mRNA_Ecto-sp8_S_contig10494.777.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A6H5L876_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L876_9PHAE) HSP 1 Score: 263 bits (672), Expect = 1.710e-72 Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 1
Query: 1048 RVWCSNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGMETTPNSS 1449
V SNSLVM+VPC+DAA+EP T+MLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSG ETTP+SS
Sbjct: 1091 HVRTSNSLVMLVPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGQETTPDSS 1224
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: D7G7M7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M7_ECTSI) HSP 1 Score: 160 bits (406), Expect = 7.570e-44 Identity = 82/125 (65.60%), Postives = 85/125 (68.00%), Query Frame = 1
Query: 1075 MVVPCRDAAMEPRTSMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGMETTPNSS 1449
MVVPC+DAAMEP T+MLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYN MAVCLIDVDSRHTPVMQHGYMCRLSGMET+ NSS
Sbjct: 1 MVVPCQDAAMEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNA-------------------------------------MAVCLIDVDSRHTPVMQHGYMCRLSGMETSLNSS 88
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A6U1MCU2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MCU2_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.610e-23 Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 1066 SLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKLG--YSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGME 1431
S+V++ +D A EP T LDW+ GSA E KL + MQ+ P+ C ++EW Y G +C G F+ A+ +++F+ NGV++ TY VD NTM+VC++++D RHTP +Q+G M RLS +
Sbjct: 1 SVVVIEESQDVASEPGTRFLDWKLGSAFKEDKLHLEFCMQYIPDNNGCA--TLEWIYRGNICSGLFNPQASGATMTFKLANGVITT-TYHIVDENTMSVCIVEMDERHTPTIQYGTMSRLSRQD 121
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A2D4C766_PYTIN (Uncharacterized protein n=3 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C766_PYTIN) HSP 1 Score: 97.4 bits (241), Expect = 1.040e-19 Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKL--GYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRL 1419
+N++V + DAA +P T L W FG + + L Y++QF P++E T +EW++ G C G F A+V +F + +V+ TYR +DANTMAVC++DVDS HTP +Q+G M R+
Sbjct: 57 TNNVVQIEEDPDAARQPNTQFLKWSFGRSHKKQDLVSAYTIQFIPDEEG---TFMEWSFEGVTCHGVFKPEASVAIFNFCLQDSMVT-ITYRILDANTMAVCIVDVDSEHTPTIQYGNMYRI 174
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: M4C1U8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1U8_HYAAE) HSP 1 Score: 97.1 bits (240), Expect = 1.040e-19 Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKLG--YSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRL 1419
+N++V + DAA +P T L W FG + L Y++QF P+++ T +EW++ G C G F A+V +L+F +V+ TYR +DA+TMAVC++DVDS HTP +Q+G M R+
Sbjct: 45 TNNVVFIEEDLDAARQPNTQFLRWSFGRTHKKQDLASAYTVQFIPDEQ---STFMEWSFEGVTCHGIFKPEASVATLNFCLQESMVT-ITYRVLDADTMAVCIVDVDSEHTPTIQYGNMYRI 162
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: D0P0D5_PHYIT (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=D0P0D5_PHYIT) HSP 1 Score: 95.5 bits (236), Expect = 3.880e-19 Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKLG--YSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLS 1422
+N++V + DAA +P T L W FG + L Y++QF P+++ T +EW++ G C G F A V L+F +V+ TYR +DANTMAVC++DVDS HTP +Q+G M R++
Sbjct: 48 TNNIVFIEEDLDAAGQPNTQFLRWSFGRTLKQQDLSSAYTVQFIPDEQG---TFMEWSFEGVTCHGVFKLEANVAILNFCLQESMVT-ITYRVLDANTMAVCIVDVDSEHTPTIQYGNMYRIN 166
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A5D6YF76_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YF76_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 5.290e-19 Identity = 49/123 (39.84%), Postives = 74/123 (60.16%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKL--GYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLS 1422
+N++V++ DAA +P T L W FG L Y++QF P+++ T +EW++ G C G F A+V +F +V+ TYR +DANTMAVC++DVDS HTP +Q+G M R++
Sbjct: 48 TNNVVLIEEDVDAAHQPNTRFLKWSFGRTHKRQDLVSAYTIQFIPDEQG---TFMEWSFEGVTCHGVFKPEASVAIFNFCLQESMVT-ITYRILDANTMAVCIVDVDSEHTPTIQYGNMYRIN 166
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A024UKI4_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UKI4_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.210e-18 Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSA--PDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRL 1419
+N++V++ AA +P T+ L W FG +E + Y++QF P+ + T +EW++ G +C G F A+V +F +V+ TYR +DANTMAVC++DVDS HTP +Q+G M R+
Sbjct: 40 TNNVVVIEEDTTAAKQPNTTFLKWSFGRGLRKNELTVAYTIQFIPDNKG---TFMEWSFEGAMCHGLFKPEASVAIFNFCLHESMVT-ITYRILDANTMAVCIVDVDSDHTPTIQYGNMYRI 157
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: A0A8K1CIW5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIW5_PYTOL) HSP 1 Score: 94.0 bits (232), Expect = 1.680e-18 Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAPDETKL--GYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRL 1419
+N++V + +AA +P T L W FG + L Y++QF P+++ T +EW++ G C G F A+V +F +V+ TYR VDANTMAVC++DVDS HTP +Q+G M R+
Sbjct: 57 TNNVVFIEEDLEAARQPNTQFLRWCFGRSHKREDLVSAYTIQFIPDEQG---TFMEWSFEGVTCHGVFKPEASVAIFNFCLQESMVT-ITYRIVDANTMAVCIVDVDSEHTPTIQYGNMYRI 174
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Match: K3WP12_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP12_GLOUD) HSP 1 Score: 93.2 bits (230), Expect = 2.480e-18 Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 1
Query: 1060 SNSLVMVVPCRDAAMEPRTSMLDWRFGSAP--DETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDANTMAVCLIDVDSRHTPVMQHGYMCRLSGMETTPN 1443
+N++V + DAA +P T L W FG ++ Y++QF P+++ T +EW++ G C G F ++V +F +V+ TYR +DANTMAVC++DVDS HTP +Q+G M R+ + N
Sbjct: 48 TNNVVFIEEDLDAAHQPNTQFLKWSFGRTHKIEDLVSAYTIQFIPDEQG---TFMEWSFEGVTCHGVFKPESSVAIFNFCLQESMVT-ITYRILDANTMAVCIVDVDSEHTPTIQYGNMYRIDPAKYEKN 173 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10494.777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10494.777.1 >prot_Ecto-sp8_S_contig10494.777.1 ID=prot_Ecto-sp8_S_contig10494.777.1|Name=mRNA_Ecto-sp8_S_contig10494.777.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=126bp MVVPCRDAAMEPRTSMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWback to top mRNA from alignment at Ecto-sp8_S_contig10494:1917..6745- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10494.777.1 ID=mRNA_Ecto-sp8_S_contig10494.777.1|Name=mRNA_Ecto-sp8_S_contig10494.777.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4829bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10494:1917..6745- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10494:1917..6745- >mRNA_Ecto-sp8_S_contig10494.777.1 ID=mRNA_Ecto-sp8_S_contig10494.777.1|Name=mRNA_Ecto-sp8_S_contig10494.777.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10494:1917..6745- (Ectocarpus species8 EcLAC_412)back to top |