mRNA_Ecto-sp8_S_contig10498.781.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10498.781.1
Unique NamemRNA_Ecto-sp8_S_contig10498.781.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Match: D7FNT8_ECTSI (Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT8_ECTSI)

HSP 1 Score: 1028 bits (2658), Expect = 0.000e+0
Identity = 646/759 (85.11%), Postives = 656/759 (86.43%), Query Frame = 1
Query:   19 GGAEVGRLFRAMDHLPQLLATLYQRMKYPPDFAFDPSDEDEGEEDMLRQQLRKHLVNAIRNAPETVLEFICRALSSLPTPLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXXRPASPGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNLISRHAAFACVTTSPFPPSRFKEESRLIPSGSNTSKSLQAARE--------------------ILLLLAHTVRRTHTCTLTSHLSPSRFFFLFFFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLAALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGMLRSVVDGLSGAEDASTKKTCLYIFSLLLGGFNRGRSGGVPAAASAGGANAGEXXXXXXXXXXXXXXXXGAKKGLRAAATQRRALSGKGGGLWTGSGPTVDMEPGVQSAVTAFVCERAVPAALKCLVDGAPPTGLDLRDAAAMSAIVNMGALLKEAREASGGSARFVGVAALACSCTPQVAEQLQLAVEGAADGPAIATALK 2235
            GG  VGRLFRAMDHLPQLLATLYQRMKYPPDFAFDPSDEDEGEEDMLRQQLRKHLVNAIRNAPETVLEFICRALSSLPTPLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXX PA+PGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNL         + T P P      +  L P     +++LQ A                      I   LA  V      +       +      FFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPL+ALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXX    GAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDG+LRSVVDGLSGAEDASTKKTCLYIFSLLLGGFNRGRSGGVPAAA      AGE   XXXXXXXXXXXXX  KKGLRAAATQRRALSGKGGGLWTGSGPTVDMEPGVQSAVTAFVCERAVPAALKCLVDGAPPTGLDLRDAAAMSAIVNMGALLKEAREASGGSARFVGVAALACSCTPQVAEQLQLAVEGAADGPAIA ALK
Sbjct:  393 GGGGVGRLFRAMDHLPQLLATLYQRMKYPPDFAFDPSDEDEGEEDMLRQQLRKHLVNAIRNAPETVLEFICRALSSLPTPLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXX-PAAPGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNLYETIGFLVGMPTVPVPKQVQLLDGVLGPQMRRIAENLQRAASAGAGGGAGLVGEGEKGGDDAIGAELAAGVGAMANVSKGFKPVVAAEVEARFFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLSALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWPNGTTAELPXXXXXXXXXXXXXXXXXXXGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGVLRSVVDGLSGAEDASTKKTCLYIFSLLLGGFNRGRSGGVPAAA------AGEGGAXXXXXXXXXXXXXXTKKGLRAAATQRRALSGKGGGLWTGSGPTVDMEPGVQSAVTAFVCERAVPAALKCLVDGAPPTGLDLRDAAAMSAIVNMGALLKEAREASGGSARFVGVAALACSCTPQVAEQLQLAVEGAADGPAIAAALK 1144          
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Match: A0A6H5KW21_9PHAE (Exportin-T n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW21_9PHAE)

HSP 1 Score: 771 bits (1991), Expect = 6.930e-272
Identity = 509/619 (82.23%), Postives = 525/619 (84.81%), Query Frame = 1
Query:  442 MVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNLISRHAAFACVTTSPFPPSRFKEESRLIPSGSNTSKSLQ-----AAREILLLLAHT-------VRRTHTCTLTSHLSPSRFFFLF--------FFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLAALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGMLRSVVDGLSGAEDASTKKTCLYIFSLLLGGFNRGRSGGVPAAASAGGANAGEXXXXXXXXXXXXXXXXGAKKGLRAAATQRRALSGKGGGLWTGSGPTVDMEPGVQSAVTAFVCERAVPAALKCLVDGAPPTGLDLRDAAAMSAIVNMGALLKEAREASGGSARFVGVAALACSCTPQVAEQLQLAVEGAADGPAIATALK 2235
            MVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNL         +   P P      +  L P     +++LQ      A  +  L+  +       +       + +  + S+ F           F QALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPL+ALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDG+LRSVVDGLSGAEDASTKKTCLYIFSLLLGGFNRGRSGG    A  GGA+A            XXXXXX   K LRAAATQRRALSGKGGGLWTGSGPTVDMEPGVQSAVTAFVCERAVPAALKCLVDGAPPTGLDLRDAAAMSAIVNMGALLKEAREASGGSARFVGVAALAC CTPQVAEQLQLAVEGAADGPAIATALK
Sbjct:    1 MVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNLYETIGFLVGMPNVPVPKQVQLLDGVLGPQMRRIAENLQRVAAAGAGGVAGLVGESEKGGDDAIGAELAAGVGAMANVSKGFKPVVAAEVEARFLQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLSALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGVLRSVVDGLSGAEDASTKKTCLYIFSLLLGGFNRGRSGG-DVGAGKGGASA-------NGPAGXXXXXXXXXKSLRAAATQRRALSGKGGGLWTGSGPTVDMEPGVQSAVTAFVCERAVPAALKCLVDGAPPTGLDLRDAAAMSAIVNMGALLKEAREASGGSARFVGVAALACGCTPQVAEQLQLAVEGAADGPAIATALK 611          
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Match: A0A836CAL0_9STRA (Exportin-T n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL0_9STRA)

HSP 1 Score: 354 bits (908), Expect = 9.140e-105
Identity = 291/751 (38.75%), Postives = 382/751 (50.87%), Query Frame = 1
Query:   43 FRAMDHLPQLLATLYQRMKYPPDFAFDPSDEDEGEEDMLRQQLRKHLVNAIRNAPETVLEFICRALSSLPTPLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXXRPASPGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNLISRHAAFACVTTSPFPPSRFKE---ESRLIPSGSNTSKSLQ-------------AAREILLLLAHTVRRTHTCTLTSHLSPSRFFFLFFFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLL-RALPLAALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGMLRSVVDGLSGAEDASTKKTCLYIFSLLLGGFNRGRSGGVPAAASAGGANAGEXXXXXXXXXXXXXXXXGAKKGLRAAATQRRALSGKGGGLWTGSGPTVDMEPGVQSAVTAFVCERAVPAALKCLVDGAPPTGLDLRDAAAMSAIVNMGALLKEAREASGGSARFVGVAALA---CSCTPQVAEQLQLAVEGAADGPAIATALK 2235
            F AMDH P+LL+ +Y RM++P DF FD  DE++GEE+ LR  LRK LVN  R APE VL F C ALS+LP+PLS LP+P  EAALRL++HF EGC   +                  A+  A  LL  GAFPQMV ALH SD+ARH HPQV++LYF + VRY K+L  G   L P VLEA+C  +GLSNA   +R R+ Y L++LVKA+   +VPYV+ +VP V ALL S     + LSDE+ LNL   +    C+   P  P+  +    E  L P  +   ++L              AA    L     V +  T  L   ++P       F Q LEAA + L++ P H  +RA+ +FLVH ++P LGEG+L R  P  A   LV    G DL E+ Q+LNQ  + +GPK+   +D  L+P IR+ Y L P                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAG+      + L+HEV ER    K   S + HV S+G+ GVL S  NAP LD +L+SV+D L+  +D   KK+C+  F+ +                                            K L   A    AL                  P   + + +FV ERAVPAA+ CL+      GL+++DA A+ A+  +G LL  AR   GG A  V  A       +C     EQL  A+  A D   ++ +L+
Sbjct:  409 FNAMDHAPRLLSVVYARMQFPADFEFDAEDEEDGEEEALRGALRKVLVNTCRAAPELVLRFACEALSALPSPLSALPWPAAEAALRLLYHFSEGCASAA------------------AAANAQALLHEGAFPQMVAALHRSDIARHPHPQVLILYFDIAVRYVKVLRGGGAELTPLVLEALCSERGLSNASRLVRARAAYNLSRLVKALAGDMVPYVEAVVPAVAALLRSGASQGL-LSDESVLNL---YETLGCLVGMPAVPAERRVAYLEGVLAPLLARVHEALAQPQAIAQDPEAAGAALAFCLAGLANVSKGFTKPLPEAVAP-------FTQELEAAAAVLLALPDHPGVRARAIFLVHRMVPVLGEGMLPRVGPACA--ALVARCTGADLEEIVQLLNQFCVAFGPKAFAFMDAMLLPLIRKIYDLMP--------------------------PPVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPLQSPPEPLSHEVLERTALLKQYLSFLTHVVSDGMLGVLCSAANAPQLDAVLQSVLDTLAQVDDPVAKKSCIAAFAAMA-------------------------------------------KELAPDARSAPALP-----------------PAAHAGLQSFVLERAVPAAISCLLS----PGLNVKDANAIGAVNQVGQLLFLARRLQGGGAECVRAALQQQQQVACPAHSVEQLLGALASAEDAQTMSKSLR 1038          
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Match: A0A7S4M7Y7_9STRA (Exportin-T (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M7Y7_9STRA)

HSP 1 Score: 214 bits (545), Expect = 6.730e-56
Identity = 147/430 (34.19%), Postives = 218/430 (50.70%), Query Frame = 1
Query:   43 FRAMDHLPQLLATLYQRMKYPPDFAFDPSDEDEGEEDMLRQQLRKHLVNAIRNAPETVLEFICRALSS-LPTPLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXXRPASPGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNLISRHAAFACVT-----------TSPFPPSRFKEESRLIPSGSNTSKSLQAAREILLLLAHTVRRTHTCTLTSHLS-PSRFFFLFFFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLAALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTP 1293
            F   DHL +LL  +Y +M+YPPDFAFDP DEDE EE++ R +LRK   +A+R+ P+  +EF+   LSS L  PLS  P PD+EAALRL++H  EG                     RP  PGA  L + G F  M++ LHDSDV+ H H +V+MLY+ ++VRY  +L D P  L+ ++L  I GP+GL++    +R+RSCY L KLV +M + + PY +    G+Q+LL+ P   P+ LS + +L L          T           T+   P     ++ L  +   TS  L+   E L +    +       L+   S PS        + L    S L + P    +R+K    +  +I CLG  +L   P + L  LV     +D ++V  ++ QL   +  K+   + G+L+PF+RR     P
Sbjct:  143 FLVADHLHRLLVVVYDQMRYPPDFAFDPEDEDEAEEEVYRSKLRKLHRDAVRSRPDESMEFLSSTLSSRLSAPLSSAPMPDVEAALRLVYHHCEGV--------------------RPP-PGARTLAKDGRFRSMLIGLHDSDVSSHPHGEVLMLYYDVSVRYHPLLRDRPD-LLERLLGCISGPRGLTHPRPRVRSRSCYLLLKLVSSMGKSLRPYAETAAGGIQSLLNDPTYGPL-LSTDDRLYLFETTGVLLGKTGIEPADQRRYLTAVMTPHVHSIQAILSSTEMTTSSDLERCGEALAVAVAAISN-----LSKGFSRPSGEVSSVLGETLPIVLSVLTALPHDETVRSKCGAYLARMIHCLGLAVLPYAP-SYLDALVMHCTVEDAVDVQMIIQQLASRFKGKAVDAISGSLVPFLRRCRDFAP 543          
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Match: A0A448ZS68_9STRA (Exportin-T n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS68_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.320e-53
Identity = 163/570 (28.60%), Postives = 262/570 (45.96%), Query Frame = 1
Query:   61 LPQLLATLYQRMKYPPDFAFDPSDEDEGEEDMLRQQLRKHLVNAIRNAPETVLEFICRALSSLPTPLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXXRPASPGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAM------KEG----VVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNLISRHAAFACVT-TSPFPPSRFKEESRLIPSGSNTSKSLQAAREILLLLAHTVRRTHTCTLTSHLSPSRFFFL-------FFFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLAALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGMLRSVVDGLSGAEDASTKKTCLYIFSLLL 1716
            LP+LL   Y +M+YPPDF +D  D+DE EE+M R +LRK     +R  P+  L+F C+ LS LP PLS  P P++E A+ L++ + EG                     RP  PG   ++R+  F  +++ LH SD+  H H ++++LY++ +VRY  +L +    L+ KVL AI G +GL + D  +R+R CY L +L+K+M      K G    + PYV+  V G+Q+LL++     ++L  +  LNL             SP    ++  +  + P   +    L   +  L         T + ++ +    S+ F            + L+ A S L   P +  +R KT   V  LI CL + +L  +P   L +L++  +  D+++V+Q++NQL I++  K+  +LD  L+PF+++ + L+    S                                                             E   +  H   E    QKL F+V+ HV +N + GVL S  NA  L+ +L+S+ +G    ED+  KKTCL  F LLL
Sbjct:  429 LPKLLTITYNQMRYPPDFQYDFEDDDEAEEEMYRTELRKLNKKFVRANPDLCLQFTCQILSQLPLPLSTAPTPNVEVAISLVYQYCEGI--------------------RPP-PGMKVVMRNETFCNLLVGLHTSDITEHPHREILILYYETSVRYYPLLKERSD-LLQKVLGAITGTRGLQHEDAKVRSRCCYLLLRLIKSMGTSGNKKSGGNCLLRPYVETAVSGIQSLLENKS---IELRVDDTLNLFETIGLLLGKNGLSPSEQGQYLTQV-MTPHVRSIETILNDKKHELAQDPDAYGETLSNSVAAIAYLSKGFKKPPIEVQNVLLETLKVAFSVLEMLPNNEEVRNKTYIFVQRLIQCLEDKVLDVMP-RLLFILIKHCNSGDILDVSQLINQLCIKFRAKAMCVLDSNLLPFLQKCHHLSNTVVSENSSAQERHQ--------------------------------------------------GEDATVAPHLRTEELSIQKLSFAVLNHVVANDVTGVLLSSANASSLEAILQSMSEGAINVEDSLMKKTCLIFFRLLL 921          
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Match: B7G7L1_PHATC (Exportin-T n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7L1_PHATC)

HSP 1 Score: 207 bits (528), Expect = 1.360e-52
Identity = 159/567 (28.04%), Postives = 254/567 (44.80%), Query Frame = 1
Query:   58 HLPQLLATLYQRMKYPPDFAFDPSDEDEGEEDMLRQQLRKHLVNAIRNAPETVLEFICRALS-------SLPT-----PLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXXRPASPGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLA-DGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNLISRHAAFACVTTSPFPPSRFKEESRLIPSGSNTSKSLQAAREILLLLAHTVRRTHTCTLTSHLS-----PSRFFFLFFFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLAALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGMLRSVVDGLSGAEDASTKKTCLYIF 1704
            HLPQ L  LYQ++KYP DF+F+  D++  EE+  R++L K  V  +R AP T  +F+C A +       S  T      +S  P PDLEA LRL++ + EG                     RP +PG    +++  F  +++ALH+S +A H H +++  Y+ + VRY  +        L+ +VL+A+ G +GL +    +R+R CY L +LVKA+   + P+V+  V G+Q LL +     ++L  +  L L          T    P         + P   +  KSLQ  R +        R   +    +HLS     P++   L   + +      + + P H  +R KTM L+  +I CLG+ +L  +P   L +L++  + +D++ V+Q+ NQL I++   S  ++DGALMPF+R+ Y L P                                                                A    +  H   E+   QKL F V+QH+ ++  + VL SPTN  +L+ +LRS+ DG     D   +KTC+  F
Sbjct:  430 HLPQTLNILYQQIKYPKDFSFNFIDDENAEEEQYREELGKLYVKLVRVAPTTCFQFVCEAAAQWLDRTNSSNTNDGCITMSNAPTPDLEATLRLLYKYCEGI--------------------RP-TPGMKTAMKNQTFCALLVALHESPIANHGHFEILCWYYDVAVRYYPIFQHSNHTILLSRVLDAMTGARGLQHGHARVRSRCCYLLLRLVKAIAPLLRPFVETAVAGIQGLLTN---TTLELRPDDTLYLFETIGLLLGKTGIDAPEQARYLTLVMTPHVRSIEKSLQDPRLLQDTEFFGDRLAQSIAALAHLSKGFSKPAQSIQLVLMETVNITQIIMEALPNHEQVRNKTMVLLPRMIQCLGDQVLDKIP-RFLYILIEHCNSEDVLFVSQIFNQLCIKFKEASVPVIDGALMPFLRKCYALVPATDDV-----------------------------------------------------------AGTSDVPPHLRTEQLSIQKLTFVVLQHIVTHNASAVLMSPTNVGNLESVLRSMSDGAVYVTDPIVQKTCVKFF 912          
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Match: B8C3C8_THAPS (Exportin-T n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3C8_THAPS)

HSP 1 Score: 197 bits (502), Expect = 4.290e-49
Identity = 160/561 (28.52%), Postives = 251/561 (44.74%), Query Frame = 1
Query:   61 LPQLLATLYQRMKYPPDFAFDPSDEDEGEEDMLRQQLRKHLVNAIRNAPETVLEFICRALSSLPTPLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXXRPASPGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAM-KEGVVPYVDVIVPGVQALLDSPQGNPMDLSDEAKLNLISRHAAFACVTTSPFPPSRFKEESRLIPSGSNTSKSLQA---AREI-----LLLLAHTVRRTHTCTLTSHLSPSRFFFLFFFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLAALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGMLRSVVDGLSGAEDASTKKTCLYIFSLLL 1716
            L ++L+ L +RMKYP  F F        EE++ R  LRK     +R  P+ VL F+  +LSSLP PLS +   D+E ALRL+ H+GEG                     RPA PGA   LR   F +MV ALH SDV+ H H +V++LY+ L+VRY+ +L D PP L+  +L A+ G +GL +    +R+R CY L +LVK++  + + PYV+V+V G+Q LL  P  N + L     L L          T       +    + L P   +  K+LQ+   AR++      L ++ +     +    +H  P     L    A++   S L++ P    +R +T  L+  +I CLGE +L  +P     +L      +D+++V+Q+LNQL I++   +A  +D AL+PF+++   +     S                                                            A       H V E+   +K  F+ +QH++++  + V  S  N      +L  + DG +   D   KKTC+   S L+
Sbjct:  600 LQRVLSILQERMKYPSSFDFXXXXXXXAEEEVYRTHLRKLYQRIVRFKPQMVLHFMAASLSSLPQPLSMVSTSDMEVALRLVHHYGEG--------------------RRPA-PGAKTALRDAQFREMVTALHRSDVSSHPHREVLLLYYDLSVRYASLLKDSPPELLSGLLGALSGDRGLQHPHARVRSRCCYLLLRLVKSVGAKAMRPYVEVVVDGIQRLL-FPSTNILQLPANEALYLFEITGTLLGTTGLDNEVQQRCATAVLTPHVQSIEKTLQSPDLARDVEQYGEQLSMSISAIAQLSKGWQNHPPPEVQAVLV--AAVDVCRSVLVALPSSPLVRNRTAVLLQRMILCLGERVLPTMPAFLDALLSHCSTEEDVLDVSQLLNQLCIKFKENAAPAIDVALLPFLQKVLTMQLSETSVVPT--------------------------------------------------------ASCVAPPPHLVTEQLSIRKQAFATLQHIATHNASAVFFSERNVGSFGDILSLMNDGATTVPDPVMKKTCVVYMSELV 1080          
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Match: A0A7S2DK11_9STRA (Exportin-T n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DK11_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.870e-45
Identity = 161/583 (27.62%), Postives = 252/583 (43.22%), Query Frame = 1
Query:   31 VGRLFRAMDHLPQLLATLYQRMKYPPDFAFDPSDEDEG----EEDMLRQQLRKHLVNAIRNAPETVLEFICRALSSLPTPLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXXRPASPGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALL---DSPQGNPMDLSDEAKL--------NLISRHAAFACVTTSPFPPSRFKEESRLIPSGS-----NTSKSLQAAREILLLLAHTVRRTHTCTLTSHLSPSRFFFLFFFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLAALLVLVQE--------GDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGMLRSVVDGLSGAEDASTKKTCL 1695
            +G  F A+  +P+LL+ +YQ++ Y      +P  ++E     EE++ R ++R+  +  IR  PE  LEF+C  LS L  PLS L +P  EAALRL++HFGEG G                       P    L +SGAFP ++ A+H SD+  H H  V  LY +L+VRY K L +G P L+  VL+ +C    L++   TLR R C+ L  +VK +   V P+  V++ GV+ +L   DSP G+    SD   L        N  +R           F      +   LI         +T   +  +  + L    T+ ++ +   TSHLS      + +   L+ +  AL +   H  +R+K M ++H ++ CL   LL  L    + +LV              D+ ++  ++NQL I+Y  +   +L+  LM  + R     P                                                                 + QQ   H+ + R   Q+  F V+QHV+++GL+ VL  PTN PHL+ +L +VV G+   +D   KKTC+
Sbjct:   99 IGHHFVALSEIPKLLSVIYQQLHYSESSNSEPDGDEEALEEAEEEVHRGRIRRLFLKCIRVVPELSLEFVCSMLSELQPPLSDLRWPRAEAALRLVYHFGEGLG-----------------------PKNQTLCQSGAFPTVLAAVHQSDIGMHPHWCVKTLYLELSVRYVKRL-EGQPELVRLVLDRMCS--SLTSPHHTLRARVCFLLKSMVKTLGADVTPFAVVVLNGVRQILFMVDSPLGD----SDRTHLFEIGALLINYATRVPEQQAAHLESFVRPLLNDVEALIGQAQLATHEDTRHFMGNSVALKLSYLATLSKSSSRD-TSHLS------VVYGTILQVSVKALTAMVTHPMVRSKFMVVLHRMVSCLDNALLLDLLPQPMELLVSHQPTVSSDMSTESDVEDLVAMVNQLMIKYHIRLGPVLEPLLMVLLSRLVDRMPSD---------------------------------------------------------------DKQQ--PHDRSIRLAMQRHYFLVLQHVAAHGLSPVLLGPTNRPHLETLLNTVVCGIRDVDDPMAKKTCI 579          
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Match: A0A7S2K9G5_9STRA (Exportin-T n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K9G5_9STRA)

HSP 1 Score: 167 bits (422), Expect = 9.810e-41
Identity = 140/489 (28.63%), Postives = 212/489 (43.35%), Query Frame = 1
Query:  280 DLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXXRPASPGAAEL-LRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPMDLSD-------------EAKLNLISRHAAFACVTTSPFPPSRFKEESRLIPSGSNTSKSLQAAREILLLLAHTVRRTHTCTLTSHLSPSRFFFLFFFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLAALLVLVQEGDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVGAEAQQLLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGMLRSVVDGLSGAEDASTKKTCLYIF 1704
            +LEAALRL+FH+ EG                        SP A  L L +G F Q++ ALH SDVA H H +VV+LY+ + VRY+K+L +    L+P +L A+ G QGL +    +R+RSCY L +LVK M   + P+V+  V G+Q LL +    P+   D             +A L+   +      V T   P  R  EE  +I SG+ +         +   +A     +   +      PS          +    SAL S P +  +R KTM  +  +I CL   ++  + +  L +L+   D KD+++V Q+LNQL I++   +A  +D ++MPF+R+ Y+L P A                                                              +E   L  H + E+   QKL F  +QH+ +  +  VL SPTN P L+ +LR + +G     + S KKTCL  F
Sbjct:    5 ELEAALRLVFHYCEGL-----------------------SPAATSLALEAGPFRQVIEALHQSDVAYHPHREVVILYYDIVVRYAKVLKENQ-ELLPGILSAMSGTQGLQHPHPRVRSRSCYLLLRLVKEMGPILRPFVETAVGGIQGLLTNHTSLPLQPDDSLYLFETTGLLIGKAGLDESEQQRYLMAVIT---PHIRSIEE--IISSGNLSHDPDHYGGILANFIAAVAYMSKPIS-----KPSPEVKKILLGIIPVLLSALQSLPTNEHVRGKTMIALQRMIICLNVDIIPRMSVF-LELLISHCDTKDILDVTQLLNQLCIKFKSAAAPSIDSSVMPFLRKCYELIPRA--------------------------------------------------------------SEDGDLAPHLITEQLSIQKLIFIFLQHIVTRNVTSVLLSPTNGPQLEEILRVMKEGAVSIMEPSMKKTCLTFF 396          
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Match: A0A7S2DJX0_9STRA (Exportin-T (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJX0_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.750e-38
Identity = 132/449 (29.40%), Postives = 208/449 (46.33%), Query Frame = 1
Query:   31 VGRLFRAMDHLPQLLATLYQRMKYPPDFAFDPSDEDEG----EEDMLRQQLRKHLVNAIRNAPETVLEFICRALSSLPTPLSGLPFPDLEAALRLIFHFGEGCGGVSVLNSSXXXXXXXXXXXRPASPGAAELLRSGAFPQMVLALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQGLSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALL---DSPQGNPMDLSDEAKL--------NLISRHAAFACVTTSPFPPSRFKEESRLIPSGS-----NTSKSLQAAREILLLLAHTVRRTHTCTLTSHLSPSRFFFLFFFQALEAATSALMSFPRHVALRAKTMFLVHGLIPCLGEGLLRALPLAALLVLVQE--------GDGKDLMEVAQVLNQLTIEYGPKSAQLLDGALMPFIRRTYQLTP 1293
            +G  F A+  +P+LL+ +YQ++ Y      +P  ++E     EE++ R ++R+  +  IR  PE  LEF+C  LS L  PLS L +P  EAALRL++HFGEG G                       P    L +SGAFP ++ A+H SD+  H H  V  LY +L+VRY K L +G P L+  VL+ +C    L++   TLR R C+ L  +VK +   V P+  V++ GV+ +L   DSP G+    SD   L        N  +R           F      +   LI         +T   +  +  + L    T+ ++ +   TSHLS      + +   L+ +  AL +   H  +R+K M ++H ++ CL   LL  L    + +LV              D+ ++  ++NQL I+Y  +   +L+  LM  + R     P
Sbjct:   99 IGHHFVALSEIPKLLSVIYQQLHYSESSNSEPDGDEEALEEAEEEVHRGRIRRLFLKCIRVVPELSLEFVCSMLSELQPPLSDLRWPRAEAALRLVYHFGEGLG-----------------------PKNQTLCQSGAFPTVLAAVHQSDIGMHPHWCVKTLYLELSVRYVKRL-EGQPELVRLVLDRMCS--SLTSPHHTLRARVCFLLKSMVKTLGADVTPFAVVVLNGVRQILFMVDSPLGD----SDRTHLFEIGALLINYATRVPEQQAAHLESFVRPLLNDVEALIGQAQLATHEDTRHFMGNSVALKLSYLATLSKSSSRD-TSHLS------VVYGTILQVSVKALTAMVTHPMVRSKFMVVLHRMVSCLDNALLLDLLPQPMELLVSHQPTVSSDMSTESDVEDLVAMVNQLMIKYHIRLGPVLEPLLMVLLSRLVDRMP 510          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10498.781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT8_ECTSI0.000e+085.11Exportin-T n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KW21_9PHAE6.930e-27282.23Exportin-T n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A836CAL0_9STRA9.140e-10538.75Exportin-T n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S4M7Y7_9STRA6.730e-5634.19Exportin-T (Fragment) n=1 Tax=Odontella aurita Tax... [more]
A0A448ZS68_9STRA3.320e-5328.60Exportin-T n=1 Tax=Pseudo-nitzschia multistriata T... [more]
B7G7L1_PHATC1.360e-5228.04Exportin-T n=1 Tax=Phaeodactylum tricornutum (stra... [more]
B8C3C8_THAPS4.290e-4928.52Exportin-T n=1 Tax=Thalassiosira pseudonana TaxID=... [more]
A0A7S2DK11_9STRA1.870e-4527.62Exportin-T n=1 Tax=Dictyocha speculum TaxID=35687 ... [more]
A0A7S2K9G5_9STRA9.810e-4128.63Exportin-T n=1 Tax=Leptocylindrus danicus TaxID=16... [more]
A0A7S2DJX0_9STRA1.750e-3829.40Exportin-T (Fragment) n=1 Tax=Dictyocha speculum T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10498contigEcto-sp8_S_contig10498:56..6732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score1035.4
Seed ortholog evalue1.3e-299
Seed eggNOG ortholog2880.D7FNT8
Model size2235
KEGG koko:K14288
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000049,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005049,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0008104,GO:0008150,GO:0008536,GO:0009653,GO:0009791,GO:0009888,GO:0009908,GO:0009933,GO:0010014,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016363,GO:0017016,GO:0019899,GO:0022414,GO:0031267,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034399,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048367,GO:0048507,GO:0048532,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0051020,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0061458,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071528,GO:0071702,GO:0071705,GO:0090567,GO:0097064,GO:0097159,GO:0140104,GO:0140142,GO:1901363
Exons8
EggNOG free text desc.tRNA re-export from nucleus
EggNOG OGsKOG2021@1,KOG2021@2759
Cds size2235
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10498.781.1prot_Ecto-sp8_S_contig10498.781.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10498 56..6732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143147.9282064-CDS-Ecto-sp8_S_contig10498:55..1241681143147.9282064-CDS-Ecto-sp8_S_contig10498:55..124Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10498 56..124 -
1681143147.9391282-CDS-Ecto-sp8_S_contig10498:410..13911681143147.9391282-CDS-Ecto-sp8_S_contig10498:410..1391Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10498 411..1391 -
1681143147.9480562-CDS-Ecto-sp8_S_contig10498:1813..22191681143147.9480562-CDS-Ecto-sp8_S_contig10498:1813..2219Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10498 1814..2219 -
1681143147.9565632-CDS-Ecto-sp8_S_contig10498:3177..32381681143147.9565632-CDS-Ecto-sp8_S_contig10498:3177..3238Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10498 3178..3238 -
1681143147.971217-CDS-Ecto-sp8_S_contig10498:3905..40531681143147.971217-CDS-Ecto-sp8_S_contig10498:3905..4053Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10498 3906..4053 -
1681143147.9866269-CDS-Ecto-sp8_S_contig10498:4369..44471681143147.9866269-CDS-Ecto-sp8_S_contig10498:4369..4447Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10498 4370..4447 -
1681143147.9944737-CDS-Ecto-sp8_S_contig10498:4914..53081681143147.9944737-CDS-Ecto-sp8_S_contig10498:4914..5308Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10498 4915..5308 -
1681143148.0026433-CDS-Ecto-sp8_S_contig10498:6634..67321681143148.0026433-CDS-Ecto-sp8_S_contig10498:6634..6732Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10498 6635..6732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10498.781.1

>prot_Ecto-sp8_S_contig10498.781.1 ID=prot_Ecto-sp8_S_contig10498.781.1|Name=mRNA_Ecto-sp8_S_contig10498.781.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=745bp
MNGGPGGGAEVGRLFRAMDHLPQLLATLYQRMKYPPDFAFDPSDEDEGEE
DMLRQQLRKHLVNAIRNAPETVLEFICRALSSLPTPLSGLPFPDLEAALR
LIFHFGEGCGGVSVLNSSGGGGGGGGGGRRPASPGAAELLRSGAFPQMVL
ALHDSDVARHKHPQVVMLYFQLTVRYSKMLADGPPHLIPKVLEAICGPQG
LSNADVTLRTRSCYFLTKLVKAMKEGVVPYVDVIVPGVQALLDSPQGNPM
DLSDEAKLNLISRHAAFACVTTSPFPPSRFKEESRLIPSGSNTSKSLQAA
REILLLLAHTVRRTHTCTLTSHLSPSRFFFLFFFQALEAATSALMSFPRH
VALRAKTMFLVHGLIPCLGEGLLRALPLAALLVLVQEGDGKDLMEVAQVL
NQLTIEYGPKSAQLLDGALMPFIRRTYQLTPGAGSTTAAAAAAAANGGGA
QQQAGGEGSDSGGGGWPNGTTAKLPAASAAADGAAATGGGAGAVGAEAQQ
LLAHEVAERAGFQKLCFSVIQHVSSNGLAGVLSSPTNAPHLDGMLRSVVD
GLSGAEDASTKKTCLYIFSLLLGGFNRGRSGGVPAAASAGGANAGEGGAS
ANGPAGGAVGGGGAKKGLRAAATQRRALSGKGGGLWTGSGPTVDMEPGVQ
SAVTAFVCERAVPAALKCLVDGAPPTGLDLRDAAAMSAIVNMGALLKEAR
EASGGSARFVGVAALACSCTPQVAEQLQLAVEGAADGPAIATALK
back to top

mRNA from alignment at Ecto-sp8_S_contig10498:56..6732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10498.781.1 ID=mRNA_Ecto-sp8_S_contig10498.781.1|Name=mRNA_Ecto-sp8_S_contig10498.781.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6677bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10498:56..6732- (Ectocarpus species8 EcLAC_412)
ATGAACGGGGGACCGGGGGGGGGGGCGGAGGTCGGCAGGCTTTTTCGGGC GATGGACCACCTGCCCCAGCTGCTGGCGACGCTGTATCAGAGGATGAAGT GAGTGATGTTGCACGCGATAGAGGCGGTTGGGCCGCGCCGGGGGGGGGGG GGGGGGGAGGCGTACTCTTATGTTTTGCATACTTTGTATTGGTTAGACCA TTGACCACGCGTCCTCGAGAGGACGGAGCATTGTTCCCACACGGCCGATC ACCGATGGCCAATCGTTTCTTTGGAGGCTCAAGAATGTCTTCCCTAGTCC ATCTGTCCGATCGATGTCACTTCCCGCCTTTTCAACCCACTTCCTGTGTC CCAGTACACCTACCGTCCTCTCCTGGTTATTCCGTGCCTCAAAACATTTC CCTGTATCTTCCTTCCATTTTTCCCAGCTCGGTCATGTACACTTCCCTCT CCTTCTTGTGTATCCGGCAATCCGCAACTACATGTCGTGGCACTCTGAGC CGCAATCACGTTTGAACTTGGCGTGCTCATCATCTGCCTTCCCATATCTT CGTCTACCTTCTCGAAGGCCAATGTCCCCGGTCCTGAATTTGACCTTCAG CTTTGTCCCTGCATTCATTGGTCAATGTAGGTACTCCTTGTGTCCTATGC CTTCTTTCAACATTCCGTACACATCTAGACCCTCCTTATCCTTGATTTCT TTGTGTTCTTCTCTCTCCGCAAAAGCAAAAAAACATCTTCTGCTTGAACC CCTCTAGACCTTCCGTTCCCAGCGTACCACCTTCGTCAATTTCGATTTCC TTTCATACGCCACCTACAACCTTGACCCACTCCGTGGTTTGTCTACCCCT CCTCTTGCTTACCCACTTCGCCTCCCAAGCTATTTTCGGTAAATTCTCCT CTCCCATACCCGGGGGGGGGGTTGAACGCACGATGGTAAGCAACTTTTTC GATTGTCATGATTAGCACTCGACGACCGAAGACACTGTAATGGCAGATGG ACGCGTTATGACTGTAAGGAAGCGGTATTTTCGCTCGAGAAGCAGGCAAC CCTTGGAAAGCGTTGGAAGCATCGGACCGACGTCCCTTTTCCACAGATAT AGTGGCCCGATTTCCTCGAGACGGTTTAACGATTTAGGCAGCAACGAATC GAATTTACCCACGTCACCCCCGTAGGGCTTAGTGCATGGACTGCAGGAAT GGCAACACACGACGATAACGATAACATCCCCCGCGATCAACCGGTGATTT CGGACGGAATGACCCTTATATCATTTCTCATCTCACGACGCACTTTTCCA GATCTTCTGGATTCGTCGGACCCCCCTCCCTCCGCGTTCCTCCCGTCATG AATTGGACGATATGCGTGACACACGTAAGCGATAGACCCCCCCCCGCCCA CGCCCCCCCCCCTGCCCCGCCCAGATACCCCCCAGACTTCGCGTTCGACC CAAGCGACGAGGACGAGGGGGAGGAAGACATGCTGAGGCAGCAGCTGCGC AAGCACCTCGTGAACGCCATCCGGAACGCGCCCGAGACCGTCCTCGAGTT CATCTGCCGGGCCCTGTCGTCCCTCCCCACCCCGCTGTCGGGCCTCCCCT TCCCGGACCTGGAGGCCGCGCTTCGCCTCATCTTTCACTTCGGCGAGGGC TGCGGCGGCGTCAGCGTCTTGAACTCTTCGGGCGGGGGGGGTGGGGGGGG GGGGGGAGGGCGGCGACCGGCTTCTCCCGGCGCGGCGGAGCTGCTGAGGT CCGGCGCGTTCCCGCAGATGGTGCTCGCGCTGCACGACAGCGACGTGGCG CGCCACAAACACCCCCAGGTTAGCAAAATAGTTGTGGAGATAACTCCGTT GCCTGGTAGATAGCCACGGGAGGCTGGGCTTGGCATCGGATTCGTCTGCT GCTGCGCTGGATGTGTCCACTGCGCCCTTGTTTTTGTCTTGGGAGGTTGG GGGACGCTATTGATTCCAGCCTTGTTGTTTTTGTTTTGTTGTCTACCTGC ACGGCGCCATCATAGTGGTATAACAGTCGTTCAGCGTGAAGAGTTTGGTG TGTTCGCCCCTCCTCTGGCTGGACTGGTGGGCTTTTCGTCGATTTTGCAC GGGCCACATACCGTCTGAACAACCGTCTTTTGTCGTCCCAGGTTGTCGAA ACGAGAGGACCCTTTTTGGTTGCTGCCATTTTCGGAAAACCTTCATCTCC GGGTGTTGCCTCCAACTGGCTCGTTCGCTGGCCCAACCAATCAACCAATG TTCTTGCACGACCGCAACACTGACCCGGCCCTCAGGTGGTGATGCTTTAC TTCCAGCTGACGGTGAGATACAGCAAGATGCTAGCGGACGGACCCCCGCA TCTCATCCCGAAGGTGAGGCACTGGCAGGTCTAGCCTTTCAAAACAAAAG CTGCGACGGACCCCCCCCTCTCCCCCGGAAGGGGACGCCCTGGCAGGTCT AGCCTTTCAAAACAAAAGCTGCCCCCCCCCTCCCCCCCCCCCCCACGCAG CCACACACTCTTTGCGTACAGAGAAATCGTTCGCCTTCTTGACACAGACA GGCAAGCAGGCAGGCAAGGAAGAACGTAGTGCACATCCCGCGCACGCGCG ATGCAATCCTTGTCAGGGTACCGTGCCACCCATGCTTGGCTCTGCTCGGC TTGTTTTTTGACTCGTGCACGCACTTCAGGTTCTGGAGGCTATCTGCGGA CCTCAGGGGCTCAGCAACGCGGACGTTACCCTGCGGACGCGGTCGTGCTA CTTCTTGACGAAGCTCGTAAAGGCGATGAAGGAGGGCGTCGTGCCCTACG TCGACGTCATCGTTCCGGGAGTCCAAGGTAAAAGGCGGGGGGGGAGGGGG AGGTGGTTTTTCGTGGTCACCGGGGGTGTCGGACTTTGCAATGTTGGGCA CGTGTTTTTTTGTGTTTTTTTGGCGTTTTTTGGCGTCAATCGCGACACAC CAGCCAGCACCTCTTCCGCTCTTCGCTGCCGCGGCCACCACGAGCCCGGG TGGTTAAGTGAAATCTTCGGGGCTTTAGGGTTAAGGTTGGTTGTTGTTGT ATTTTGGTGGATGGTGTCCTTTTTCTTTTCAAGGCCCGCTCTGTCCCGTC AGGGTCTCGATGGACGTGAGCGGAACAGCATTTCCACGCGACAGAGTTTG CCCTGTCGGATTTGATTTTTTGATGGAGCTCAAGTCCCCTTTCCGCAAGC CAAATCAGGTCTCTGCGCCGCCCCCGCCCCCGCCACCGCCTCGGCTGTTG ATGTCGCCCTCTACGCCTTTCGCGTCTGCGTTTATTGCCTACCTGCACGC AAGTAAGCTGTGCGATAATTGCGGGCGCCAGGTGTTTCAGCGGCGATCCC TTCCTGGGCGTCCTGTAGCTGCGAGGCGGTGTGCATTATGGCAACTTCGG GTTTATCGTCCTTTCTATTTTTCTGGTGCTGCGTTGTATGCTACGGCTCA CCCCGGCCCCCAAAACTCGGTTCGCCCCCCTTCGGACCCTGCAGCTCTCC TTGATTCTCCGCAAGGCAACCCCATGGACCTGTCGGACGAAGCCAAGCTC AATCTGTACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNGCTATGTTGGGAGAGACGGACGTGACGTGACA TTGCCGTGGATAAGCCCACGGCTGCGTAGTCGCCTGTTACCGTTTGCGTA CCACGTTGCGGTGCGGTGTGGACGTCTGTCTGCCTTTCCCGCTCTGGTGA GCACGCGTTGTCATGACCCTACGTGACCAGAAGCTTGCATGTGATCGCAC GTGTTGCGACCAAACAAGCACAAGCTGTTGATTGGCATCAACTCGAAAAT ATTGCAACCTCGCCAGGGTCAACCCCTTAGCTGGAAGGAGAAGAGAGCGT GTGCGTGCGTGCTGTCTCCGCATTTGATGCCTCGATATTGAAACTCAACA AGCAGCGGTTGAGGATCAGTCGGCATGCAGCGTTCGCCTGTGTTACAACA TCGCCTTTTCCGCCTTCGAGGTTCAAGGAGGAGAGCCGATTGATCCCCTC AGGTAGTAACACTTCAAAAAGTCTCCAAGCAGCAAGGGAAATCTTGTTGC TGTTGGCACACACAGTCAGGCGCACGCATACATGCACTCTCACCTCTCAC CTTTCACCCTCACGTTTTTTTTTTCTCTTTTTTTTCCAGGCGTTGGAGGC GGCGACGTCGGCCCTGATGTCTTTTCCTCGACATGTGGCTCTCCGGGCCA AGACGATGTTCCTCGTGCACGGACTCATCCCCTGTCTGGGCGAAGGCCTG CTGCGCGCCTTGCCGCTGGCGGCGTTGCTCGTGCTGGTGCAAGAGGGCGA CGGCAAGGATCTTATGGAGGTACGTACGTATGTGCGTGAACTATGAGTCC TTACCCGAAAGAGGAAGCGTTTGCGTTGTGTAAGGTTTGACTTTTTTTTT TTTTCTCCTCCTGCTGCCGCTGCTGTCGGGTGTTGTTGTTGTTGTTGTTA ATTTTCTCCTCCTGCTGTCGCTGTTGGCGGGCAGAGTTTCTCCCTGCTCT GCTGTTTGCAAGGGTCGGCGGCACGGCCTGGCGACCGATGCACCGCCGCC GAACGTTTTTGGTCGTGCTGCAGAAAAAATAAAAACCCGACGGCGTTGTT CAAAGTCCCGCGCCGGTGATTGGCAGATCCGTATTCGCGACACACATCTC GCCCCCGTCATGGTCGCCCCCGCCCCTCCCTATCTTTTGCCCCACTACTG CTGCAACCTGTGCACGCTTCCGCTTGCTGGGGCCACCGCAGGTTGCCCAG GTCCTGAACCAGCTCACCATCGAGTACGGCCCGAAGTCAGCCCAGCTCCT TGACGGCGCCCTCATGCCGTTCATTCGCCGAACGTACCAGCTCACCCCGG GCGCTGGTTCCACCACCGCGGCGGCCGCCGCCGCTGCCGCAAACGGCGGC GGCGCTCAGCAGCAAGCCGGCGGGGAGGGGTCAGACTCGGGGGGAGGCGG GTGGCCGAACGGGACGACGGCAAAGTTGCCAGCCGCCTCGGCAGCGGCAG ACGGGGCTGCTGCTACCGGCGGCGGGGCCGGGGCAGTGGGGGCGGAAGCG CAGCAGCTGCTGGCGCACGAGGTGGCCGAGCGAGCGGGGTTCCAGAAGCT GTGCTTCAGCGTGATCCAGCACGTCTCGTCGAACGGCCTCGCCGGCGTGC TCTCTTCCCCGACAAACGCGCCCCACCTGGACGGGATGCTTCGGTCGGTG GTCGACGGGCTCTCCGGCGCCGAGGACGCCTCGACAAAGAAGACCTGCCT CTACATATTCTCCCTCCTCTTGGGCGGCTTCAACCGCGGTCGAAGCGGGG GAGTTCCCGCCGCCGCCTCCGCCGGAGGCGCCAACGCCGGGGAGGGTGGT GCTTCCGCCAACGGCCCGGCCGGTGGTGCTGTGGGGGGCGGTGGGGCGAA GAAGGGCCTACGGGCGGCCGCCACGCAACGGCGAGCGCTGTCCGGGAAGG GCGGGGGGCTGTGGACGGGGTCGGGTCCGACGGTGGACATGGAGCCGGGA GTTCAGTCTGCCGTGACGGCGTTCGTCTGCGAGCGGGCCGTCCCCGCCGC CCTCAAGTGCCTGGTGGACGGCGCGCCGCCGACGGGGCTCGACCTGAGGG ACGCGGCCGCCATGAGCGCCATCGTGAACATGGGGGCCTTGCTGAAGGAG GCCAGGGAGGCCAGCGGCGGCTCGGCGAGGTTCGTCGGCGTCGCCGCGCT GGCGTGTAGCTGTACCCCGCAGGTATGGGGTGTGTAGCAAGAAGGAAGGG GTTTGTTTGGTGGAGCCTCTGCGGGGCTATGCAGGAGAAACCTGCCTGTC GCGGCCTCTTTGCACGATATTTCTGTACGCATTTTCTTTGTGCGTGTGTG TCCCGTACCGTGTCTTTTACCGCGGGGGGTTGTCCTTCGGTCTGCCAGAC GCGCTGATGCCCGCACACTCACCTCTATTGTCGTCGTTCTTCGCGTCGAG TCTCAGCGATGTCTCCTCGCTGCTTTTCTGTTGTTGCGTGTCGGGACGAA CACGGCAGGTGGCCGAGCAGTTGCAGCTTGCCGTGGAAGGGGCCGCAGAT GGACCCGCCATCGCGACCGCTCTCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10498:56..6732-

>mRNA_Ecto-sp8_S_contig10498.781.1 ID=mRNA_Ecto-sp8_S_contig10498.781.1|Name=mRNA_Ecto-sp8_S_contig10498.781.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2235bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10498:56..6732- (Ectocarpus species8 EcLAC_412)
ATGAACGGGGGACCGGGGGGGGGGGCGGAGGTCGGCAGGCTTTTTCGGGC
GATGGACCACCTGCCCCAGCTGCTGGCGACGCTGTATCAGAGGATGAAAT
ACCCCCCAGACTTCGCGTTCGACCCAAGCGACGAGGACGAGGGGGAGGAA
GACATGCTGAGGCAGCAGCTGCGCAAGCACCTCGTGAACGCCATCCGGAA
CGCGCCCGAGACCGTCCTCGAGTTCATCTGCCGGGCCCTGTCGTCCCTCC
CCACCCCGCTGTCGGGCCTCCCCTTCCCGGACCTGGAGGCCGCGCTTCGC
CTCATCTTTCACTTCGGCGAGGGCTGCGGCGGCGTCAGCGTCTTGAACTC
TTCGGGCGGGGGGGGTGGGGGGGGGGGGGGAGGGCGGCGACCGGCTTCTC
CCGGCGCGGCGGAGCTGCTGAGGTCCGGCGCGTTCCCGCAGATGGTGCTC
GCGCTGCACGACAGCGACGTGGCGCGCCACAAACACCCCCAGGTGGTGAT
GCTTTACTTCCAGCTGACGGTGAGATACAGCAAGATGCTAGCGGACGGAC
CCCCGCATCTCATCCCGAAGGTTCTGGAGGCTATCTGCGGACCTCAGGGG
CTCAGCAACGCGGACGTTACCCTGCGGACGCGGTCGTGCTACTTCTTGAC
GAAGCTCGTAAAGGCGATGAAGGAGGGCGTCGTGCCCTACGTCGACGTCA
TCGTTCCGGGAGTCCAAGCTCTCCTTGATTCTCCGCAAGGCAACCCCATG
GACCTGTCGGACGAAGCCAAGCTCAATCTGATCAGTCGGCATGCAGCGTT
CGCCTGTGTTACAACATCGCCTTTTCCGCCTTCGAGGTTCAAGGAGGAGA
GCCGATTGATCCCCTCAGGTAGTAACACTTCAAAAAGTCTCCAAGCAGCA
AGGGAAATCTTGTTGCTGTTGGCACACACAGTCAGGCGCACGCATACATG
CACTCTCACCTCTCACCTTTCACCCTCACGTTTTTTTTTTCTCTTTTTTT
TCCAGGCGTTGGAGGCGGCGACGTCGGCCCTGATGTCTTTTCCTCGACAT
GTGGCTCTCCGGGCCAAGACGATGTTCCTCGTGCACGGACTCATCCCCTG
TCTGGGCGAAGGCCTGCTGCGCGCCTTGCCGCTGGCGGCGTTGCTCGTGC
TGGTGCAAGAGGGCGACGGCAAGGATCTTATGGAGGTTGCCCAGGTCCTG
AACCAGCTCACCATCGAGTACGGCCCGAAGTCAGCCCAGCTCCTTGACGG
CGCCCTCATGCCGTTCATTCGCCGAACGTACCAGCTCACCCCGGGCGCTG
GTTCCACCACCGCGGCGGCCGCCGCCGCTGCCGCAAACGGCGGCGGCGCT
CAGCAGCAAGCCGGCGGGGAGGGGTCAGACTCGGGGGGAGGCGGGTGGCC
GAACGGGACGACGGCAAAGTTGCCAGCCGCCTCGGCAGCGGCAGACGGGG
CTGCTGCTACCGGCGGCGGGGCCGGGGCAGTGGGGGCGGAAGCGCAGCAG
CTGCTGGCGCACGAGGTGGCCGAGCGAGCGGGGTTCCAGAAGCTGTGCTT
CAGCGTGATCCAGCACGTCTCGTCGAACGGCCTCGCCGGCGTGCTCTCTT
CCCCGACAAACGCGCCCCACCTGGACGGGATGCTTCGGTCGGTGGTCGAC
GGGCTCTCCGGCGCCGAGGACGCCTCGACAAAGAAGACCTGCCTCTACAT
ATTCTCCCTCCTCTTGGGCGGCTTCAACCGCGGTCGAAGCGGGGGAGTTC
CCGCCGCCGCCTCCGCCGGAGGCGCCAACGCCGGGGAGGGTGGTGCTTCC
GCCAACGGCCCGGCCGGTGGTGCTGTGGGGGGCGGTGGGGCGAAGAAGGG
CCTACGGGCGGCCGCCACGCAACGGCGAGCGCTGTCCGGGAAGGGCGGGG
GGCTGTGGACGGGGTCGGGTCCGACGGTGGACATGGAGCCGGGAGTTCAG
TCTGCCGTGACGGCGTTCGTCTGCGAGCGGGCCGTCCCCGCCGCCCTCAA
GTGCCTGGTGGACGGCGCGCCGCCGACGGGGCTCGACCTGAGGGACGCGG
CCGCCATGAGCGCCATCGTGAACATGGGGGCCTTGCTGAAGGAGGCCAGG
GAGGCCAGCGGCGGCTCGGCGAGGTTCGTCGGCGTCGCCGCGCTGGCGTG
TAGCTGTACCCCGCAGGTGGCCGAGCAGTTGCAGCTTGCCGTGGAAGGGG
CCGCAGATGGACCCGCCATCGCGACCGCTCTCAAG
back to top