mRNA_Ecto-sp8_S_contig10499.783.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10499.783.1
Unique NamemRNA_Ecto-sp8_S_contig10499.783.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10499.783.1 vs. uniprot
Match: D8LKY8_ECTSI (Pleckstrin homology (PH) domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY8_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 5.110e-33
Identity = 86/112 (76.79%), Postives = 86/112 (76.79%), Query Frame = -3 
Query:    2 NSEEVEVEERIVVRKPPPVLVAMSRGTSATSSTVGGAGDYGEYDEGFGDDARSAAGSSGSGSGSSRDSSLLLTAVSPSRVPPPLVSVASSATLPPVSMASSVVSGGSFSNPW 337
            NSEEVEVEERIVVRKPPPVLVAMSRGTSAT             DE FGDDARSAAGSSGSGS  SRDSSLLLTAVSPSRVPPPLVSVAS  TLPPVS ASS   GG    PW
Sbjct:  929 NSEEVEVEERIVVRKPPPVLVAMSRGTSATXXXXXXXXXXXXXDEVFGDDARSAAGSSGSGS--SRDSSLLLTAVSPSRVPPPLVSVASWGTLPPVSRASSCSLGGLVLQPW 1038
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10499.783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKY8_ECTSI5.110e-3376.79Pleckstrin homology (PH) domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10499contigEcto-sp8_S_contig10499:2417..2756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size340
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143148.0351448-CDS-Ecto-sp8_S_contig10499:2416..27551681143148.0351448-CDS-Ecto-sp8_S_contig10499:2416..2755Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10499 2417..2755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10499.783.1prot_Ecto-sp8_S_contig10499.783.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10499 2417..2755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10499.783.1

>prot_Ecto-sp8_S_contig10499.783.1 ID=prot_Ecto-sp8_S_contig10499.783.1|Name=mRNA_Ecto-sp8_S_contig10499.783.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=113bp
AKGWRTSPPRLPRRPSTPGGGSPKMRPRRGGGAPATGRPRSARGTSRGWT
RTRTRTIPPRNARRPRSPRRIRRSRRLPPPCWRWRSCPWTWPPGLGAASG
QRSSPPPPLPRCC
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mRNA from alignment at Ecto-sp8_S_contig10499:2417..2756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10499.783.1 ID=mRNA_Ecto-sp8_S_contig10499.783.1|Name=mRNA_Ecto-sp8_S_contig10499.783.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=340bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10499:2417..2756+ (Ectocarpus species8 EcLAC_412)
GCCAAGGGTTGGAGAACGAGCCCCCCGAGACTACCGAGGAGGCCATCGAC
ACCGGGGGGAGGGTCGCCGAAGATGCGACCGAGACGAGGGGGGGGGGCAC
CCGCGACGGGGAGACCGCGGTCAGCAAGAGGGACGAGTCGCGGCTGGACC
CGGACCCGGACCCGGACGATCCCGCCGCGGAACGCGCGTCGTCCCCGAAG
CCCTCGTCGTATTCGCCGTAGTCGCCGGCTCCCCCCACCGTGCTGGAGGT
GGCGCTCGTGCCCCTGGACATGGCCACCAGGACTGGGGGCGGCTTCCGGA
CAACGATCCTCTCCTCCACCTCCACTTCCTCGCTGTTGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10499:2417..2756+

>mRNA_Ecto-sp8_S_contig10499.783.1 ID=mRNA_Ecto-sp8_S_contig10499.783.1|Name=mRNA_Ecto-sp8_S_contig10499.783.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10499:2417..2756+ (Ectocarpus species8 EcLAC_412)
GCCAAGGGTTGGAGAACGAGCCCCCCGAGACTACCGAGGAGGCCATCGAC
ACCGGGGGGAGGGTCGCCGAAGATGCGACCGAGACGAGGGGGGGGGGCAC
CCGCGACGGGGAGACCGCGGTCAGCAAGAGGGACGAGTCGCGGCTGGACC
CGGACCCGGACCCGGACGATCCCGCCGCGGAACGCGCGTCGTCCCCGAAG
CCCTCGTCGTATTCGCCGTAGTCGCCGGCTCCCCCCACCGTGCTGGAGGT
GGCGCTCGTGCCCCTGGACATGGCCACCAGGACTGGGGGCGGCTTCCGGA
CAACGATCCTCTCCTCCACCTCCACTTCCTCGCTGTTGC
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