WMKHANLW 788
PRSDPA+VMQVVS+ Y++L+RNFIRLME NS TR++LYLMC+D+ S M IRC+PLT+ + +I+ LR +VVSCLV+AG DVI+SDADALWL DP KDF+LP + +SS+VA+RG FP L +WG+TMCMGF+ FRA G+R+ GE++ VM+ LV KN +DQ+SVN AA++LGIVWD+ SDMRY +S +FG GTID+LVD+ ++PF VTLLPH+ Y R+C+ETPIS T VAHC W K T WM + LW
Sbjct: 53 PRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAF-DFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQE-SDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHC-WAPKTADSKTGWMVQSKLW 313
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 259 bits (661), Expect = 1.120e-81 Identity = 151/296 (51.01%), Postives = 187/296 (63.18%), Query Frame = 3
Query: 3 PRSDPAVVMQVVSKDYIKLQRNFIRLMEKNSDFTRENLYLMCLDDESYRAIHGGMGIRCVPLTSLLRNNNRKQIFTLRVQVVSCLVKAGH-DVILSDADALWLADPMKD-FSLPTIRESSIVAARGGFPHDLAHQWGSTMCMGFIFFRAEGKR-IGEYVAVMNELVLKNANDQVSVNKAAKSLGIVWDKGGSDMRYEKSVTFGGGTIDSL----------------------------VDDESRPFRVTLLPHSTYPRICEETPISENTRV-AHCLWVGK-GEVMSTWMKHANLWS 791
PRS PAVVMQVVS+ YI ++RNFIRLME+NS FTR N+YLMC+DD S MGIRCVP+ S L + I+ LRV+VVSCL++ G+ DVI+SDADALWLADP KD FS IVA+RG +P+D +WGST+CMGFI FRA + ++ VM +LV++N +DQ+SVN+AAK LGIVWDK SDMRYE+S +G G I L + PFRVTLLPHS Y R+C +S T V AHC + K V ++WMK ANLWS
Sbjct: 45 PRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPM-SALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKN-SDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWS 338
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE) HSP 1 Score: 252 bits (644), Expect = 4.760e-79 Identity = 130/263 (49.43%), Postives = 175/263 (66.54%), Query Frame = 3
Query: 3 PRSDPAVVMQVVSKDYIKLQRNFIRLMEKNSDFTRENLYLMCLDDESYRAIHGGMGIRCVPLTSLLRNNNRKQIFTLRVQVVSCLVKAGHDVILSDADALWLADPMKDFSLPTIRESSIVAARGGFPHDLAHQWGSTMCMGFIFFRAEGKRIGEYVAVMNELVLKNANDQVSVNKAAKSLGIVWDKGGSDMRYEKSVTFGGGTIDSLVDDESRPFRVTLLPHSTYPRICEETPISENTRVAHCLWVGKGEVMSTWMKHANLWS 791
PRS PAVV QVVS+ Y L+ NFI ME +S F+RENLYL+CLD+ES AI G+GIRCV L +R ++ LRV+ CL+ AG DV++SDADA+WL DP DF+ +S++VA+R P L H+WG+T+CMGF FFRA G + ++ V+ E+V + +DQ +VN+A LG+VWD SDM + S G G I+++ + P +VTLLPH+ Y R C TPIS +T VAHC+ KGE M+TWMK A+LW+
Sbjct: 79 PRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESV-AIFDGLGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSAMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPT-SDMDFTNSTRPGTGVIENITANGD-PLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWN 338
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI) HSP 1 Score: 248 bits (634), Expect = 7.650e-77 Identity = 128/263 (48.67%), Postives = 172/263 (65.40%), Query Frame = 3
Query: 3 PRSDPAVVMQVVSKDYIKLQRNFIRLMEKNSDFTRENLYLMCLDDESYRAIHGGMGIRCVPLTSLLRNNNRKQIFTLRVQVVSCLVKAGHDVILSDADALWLADPMKDFSLPTIRESSIVAARGGFPHDLAHQWGSTMCMGFIFFRAEGKRIGEYVAVMNELVLKNANDQVSVNKAAKSLGIVWDKGGSDMRYEKSVTFGGGTIDSLVDDESRPFRVTLLPHSTYPRICEETPISENTRVAHCLWVGKGEVMSTWMKHANLWS 791
P+ PAVV QVVSK Y+ +Q+NFI ME +S F+REN+YL+CLD+ES + G +GIRCV + +R ++ LR++V CL+KAG DV++SDADA+WL DPM DF R+SSIVA+RG P L WG+T+CMGF+ FRA I +++ V+ E + NDQ +VN A + L +VWD SDM + S G G ++S+ ES V+LLPH+ Y R C TPIS T VAHC+ KGE M+TWMK A+LW+
Sbjct: 137 PQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESF-GALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPT-SDMSFSDSTRSGVGVVNSIYSGES--LTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMATWMKEAHLWN 395
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 249 bits (635), Expect = 9.510e-77 Identity = 128/263 (48.67%), Postives = 172/263 (65.40%), Query Frame = 3
Query: 3 PRSDPAVVMQVVSKDYIKLQRNFIRLMEKNSDFTRENLYLMCLDDESYRAIHGGMGIRCVPLTSLLRNNNRKQIFTLRVQVVSCLVKAGHDVILSDADALWLADPMKDFSLPTIRESSIVAARGGFPHDLAHQWGSTMCMGFIFFRAEGKRIGEYVAVMNELVLKNANDQVSVNKAAKSLGIVWDKGGSDMRYEKSVTFGGGTIDSLVDDESRPFRVTLLPHSTYPRICEETPISENTRVAHCLWVGKGEVMSTWMKHANLWS 791
PRS PAVV QVVS+ Y L+ NFI ME +S F+RENLYL+CLD+ES AI G+GIRCV L +R I+ LR+ V CL+ AG DV++SDADA+WL DP D + +S++VA+R P L H+WG+T+CMGF FFRA G + ++ V+ E+ + NDQ++VN+A L +VWD SDM + + G G I+++ D +VTLLPH+ Y R C TPIS +T VAHC+ KGE M+TWMK A+LW+
Sbjct: 154 PRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESV-AIFDGLGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGSAMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPM-SDMNFTDNTRPGTGVIENITVDGGS-LKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWN 413
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI) HSP 1 Score: 218 bits (555), Expect = 5.910e-67 Identity = 104/180 (57.78%), Postives = 132/180 (73.33%), Query Frame = 3
Query: 258 VKAGHDVILSDADALWLADPMKDFSLPTIRESSIVAARGGFPHDLAHQWGSTMCMGFIFFRAEGKRIG--EYVAVMNELVLKNANDQVSVNKAAKSLGIVWDKGGSDMRYEKSVTFGGGTIDSLVDDESRPFRVTLLPHSTYPRICEETPISENTRVAHCLWVGKGEVMSTWMKHANLWS 791
V+AGHDV++SDADALWLADPMKDFSLP + SSIVA+RG FP ++ H WG+T+CMGFI FR R+ E+V VMN LVL+ +DQ++VN AA+ LGIVW++ SDMRY +S FG G IDSL DD+++PF VTLLPHS Y RIC TP+S T VAHC+ + + WM +LW+
Sbjct: 64 VEAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWA 243
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE) HSP 1 Score: 214 bits (545), Expect = 3.440e-64 Identity = 139/343 (40.52%), Postives = 178/343 (51.90%), Query Frame = 3
Query: 21 VVMQVVSKDYIKLQRNFIRLMEKNSDFTRENLYLMCLDDESYRAIHGGMGIRCVPLTSLLRNNNRKQIFTLRVQVVSCLVKAGH-DVILSDADALWLADPMKD-FSLPTIRESSIVAARGGFPHDLAHQWGSTMCMGFIFFRAEGKR-IGEYVAVMNELVLKNANDQ-----------------------------------------------------VSVNKAAKSLGIVWDKGGSDMRYEKSVTFGGGTIDSLVDDESR----------------------------PFRVTLLPHSTYPRICEETPISENTRV-AHCLWVGK-GEVMSTWMKHANLWS 791
+ + VVS+ YI ++RNFIRLME+NS FTR N+YLMC+D S MGIRCVP+ S L + I+ LRV+VVSCL++ GH DVI+SDADALWLADP KD FS I+A+RG +P++ + +WGST+CMGFI FRA + ++ VM +LV++N +DQ +SVN+AAK LGIVWDK SDMRYE+S +G G I L + PFRV LLPHS Y R C +S T V AHC + K V ++WMK ANLWS
Sbjct: 1 MTVPVVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPM-SALDLPTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKN-SDMRYEESTGYGRGVIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVILLPHSAYTRRCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWS 341
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 174 bits (440), Expect = 7.220e-51 Identity = 86/149 (57.72%), Postives = 112/149 (75.17%), Query Frame = 3
Query: 81 MEKNSDFTRENLYLMCLDDESYRAIHGGMGIRCVPLTSLLRNNNRKQIFTLRVQVVSCLVKAGHDVILSDADALWLADPMKDFSLPTIRESSIVAARGGFPHDLAHQWGSTMCMGFIFFRAEGKR--IGEYVAVMNELVLKNANDQVSV 521
ME + FTR +LYLMCLDD+S MGI C+PL+ L ++ +QI+ LRV+VVSCL +AGHDVI+SDADALWLADPMKDFSLP + +SSIVA+RG P ++ WG+TMCMGFI FRA R +G++V VMN LV ++ +DQ++V
Sbjct: 1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGL-NISSHEQIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Match: A0A7S0SXH7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXH7_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 3.790e-20 Identity = 58/204 (28.43%), Postives = 111/204 (54.41%), Query Frame = 3
Query: 120 LMCLDDESYRAIHGGMGIRCVPLTSLL------RNNNRKQIFTLRVQVVSCLVK-AGHDVILSDADALWLADPMKDFSLPTIRESSIVAARGGFPHDLAHQWGSTMCMGFIFFRAEGKR---IGEYVAVMNELV--LKNANDQVSVNKAAKSLGIVWDKGGSDMRYEKSVTFGGGTIDSL--VDDESRPFRVTLLPHSTYPRIC 689
++C+DD S+ + +G+ CV + + +N+ + I+ R++++S L+ DVIL+D D+LW+ P+ D S+ + SSIV++R +PH+L WG+T+CMGFI+F+A+ + + M++ + + +DQ++ N+ I W ++K ++ G I ++ + + + +TLLPH Y R C
Sbjct: 1 IICIDDSSFNQLLD-IGLYCVLSNNFVSDKSFNKNDYKHNIWLRRIEILSHLINNENQDVILTDLDSLWINSPLNDISIHSA-SSSIVSSRAWWPHELWSVWGATLCMGFIYFKADEFSKYFVNKIYLTMSDNINNYRKVDDQITANEELYKNQIEW--------FDKPMSVGNNAIANIGSISYNNMSYSITLLPHYKYIRNC 194
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Match: A0A482S083_9ARCH (Nucleotid_trans domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S083_9ARCH) HSP 1 Score: 82.8 bits (203), Expect = 1.960e-14 Identity = 46/174 (26.44%), Postives = 90/174 (51.72%), Query Frame = 3
Query: 15 PAVVMQVVSKDYIKLQRNFIRLMEK--NSDFTRENLYLMCLDDESYRAIHGGMGIRCVP----------LTSLLRNNNRKQIFTLRVQVVSCLVKAGHDVILSDADALWLADPMKDFSLPTIRESSIVAARGGFPHDLAHQWGSTMCMGFIFFRAEGKRIGEYVAVMNELVLKN 500
P V+ ++ Y ++ +N++ + + + +NL ++C+D +H +RC P S ++ + ++ R+++++ + DV++SD DA WL P D +L + +S IVA+RG FP ++ QWGST+CMGF++ +A + V+ ++ L N
Sbjct: 62 PHRVLLLLDSKYFEVFQNWLMYYKGVCPGEASDKNLEIVCMDIAVTDMLHNHTALRCSPHYTAPSPASISVSNAASSFKSSVWIKRLEIINMFLMQQQDVLVSDTDAFWLRSPYTDLTLLS-EQSDIVASRGWFPIHISEQWGSTLCMGFLYIKASDFTRDVFNRVLGDMHLTN 234 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105.784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig105.784.1 >prot_Ecto-sp8_S_contig105.784.1 ID=prot_Ecto-sp8_S_contig105.784.1|Name=mRNA_Ecto-sp8_S_contig105.784.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=259bp MQVVSKDYIKLQRNFIRLMEKNSDFTRENLYLMCLDDESYRAIHGGMGIRback to top mRNA from alignment at Ecto-sp8_S_contig105:16288..17720+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig105.784.1 ID=mRNA_Ecto-sp8_S_contig105.784.1|Name=mRNA_Ecto-sp8_S_contig105.784.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1433bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105:16288..17720+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105:16288..17720+ >mRNA_Ecto-sp8_S_contig105.784.1 ID=mRNA_Ecto-sp8_S_contig105.784.1|Name=mRNA_Ecto-sp8_S_contig105.784.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105:16288..17720+ (Ectocarpus species8 EcLAC_412)back to top |