mRNA_Ecto-sp8_S_contig10494.777.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10494.777.1
Unique NamemRNA_Ecto-sp8_S_contig10494.777.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A6H5L876_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L876_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 1.710e-72
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 1
Query: 1048 RVWCSNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGMETTPNSS 1449
             V  SNSLVM+VPC+DAA+EP T+MLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSG ETTP+SS
Sbjct: 1091 HVRTSNSLVMLVPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGQETTPDSS 1224          
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: D7G7M7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M7_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 7.570e-44
Identity = 82/125 (65.60%), Postives = 85/125 (68.00%), Query Frame = 1
Query: 1075 MVVPCRDAAMEPRTSMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGMETTPNSS 1449
            MVVPC+DAAMEP T+MLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYN                                      MAVCLIDVDSRHTPVMQHGYMCRLSGMET+ NSS
Sbjct:    1 MVVPCQDAAMEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNA-------------------------------------MAVCLIDVDSRHTPVMQHGYMCRLSGMETSLNSS 88          
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A6U1MCU2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MCU2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.610e-23
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 1066 SLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKLG--YSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGME 1431
            S+V++   +D A EP T  LDW+ GSA  E KL   + MQ+ P+   C   ++EW Y G +C G F+  A+  +++F+  NGV++  TY  VD NTM+VC++++D RHTP +Q+G M RLS  +
Sbjct:    1 SVVVIEESQDVASEPGTRFLDWKLGSAFKEDKLHLEFCMQYIPDNNGCA--TLEWIYRGNICSGLFNPQASGATMTFKLANGVITT-TYHIVDENTMSVCIVEMDERHTPTIQYGTMSRLSRQD 121          
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A2D4C766_PYTIN (Uncharacterized protein n=3 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C766_PYTIN)

HSP 1 Score: 97.4 bits (241), Expect = 1.040e-19
Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKL--GYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRL 1419
            +N++V +    DAA +P T  L W FG +  +  L   Y++QF P++E    T +EW++ G  C G F   A+V   +F   + +V+  TYR +DANTMAVC++DVDS HTP +Q+G M R+
Sbjct:   57 TNNVVQIEEDPDAARQPNTQFLKWSFGRSHKKQDLVSAYTIQFIPDEEG---TFMEWSFEGVTCHGVFKPEASVAIFNFCLQDSMVT-ITYRILDANTMAVCIVDVDSEHTPTIQYGNMYRI 174          
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: M4C1U8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1U8_HYAAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.040e-19
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKLG--YSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRL 1419
            +N++V +    DAA +P T  L W FG    +  L   Y++QF P+++    T +EW++ G  C G F   A+V +L+F     +V+  TYR +DA+TMAVC++DVDS HTP +Q+G M R+
Sbjct:   45 TNNVVFIEEDLDAARQPNTQFLRWSFGRTHKKQDLASAYTVQFIPDEQ---STFMEWSFEGVTCHGIFKPEASVATLNFCLQESMVT-ITYRVLDADTMAVCIVDVDSEHTPTIQYGNMYRI 162          
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: D0P0D5_PHYIT (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=D0P0D5_PHYIT)

HSP 1 Score: 95.5 bits (236), Expect = 3.880e-19
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKLG--YSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLS 1422
            +N++V +    DAA +P T  L W FG    +  L   Y++QF P+++    T +EW++ G  C G F   A V  L+F     +V+  TYR +DANTMAVC++DVDS HTP +Q+G M R++
Sbjct:   48 TNNIVFIEEDLDAAGQPNTQFLRWSFGRTLKQQDLSSAYTVQFIPDEQG---TFMEWSFEGVTCHGVFKLEANVAILNFCLQESMVT-ITYRVLDANTMAVCIVDVDSEHTPTIQYGNMYRIN 166          
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A5D6YF76_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YF76_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.290e-19
Identity = 49/123 (39.84%), Postives = 74/123 (60.16%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKL--GYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLS 1422
            +N++V++    DAA +P T  L W FG       L   Y++QF P+++    T +EW++ G  C G F   A+V   +F     +V+  TYR +DANTMAVC++DVDS HTP +Q+G M R++
Sbjct:   48 TNNVVLIEEDVDAAHQPNTRFLKWSFGRTHKRQDLVSAYTIQFIPDEQG---TFMEWSFEGVTCHGVFKPEASVAIFNFCLQESMVT-ITYRILDANTMAVCIVDVDSEHTPTIQYGNMYRIN 166          
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A024UKI4_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UKI4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-18
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSA--PDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRL 1419
            +N++V++     AA +P T+ L W FG     +E  + Y++QF P+ +    T +EW++ G +C G F   A+V   +F     +V+  TYR +DANTMAVC++DVDS HTP +Q+G M R+
Sbjct:   40 TNNVVVIEEDTTAAKQPNTTFLKWSFGRGLRKNELTVAYTIQFIPDNKG---TFMEWSFEGAMCHGLFKPEASVAIFNFCLHESMVT-ITYRILDANTMAVCIVDVDSDHTPTIQYGNMYRI 157          
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A8K1CIW5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIW5_PYTOL)

HSP 1 Score: 94.0 bits (232), Expect = 1.680e-18
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKL--GYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRL 1419
            +N++V +    +AA +P T  L W FG +     L   Y++QF P+++    T +EW++ G  C G F   A+V   +F     +V+  TYR VDANTMAVC++DVDS HTP +Q+G M R+
Sbjct:   57 TNNVVFIEEDLEAARQPNTQFLRWCFGRSHKREDLVSAYTIQFIPDEQG---TFMEWSFEGVTCHGVFKPEASVAIFNFCLQESMVT-ITYRIVDANTMAVCIVDVDSEHTPTIQYGNMYRI 174          
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: K3WP12_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP12_GLOUD)

HSP 1 Score: 93.2 bits (230), Expect = 2.480e-18
Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAP--DETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGMETTPN 1443
            +N++V +    DAA +P T  L W FG     ++    Y++QF P+++    T +EW++ G  C G F   ++V   +F     +V+  TYR +DANTMAVC++DVDS HTP +Q+G M R+   +   N
Sbjct:   48 TNNVVFIEEDLDAAHQPNTQFLKWSFGRTHKIEDLVSAYTIQFIPDEQG---TFMEWSFEGVTCHGVFKPESSVAIFNFCLQESMVT-ITYRILDANTMAVCIVDVDSEHTPTIQYGNMYRIDPAKYEKN 173          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L876_9PHAE1.710e-7292.54Integrase catalytic domain-containing protein n=1 ... [more]
D7G7M7_ECTSI7.570e-4465.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U1MCU2_9STRA1.610e-2341.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4C766_PYTIN1.040e-1940.98Uncharacterized protein n=3 Tax=Pythium insidiosum... [more]
M4C1U8_HYAAE1.040e-1940.16Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
D0P0D5_PHYIT3.880e-1940.65Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A5D6YF76_9STRA5.290e-1939.84Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024UKI4_9STRA1.210e-1839.34Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A8K1CIW5_PYTOL1.680e-1840.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WP12_GLOUD2.480e-1836.92Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10494contigEcto-sp8_S_contig10494:1917..6745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score95.1
Seed ortholog evalue2.4e-17
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.4105
Model size1824
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.phosphopantetheine binding
EggNOG OGs2QURX@2759,3Q7Z7@4776,COG3882@1
Cds size378
COG Functional cat.Q
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10494.777.1prot_Ecto-sp8_S_contig10494.777.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10494 2289..5671 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143147.70442-UTR-Ecto-sp8_S_contig10494:1916..22881681143147.70442-UTR-Ecto-sp8_S_contig10494:1916..2288Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10494 1917..2288 -
1681143147.7519183-UTR-Ecto-sp8_S_contig10494:5671..67451681143147.7519183-UTR-Ecto-sp8_S_contig10494:5671..6745Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10494 5672..6745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143147.7152581-CDS-Ecto-sp8_S_contig10494:2288..23311681143147.7152581-CDS-Ecto-sp8_S_contig10494:2288..2331Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10494 2289..2331 -
1681143147.7222917-CDS-Ecto-sp8_S_contig10494:2969..30331681143147.7222917-CDS-Ecto-sp8_S_contig10494:2969..3033Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10494 2970..3033 -
1681143147.729909-CDS-Ecto-sp8_S_contig10494:3762..38731681143147.729909-CDS-Ecto-sp8_S_contig10494:3762..3873Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10494 3763..3873 -
1681143147.7374794-CDS-Ecto-sp8_S_contig10494:4621..47371681143147.7374794-CDS-Ecto-sp8_S_contig10494:4621..4737Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10494 4622..4737 -
1681143147.7447052-CDS-Ecto-sp8_S_contig10494:5627..56711681143147.7447052-CDS-Ecto-sp8_S_contig10494:5627..5671Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10494 5628..5671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10494.777.1

>prot_Ecto-sp8_S_contig10494.777.1 ID=prot_Ecto-sp8_S_contig10494.777.1|Name=mRNA_Ecto-sp8_S_contig10494.777.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=126bp
MVVPCRDAAMEPRTSMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEW
NYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVD
SRHTPVMQHGYMCRLSGMETTPNSS*
back to top

mRNA from alignment at Ecto-sp8_S_contig10494:1917..6745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10494.777.1 ID=mRNA_Ecto-sp8_S_contig10494.777.1|Name=mRNA_Ecto-sp8_S_contig10494.777.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4829bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10494:1917..6745- (Ectocarpus species8 EcLAC_412)
CGTGATTCCATATTTCTACATGGAGGGTCCGTTGACCATGCTCTATTTGC GCAACCAACGCGTGTTGTTCCGCACAGGATTCATATCGCTTGGTGTTATT ATTGTTATGTGGGTGTTCTCAGCAACGCGGTGGGCGTCCCCTTTGAAGTC GCAGCAGATATCCACTGCTTCAAAAGCCAACCTAGAGAACGACGACGGCT TCGTACGATTTCCCTTTGATCTAGGCGGAAATTGTGAACCTTTTGTTTCT GATTGGGTGCCCCACAGACTTGGCAAAGTTAGAAGCCGGAAACTCACGCG TTTTACGATTTTGGTGGATCAGTGGCCGAATGCGTGTATGTGTGTGTTGT TAGCTGAAGGATAGGGTCGGTGCATGGTCTGATTTTCAGCAAGATGCAAC CATTGGCCAAACACTGCGTTGTCGGCAACATCGATCTTCTTTTCGTGACA CCCCAATTTCATCATGTGCATTTACCCGCCGGACTCCCCCCATGATTGCA GGCTTCGAACCAGTTTCCCATTCCCGCATGCAAACGCTTCCCGGTACGTT TTTCAGTTGGTTGGGGTGTTTTCTGTGTATAACAACCGCTCCTACGGGCT GACCCTTGACAGCGCCATTGGCAGCACCATTGGCAACACCATTGGCAGCA CTCAAGTACCAGCGAGGAAACAAGCAGCACATTTTGCTGTTCGGAGTGAA ATGGTGGGGAAACGCCTTTGGAGTGCAATTCACAGCACCAACCGTATGGT TCGTTCCGTATCCGCACAAGAGGTGCACTAGGCGGCAAGCTCGCACGGAG GTGCGTAGAAGAAGGGGGAAAGGCGGCGATGTTCGATGCGCGCTGCCGCG CACCATGCCTCGCGCTCGGACGGAGAATTGGCGTTGACATGAGTAAAAAA GCCGAGAACGAAATGTTTTTTTGACGACCGACTCTCCTCGTGCGAAGAGT CGTCTCAGTCAGTCACGATATACGCTTGTTTCGCATGTTGCCATCTCCTT TTGGCGTGTGCGTGGTGTGATGCGACTCTCTGTGTTCGACTCGGCCGCGC GTCTGGTGCAGCAATTCGCTGGTGATGGTGGTGCCCTGTCGGGATGCTGC CATGGAGCCGAGAACTTCGTGAGTGTGGTTTGGAGAAAGCTCTTCCTTCA GGTTTCTTTCCTTTCTTCTCTCGTGTTCAAGAGTCCTTATCGATGTGTTG TACTCGTCCACCTCCGCTCCGCCGTCTGTGCCCATCGTGTGTAGGTGCCA CGAGGTACCATACCCAGCTAACTCTGCAAAACAACCATGCAGGCCTGCGG CTCACGATAATATCAAGCGAAAGGGCGAAAACGTTCTCCACCTACCACCC TACAGAATTCCACATCGAGTGCCACTTGTTTTTACGCACACACGTCATCA TGGTATCTCGTGTCACCTACGGCGGCCGCCTGCCGTTTGTGGCGTTTCGT GTCTACTTCTTTAAGCACTGAGCTGAATGTAGCTCCGGTCTCGTTAGGCA CAATTTCGTTCCTCTCTTGTTTTGGTTACAATCATCGCGCCATTGTCGCT ACTCACAGATTTGTGCCTAACCCGCAGTCTTTGTTCCTTCTCCACTGAGC TATTACGCTGCGGTACATGTCCTTTGTCCTTCACGACGTCACGGCAACTC GCCACGTGCCAATCGTACTGCATTTGGTGAACACCCGAAGACACCACGAA ACGAATTGGGTCACAGGAGCAATGGGATTTCCGGGCCGGGGAAACACGGA GTGTTTGTTGTCGCTCCCTCCCTCTCCGATGCGGGAAACGAACGTTCGGT TTTATGTTTCTCAAAAGGACACCACGAAGGAGAGCTGCGGGCAAGAGCTT TTTCTTTTACGTTGATGATTTTCCCTTGTTTTTTCCCGTGCTGCCTGTGT TTGCCTTCCTGGGGGAAATTTTTGCCGCTGCGTGCTATTTCTTTTTTGTT TTATGTTCTGTGCACACGTGTTTTCATGTTTGCTCTCGTGCGCTTGTACT ATGTTTAGGATGTTGGACTGGCGCTTCGGTAGCGCCCCGGACGAAACCAA GCTTGGCTACAGCATGCAGTTCTTCCCGGAACAGGAGGATTGCGGAGAGA CCAGCGTGGAGTGGAATTACAACGGTGAGAGCTATTGAAAGTGTAAATAT GACACATGGTTTGATACTGCTTCAGGACGGTGGTGAGTTTGAGTGTTGTG GGCTGTGTCATGAGACAAGATACGTGCCAGAAAACGCACAAACATCAACC GTGGGAGAGAGCGAGAAGAGGCAGGCGTTTACCAGTCCGCCTTTGGCCCA AACAGTTCAACAAAGAATAAAACAAGAAAACAGGCCCCAAACAGCTATGG CGGCCTGACCAGCGTAAACGCTTTTGTGTTTTCTCTGATTTTACATCAAT CGGACTAACCGGGTGGCCAATGAAAGACACCAGTGCGGATTGAAAAAAGC TAGAATGCTTGTAGTCCGCGGTCTCAAAAGACAGGTATGTCCGTTGTGTG TTGGGGTACGAATTTGGCGTCGAATCCTGATCGTTTTGGTCGTCCATCAA CTGTATCGGCGACACCAAAACGCATCACAAGCATGACCGTGCCTGTGGGT TTGGTGAGCCTCGTGAAGGCACCCCGCAGTTCAATGTCGTTCCTAAGACA CAAAGCACTGACCATCTGACTGACGAAGATACACCGAACTTTTGACTTGT GCGGCCGTATGACCAGCCGTCCCGCAGACCTCGCATGCATTGTGGCAGTA CTTTTCTTTTTTCCATTTAGGAAGCTCCCGATCACCATCCTCGTCGCCAC AACGAGAATTATCTCAAAGATTGCCACTCACCTACCATTTCTCCCAACCG TTACCTTTTGGGCCCTATCTAGGCCGAGTGTGTCGGGGAGACTTCAGCCA TGCAGCCGCGGTGTTGTCGCTATCGTTCCGGGACGACAATGGTGTTGTCA GCAACGCCACCTACCGGGCCGTGGATGCTAACAGTTGAGTTCGATACTCG GAACGAGCAACCCCTCAGTGTCAATATCACCTCGGCGATATGGTATGCAT GCTTTTGGCAGTATTTGGGTGGCGCTTCCTGCGGGTCGTCTCGTTGGCAC CCATTTAGGCTGGTGCTTGCTTTTTGGCCGGGTTTTGGTGGAATAGTCTG GACGTGATGGCCGTGATCGGCGGCCGCCGAACCGTTTATGGCGCTTGAGT TTGGTGTACAACATTTTCATCGAGTTGTACATAACTTAGTGTACATGCCC GGCGTTCAAGTATAGTCCGACAGCAATCTGTTGGCATGCATCGCGTGTTG CTACCGGTGTTACTGCCGTTAGTGGTGGTGGTGATTGTAGCGACGGCGTT GTCCGTGAATTCTTGCCGTATTGTATTGCGGTTCTTTGCACCTGTTGTTT TGTTTCCTGTCTGTTGGATTTGGGGTGGGGGGGGCTGTTGCTTGGTGATG CTCGCTTCGGTGACCACGCCCTCCTTCCGTCCCCCCGTTGACGTTATCGT CAGATCGTTCACATGCCACACCCCACCCTTTCCCCGATGCTCTTTTTTCT TCCTGCGTTGCCGTCGGTGCCGTGGATACATCCAAATCCACCTTCGCCGC CACGCGTCGGCGACCGCGAACCGCGCCTCCGCACCCGCCACCATAATAAA ATAACTCGGACAACCGAACGACTACTCTGTTTCTCTGACGAAACCGGCAC GATAACCGACAGCCATGGCGGTGTGTCTTATTGATGTGGACAGCCGACAT ACCCCAGTCATGCAACACGGCTACATGTGAGTTCATCTACTTGATGGGCG GATCAGCATGGGAGCAGCGGTGTTCCAAATGTGTCGGGAGTGACGCCCGA TACAACCGGTGTACGCCAAACGTTAACCACCCCCGTTGATTTATCCTTGT TCACCATAAACAAATCCATGAACGCTTGTAACCTCGAATGCAACAAACAC GAATGCTTTGTATCGAATGACAATCGATGATGGGGTGGTGCCAGTAACTC CTTGACATGTTTCTGCGTCCTACCGTCGCCTTCCTACCTGCCCGCATTCG CTCGGCTTTTTGTCCCGACCTGTCGCTGGAAGATGTCTGGATCCCCGTTC ACCCCGTTGGAAGCTTGTCCAAACCGCACCAATCGCCGTCCTTCCTTCCA TACCTTTTTATATCGATTCTATATCTTCTACGATGTTTTACCGTAGACGA CCACGCTCGCCGGATGACCGATGGATTATTTTCAGCTTTCATAGGTTTCC CTGTCCTCTGGGTACTAATATGACAGAGTTAAGCAAGGAGGCAACCGGAC GGGAGTGTCGAGCCTCCGGTTAGAGCCCGCGGACCTAACAAGACTACGAA GATTCCCTCTTGACTACCGCTGCTCGCTGGTTTCCGTACCGCTGCAACAT CGCCTCCTTCTCAGGTGCAGACTGTCCGGGATGGAGACTACCCCCAACTC CTCGTGAACGGGGTAATATTGGGGGCGCGTGTGGGTGCCGCGATAGCGCA CGTGTTAGTCTGCCCTATTTCGTCCATGTAGTTTCCGAAATCCTTCAATG CGTGTGCACGGACTTGCTGATGTATCACCGTAGATGTTGCGTGACTAATT GGTGGTATTGTGTATAGTATTTCTGGGGCCCCATCTCCCCCAAGTTTGTT TGTGCTGTGTAGACTGGTTTTTGACAGTTTCCATGGAAAGAAGGGCAGAA AGGAAAAGGTCGGAGGCAGCAAGTGCAATGACGTGGGGGGAGAAAGATGG TCGTACGGTGTGTGTATTGTATCTATTGTAGGTTGCGGTGTGTGCGAAGT ACGGAGCAAGGGCCGGCAGCGAAACACAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10494:1917..6745-

>mRNA_Ecto-sp8_S_contig10494.777.1 ID=mRNA_Ecto-sp8_S_contig10494.777.1|Name=mRNA_Ecto-sp8_S_contig10494.777.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10494:1917..6745- (Ectocarpus species8 EcLAC_412)
ATGGTGGTGCCCTGTCGGGATGCTGCCATGGAGCCGAGAACTTCGATGTT
GGACTGGCGCTTCGGTAGCGCCCCGGACGAAACCAAGCTTGGCTACAGCA
TGCAGTTCTTCCCGGAACAGGAGGATTGCGGAGAGACCAGCGTGGAGTGG
AATTACAACGGCCGAGTGTGTCGGGGAGACTTCAGCCATGCAGCCGCGGT
GTTGTCGCTATCGTTCCGGGACGACAATGGTGTTGTCAGCAACGCCACCT
ACCGGGCCGTGGATGCTAACACCATGGCGGTGTGTCTTATTGATGTGGAC
AGCCGACATACCCCAGTCATGCAACACGGCTACATGTGCAGACTGTCCGG
GATGGAGACTACCCCCAACTCCTCGTGA
back to top