mRNA_Ecto-sp8_S_contig10499.782.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10499.782.1
Unique NamemRNA_Ecto-sp8_S_contig10499.782.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10499.782.1 vs. uniprot
Match: D8LKY8_ECTSI (Pleckstrin homology (PH) domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY8_ECTSI)

HSP 1 Score: 492 bits (1266), Expect = 4.030e-157
Identity = 321/416 (77.16%), Postives = 324/416 (77.88%), Query Frame = 1 
Query:    1 RLCMRELSTRNSVVARERGYGSSRNQVQDDARAQRRXXXXXXXXXXXXXXSSPQSWSVASHSPMAASAPRSVWVPGKNGSHKTSSLRLVEFCLPPWAGVRTSCGCLSHTELIWGKDSLAAGGQDQGLGGVAGVMSEVGWSPNGGDWRNVGVGAAPHSDLRQSGGTPQTRSGTTSPRKATLVISMRPSEPMGLRLRDVHPECGGGVVVIGFERSAAGKRAGVLQGDRITEVNGIYVSRTNDIVWALQQQXXXXQHPGIGGLRFSGSGGNRRQVNLTVLRGFPDSEKPWLPRLTLEPSPTATVLTPPSSAVESPASGEDDDDAGVPSPVLSAPGRKTFSGRGTSGNNTLGFAGFYSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPRVPENINVNTPVAPSPEAVLSAPGRKTFSG 1248
            RLCMRELST NSVVARERGYGSSRNQV DDARAQR XXXXXXXXXXXXXX SPQSWSVASHSPMAASAPRSVWVPGKNGSHKTSSLRLVEFCLPPWAGVRTSCGCLSHTEL WGKDSLAAGGQDQGLGGVAG MS VGWSPNGGD RNVGVGAAP+SDLRQSGGTPQ RSGTTSPRK  LVISMRPSEPMGLRLRDVHPECGGGVVVIGFERSAAGKRAGVLQGDRITEVN                                                                              ESPASGEDD+DA VPSPVLSAPGRKTFSGRGTSGNNTLGFAGFYSGXXXXXXXXXXXXXXXXXXXXXXXXXXX TTPRVP+NI VNTPVAPSPEAVLSAPGRKTFSG
Sbjct:  405 RLCMRELSTSNSVVARERGYGSSRNQVVDDARAQRXXXXXXXXXXXXXXXXSPQSWSVASHSPMAASAPRSVWVPGKNGSHKTSSLRLVEFCLPPWAGVRTSCGCLSHTELTWGKDSLAAGGQDQGLGGVAGGMSGVGWSPNGGDSRNVGVGAAPYSDLRQSGGTPQPRSGTTSPRKVALVISMRPSEPMGLRLRDVHPECGGGVVVIGFERSAAGKRAGVLQGDRITEVN------------------------------------------------------------------------------ESPASGEDDEDASVPSPVLSAPGRKTFSGRGTSGNNTLGFAGFYSGXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTPRVPDNITVNTPVAPSPEAVLSAPGRKTFSG 741
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10499.782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKY8_ECTSI4.030e-15777.16Pleckstrin homology (PH) domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10499contigEcto-sp8_S_contig10499:2374..6819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score494.6
Seed ortholog evalue4.7e-137
Seed eggNOG ortholog2880.D8LKY8
Model size2197
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
EggNOG OGsCOG5422@1,KOG4424@2759
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-11_006060.1
Cds size1296
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10499.782.1prot_Ecto-sp8_S_contig10499.782.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10499 3266..6810 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143148.0609822-UTR-Ecto-sp8_S_contig10499:2373..32651681143148.0609822-UTR-Ecto-sp8_S_contig10499:2373..3265Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10499 2374..3265 -
1681143148.1137822-UTR-Ecto-sp8_S_contig10499:6810..68191681143148.1137822-UTR-Ecto-sp8_S_contig10499:6810..6819Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10499 6811..6819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143148.0713584-CDS-Ecto-sp8_S_contig10499:3265..38761681143148.0713584-CDS-Ecto-sp8_S_contig10499:3265..3876Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10499 3266..3876 -
1681143148.0800905-CDS-Ecto-sp8_S_contig10499:4559..47181681143148.0800905-CDS-Ecto-sp8_S_contig10499:4559..4718Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10499 4560..4718 -
1681143148.089129-CDS-Ecto-sp8_S_contig10499:5167..52641681143148.089129-CDS-Ecto-sp8_S_contig10499:5167..5264Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10499 5168..5264 -
1681143148.0987933-CDS-Ecto-sp8_S_contig10499:5845..62051681143148.0987933-CDS-Ecto-sp8_S_contig10499:5845..6205Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10499 5846..6205 -
1681143148.106158-CDS-Ecto-sp8_S_contig10499:6741..68101681143148.106158-CDS-Ecto-sp8_S_contig10499:6741..6810Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10499 6742..6810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10499.782.1

>prot_Ecto-sp8_S_contig10499.782.1 ID=prot_Ecto-sp8_S_contig10499.782.1|Name=mRNA_Ecto-sp8_S_contig10499.782.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=432bp
MRELSTRNSVVARERGYGSSRNQVQDDARAQRRRRQHATCSPPGSSSSSP
QSWSVASHSPMAASAPRSVWVPGKNGSHKTSSLRLVEFCLPPWAGVRTSC
GCLSHTELIWGKDSLAAGGQDQGLGGVAGVMSEVGWSPNGGDWRNVGVGA
APHSDLRQSGGTPQTRSGTTSPRKATLVISMRPSEPMGLRLRDVHPECGG
GVVVIGFERSAAGKRAGVLQGDRITEVNGIYVSRTNDIVWALQQQQQQQQ
HPGIGGLRFSGSGGNRRQVNLTVLRGFPDSEKPWLPRLTLEPSPTATVLT
PPSSAVESPASGEDDDDAGVPSPVLSAPGRKTFSGRGTSGNNTLGFAGFY
SGGGGGGNSAATAVNYSPEEPPPSAATASSTTPRVPENINVNTPVAPSPE
AVLSAPGRKTFSGGGGGGGGARHAGPARAAA*
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mRNA from alignment at Ecto-sp8_S_contig10499:2374..6819-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10499.782.1 ID=mRNA_Ecto-sp8_S_contig10499.782.1|Name=mRNA_Ecto-sp8_S_contig10499.782.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4446bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10499:2374..6819- (Ectocarpus species8 EcLAC_412)
AGGCTGTGCATGAGGGAGCTCTCCACCAGGAACAGCGTGGTGGCTCGCGA
GAGGGGTTACGGCAGCAGCAGAAATCAGGTTGGTGGAGGTGGAGACAAGT
CTTGACGAGAACCACATACCACGTACTGCTGTAGTGACTGACAAGCCAAT
AAAAACAAGAAGAATCAGAAGGTTGTGGTAATGTGGTAATAGCGTGATTG
GCGGGCACCTTGGTTAACGGAAAATCGTGACTATCCGGGCTTGCATGTTG
TGTTGATGCATGCCTTTCGTCAACAGAGAGTTTCCCGGTACGGGATACGT
ACACCCACAATGTGTTATTTTGGTGTGGCAGCGATGGCGACGCCAACATG
GAGGGAGGGAGGGAGAGATGAAGGGAGGGAGGGAGGCAAACTCAGGCTCA
AACCATCATATCCAGCACCCAGCAAGTTTTTTCTCACCGCATAGCTATGT
GAAGACTTCAAACATCCCCCTTTGGTTGAACTATTTTAGTATATTATCTA
GACCGGGTATATAGTCTTTCTCTGTGAGTGCTGTAGTACGTATACTTGGT
CATTAATACCCCCCAAGTCTTTCACCGCAACATAAGCTCACCACACCAAC
ACTTCTCGCCGCAGGTACAGGACGACGCGCGTGCCCAGCGGCGGCGGCGG
CAGCACGCCACGTGCAGCCCCCCCGGGAGCAGCAGCAGCTCGCCCCAAAG
CTGGTCCGTGGCCTCCCACAGCCCCATGGCAGCCTCCGCCCCCCGTTCCG
TCTGGGTGCCCGGCAAGAACGGCAGCCACAAGACGAGCAGCCTGAGGCTG
GTGGAGTTCTGCCTTCCGCCGTGGGCGGGGGTAAGGACGTCGTGCGGGTG
CTTGAGCCACACAGAGCTAATCTGGGGGAAGGATAGCCTCGCCGCGGGGG
GGCAGGACCAGGGCCTGGGCGGGGTGGCGGGCGTGATGAGCGAGGTCGGG
TGGTCGCCGAACGGCGGAGACTGGGTGAGTGACAGCAGTGGGAGGGTGGC
CGGGTTTTGCTGCTGCCGGCTCTGGGTGTGTGGTGGTTGCTACGAGTTGA
CGATGATCTCGCTTATTAGCCCCAGGCGTGTTTTTCACTCCCGACAAGTT
TGTTTCGGCATTTTTCGGCAATCGATTAGTGCGCCTTGCGGGTGTGTTGC
GGCTGGTGATGAGGAGATGGTGGGGACACGGCTGGCTCACAGCAGCATCA
GACGTGGGGCACGGCCGACGTTACACTGGACTGACTCCCTCTCCGCTGAC
CAAGTTTGACGAAGACGTTTGCGTGTTATTAGCATGTAGACTACGCTAAT
GCTAACCGGCTCACCAATGGAAAGACGTCAGTGTCAGTCAGTGCGGTTGA
CACCAGAAAGTGCTTCTATAGGCTACCATGATCTGGGACCCCGTGAGGGG
GCGTCATGGGTGTGTGTGTCTATTTCGCTCACTATTATTGCCGCACTCTT
TGTGTTGTCGTGTGTCGTCCCTCTCTTGTGCTGTGCCCTTCGTTTCGTCG
CTTGTTTCGTATCGTTTGTCGTCTCCCTTTTTGCTGGGTCCTTGTTTGCC
GACAGCGAAACGTGGGCGTCGGCGCTGCTCCGCATTCTGACCTGCGGCAG
TCCGGGGGTACCCCACAGACGAGAAGCGGGACAACTTCTCCGAGAAAGGC
GAGTCAGCCGAATATCGTCATCGTCCAGTCAACACCGTACATAAATCGAA
TCCCCTGCTCCACACTCTCGGTTGCTTGTATAGTCTCAAGATCCGGAAAA
TACGGGATGGCAATCCACACAAATGCATGGCGCCTGTTAGCGTGACATGA
TCTCTGTTTCTTTACCAAGGTGCTTGTACTGGCAATGACGATGTTGGCGG
CTTTCCGGAAGGGCTGTGGAGCAAAGCTGAACGTATCTTGTGCACGGCGC
AGACCAGTCTAGTCTAGCGAGGGAAAGACACTTGGATGTCCCCTTCTTGT
GTCCGCCGTTGGAAGCTCAGCCTGATCTATGTGTCTCGGAACTAATTCCT
AAGTGCCCACTTCGATCCCAACGCCCAGCACTCATGGTTTCAAGCTCACC
GCTCGTACGCACGTTTCTCTCTCTCGCTGTGTTTTTTAACCCATCAGGTA
GCCCTTGTGATCTCGATGAGGCCTTCGGAGCCCATGGGGCTGAGACTGCG
AGACGTCCACCCGGAGTGTGGGGGGGGTGTCGTGGTGATCGGTTTCGAGA
GGTCGGCGGCGGGGAAGCGGGCTGGCGTGCTGCAGGGGGACCGGATCACC
GAAGTCAACGGTGAGCTCCTTTAGCGGTCCTCCGTTGTCGATTGCAAGGC
GGGACGGAGCTCGTCGTGCGTTATACAAATTCATATGCGATACCACCTGA
TTGGCGGTTTCGTGTGGCAGAGTTTGGGAGGCGGAAAAAAACGCCTCCCG
GCGGCCGTCGTGCATGGCCCGCTGCCAAATTATTATTTTTATTATTATTT
TTTGTCTTCACTTCAAAGCAGCTCTCACAGCACTAGTGCCGTTTACTCCA
ACCCGTGGTCACACAGAAGAGCCCCTCTCTGCCCTCCCCTCCTGCTGTAC
TTTGCCTTCGATTTTTAATGCGAGAAGAGTTCAGCACTCTCTTCCCTCTG
TGTATACACGAACGAACTAGCGCCATCCACTAGGCCAGGAGCGGAAGCGA
GAGAAAAACCCATTTTGAAAGAAAAGCTCGCTTACGCCGGGATTCGAGCC
CCTGACCTGACCTCTAGAAGGTTTTTGAGGATACCAACTAGACCACCGGG
GCGACCCAGATATTGGCCCCGCGTTGACAGGGGAACCAGAATAAAGTTGA
CCCTTTGTGGTTGTGGCTCATAACTCATCATTTGAGTTGTATTTTGAATA
GTGGGTGATGTTGCTCAGCGTGTACCCCTCCCACCGACCACCACCACCAT
GCGCATCCACACCTCACCTGTCCGTTTTCTGGGCGCACGACAGGAATATA
CGTATCGAGGACAAACGACATCGTCTGGGCGCTGCAGCAGCAGCAACAAC
AACAGCAGCACCCCGGGATCGGCGGTCTCCGTTTCAGCGGCAGTGGCGGC
AACAGGCGACAAGTTAACCTAACCGTCCTCCGCGGCTTCCCCGACAGCGA
GAAGCCGTGGCTGCCTCGCCTGACCCTAGAACCGTCACCGACGGCAACGG
TCCTCACACCCCCGAGCAGCGCGGTAGAGTCTCCCGCTAGCGGTGAAGAC
GACGACGATGCGGGCGTGCCGTCTCCCGTGCTGTCCGCTCCGGGCCGGAA
AACGTTCAGCGGGCGCGGCACCTCGGGGAACAACACCCTGGGCTTTGCCG
GCTTTTACAGCGGCGGCGGCGGCGGCGGCAACAGCGCGGCAACGGCGGTC
AATTACAGCCCCGAGGAGCCGCCGCCGTCGGCGGCAACCGCGAGCTCGAC
GACGCCGCGGGTGCCCGAGAACATCAACGTGAACACGCCGGTGGCCCCAA
GCCCCGAGGCCGTGCTTTCGGCTCCCGGCCGCAAGACGTTCAGCGGTGGT
GGCGGCGGTGGCGGCGGCGCGCGGCACGCCGGTCCGGCAAGAGCGGCAGC
CTAGGGTTCGGCTTCTCCGGCGCGGACGACGAACAAGAACCGGCGCCGAC
CCTAACCCAGCAGCAGCGGCGGCAGCGAGCCTTCCTATCGACGACGGCGA
CGACCGTGGAGCTTGGAAAGAGCGGCGGCGGCGGCGGCAGCAGCAGCAGC
CACGCGCTTACCCTAGCCGTGGACAACCCTCCCAGCCCGGACGAAACGAA
GGGCGACGAGGACTCCGGGGAGTGGGGGGATTCGAACGGCTCGGCCGATA
GCACCGGCGGGGGGCGGCCGCTCAAGGTGCCGGCCCCGACCCAGGCTAAC
GTTAACGCCGGCGGGGACCCCGCGGTGCCGTTCGCGACGTTCCGCGGGGG
CGGGAGGGCGACGCCGTCGCGGGAGGGGCAAGGGCGGGGGCAAGGGCGGG
GGCACGAGATGCCGTCGTTGAGGCTCGGGGTCGGCAGCGCGCTCGCGGCC
TGCTGGGGGGTGCAGGAAACCAACGACAACGACGAGAACTCTCGCCCGAC
GGAGTTCGACCTGGGCAACAGCGAGGAAGTGGAGGTGGAGGAGAGGATCG
TTGTCCGGAAGCCGCCCCCAGTCCTGGTGGCCATGTCCAGGGGCACGAGC
GCCACCTCCAGCACGGTGGGGGGAGCCGGCGACTACGGCGAATACGACGA
GGGCTTCGGGGACGACGCGCGTTCCGCGGCGGGATCGTCCGGGTCCGGGT
CCGGGTCCAGCCGCGACTCGTCCCTCTTGCTGACCGCGGTCTCCCCGTCG
CGGGTGCCCCCCCCCCTCGTCTCGGTCGCATCTTCGGCGACCCTCCCCCC
GGTGTCGATGGCCTCCTCGGTAGTCTCGGGGGGCTCGTTCTCCAACCCTT
GGCTATCCCCCACCCCGAACCACCACCACCGGCAGCAGCAGCAGCA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10499:2374..6819-

>mRNA_Ecto-sp8_S_contig10499.782.1 ID=mRNA_Ecto-sp8_S_contig10499.782.1|Name=mRNA_Ecto-sp8_S_contig10499.782.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1296bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10499:2374..6819- (Ectocarpus species8 EcLAC_412)
ATGAGGGAGCTCTCCACCAGGAACAGCGTGGTGGCTCGCGAGAGGGGTTA
CGGCAGCAGCAGAAATCAGGTACAGGACGACGCGCGTGCCCAGCGGCGGC
GGCGGCAGCACGCCACGTGCAGCCCCCCCGGGAGCAGCAGCAGCTCGCCC
CAAAGCTGGTCCGTGGCCTCCCACAGCCCCATGGCAGCCTCCGCCCCCCG
TTCCGTCTGGGTGCCCGGCAAGAACGGCAGCCACAAGACGAGCAGCCTGA
GGCTGGTGGAGTTCTGCCTTCCGCCGTGGGCGGGGGTAAGGACGTCGTGC
GGGTGCTTGAGCCACACAGAGCTAATCTGGGGGAAGGATAGCCTCGCCGC
GGGGGGGCAGGACCAGGGCCTGGGCGGGGTGGCGGGCGTGATGAGCGAGG
TCGGGTGGTCGCCGAACGGCGGAGACTGGCGAAACGTGGGCGTCGGCGCT
GCTCCGCATTCTGACCTGCGGCAGTCCGGGGGTACCCCACAGACGAGAAG
CGGGACAACTTCTCCGAGAAAGGCGACCCTTGTGATCTCGATGAGGCCTT
CGGAGCCCATGGGGCTGAGACTGCGAGACGTCCACCCGGAGTGTGGGGGG
GGTGTCGTGGTGATCGGTTTCGAGAGGTCGGCGGCGGGGAAGCGGGCTGG
CGTGCTGCAGGGGGACCGGATCACCGAAGTCAACGGAATATACGTATCGA
GGACAAACGACATCGTCTGGGCGCTGCAGCAGCAGCAACAACAACAGCAG
CACCCCGGGATCGGCGGTCTCCGTTTCAGCGGCAGTGGCGGCAACAGGCG
ACAAGTTAACCTAACCGTCCTCCGCGGCTTCCCCGACAGCGAGAAGCCGT
GGCTGCCTCGCCTGACCCTAGAACCGTCACCGACGGCAACGGTCCTCACA
CCCCCGAGCAGCGCGGTAGAGTCTCCCGCTAGCGGTGAAGACGACGACGA
TGCGGGCGTGCCGTCTCCCGTGCTGTCCGCTCCGGGCCGGAAAACGTTCA
GCGGGCGCGGCACCTCGGGGAACAACACCCTGGGCTTTGCCGGCTTTTAC
AGCGGCGGCGGCGGCGGCGGCAACAGCGCGGCAACGGCGGTCAATTACAG
CCCCGAGGAGCCGCCGCCGTCGGCGGCAACCGCGAGCTCGACGACGCCGC
GGGTGCCCGAGAACATCAACGTGAACACGCCGGTGGCCCCAAGCCCCGAG
GCCGTGCTTTCGGCTCCCGGCCGCAAGACGTTCAGCGGTGGTGGCGGCGG
TGGCGGCGGCGCGCGGCACGCCGGTCCGGCAAGAGCGGCAGCCTAG
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