mRNA_Ecto-sp8_S_contig10491.774.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10491.774.1
Unique NamemRNA_Ecto-sp8_S_contig10491.774.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Match: D7FT56_ECTSI (tRNA-uridine aminocarboxypropyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT56_ECTSI)

HSP 1 Score: 712 bits (1838), Expect = 3.470e-253
Identity = 429/454 (94.49%), Postives = 432/454 (95.15%), Query Frame = 1
Query:   70 MILVRLMLALAAQVVAVAGQKSGASERLRARSSSASALRVLLPPPGSADRNSDALFCCPTTLTPFLAVGRRKPRRAACAAREIGNDAPSQAVQSYYERRREAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRHDYSEQDLRKALGVEVAIDSSPERVSEISSERENSASTGTPLLLFPCPGADYLEDIAASRDQPAPSAQPFPPTPAXXXXXXXXXXXXXXXXXXXXXVVV--LVDGTWSQAKQILSRYPSLLRSRMAATPAGQKTRELGASVGGVPVAAXXXXXXXXXXXXXXXXXXXXXXXSGGREAGPMEDGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRADTGGRRPRFVNRKERTTNRRSTPKKGIL 1425
            MILVRLMLA AAQ VAVAGQKSGASERLRARSSSASALR+LLPPPGSA RNSDALFCCPTTLTPFL V RRKPRRAACAAREIGNDAPSQAVQSYYERRREAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMR+DYSEQDLRKALGVEVAI  SPERVSEISSERENSASTG PLLLFPCPGA+YLEDIAASRDQPAPSAQPFP    XXXXXXXXXXXXXXXXXXXXX     LVDGTWSQAKQILSRYPSLLR   A TPAGQKTRELGASVGGVPVAAXXXXXXXXXXXXXXXXXXXXXXXSGGREAGPMEDGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRAD GGRRPRFVNRKERTTNRRSTPKKGIL
Sbjct:    1 MILVRLMLAFAAQAVAVAGQKSGASERLRARSSSASALRLLLPPPGSAGRNSDALFCCPTTLTPFLTVRRRKPRRAACAAREIGNDAPSQAVQSYYERRREAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRYDYSEQDLRKALGVEVAIYRSPERVSEISSERENSASTGIPLLLFPCPGAEYLEDIAASRDQPAPSAQPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDGTWSQAKQILSRYPSLLRPTTATTPAGQKTRELGASVGGVPVAAXXXXXXXXXXXXXXXXXXXXXXXSGGREAGPMEDGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRADAGGRRPRFVNRKERTTNRRSTPKKGIL 454          
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Match: L1J958_GUITC (tRNA-uridine aminocarboxypropyltransferase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J958_GUITC)

HSP 1 Score: 92.4 bits (228), Expect = 1.820e-16
Identity = 94/330 (28.48%), Postives = 136/330 (41.21%), Query Frame = 1
Query:  403 GRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRHDYSEQ--DLRKALGVEVAIDSSPERVSEISSERENSA---STGTPLLLFPCPGADYLEDIAASRD-QPAPSAQPFP-------PTPAXXXXXXXXXXXXXXXXXXXXXVVVLVDGTWSQAKQILSRYPSLLRSRMAATPAGQKTRELGASVGGVPVAAXXXXXXXXXXXXXXXXXXXXXXXSGGREAGPMEDGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRADTGG 1353
            GR +C+RC R   +C+CSSLPAE +   T+ +++QHP E  K++ GTVPL+   L N   VV R + +++    R   G +V  D       + SS +++S+             CP  +    I  + D  PA  A           P P                       +++VDGTW QA +++ R   + R+                                                        +E G + R V+F  AG SGY FR+EP + CLSTLESVAY+L+ LE T +G  A  +L   F  MVS+Q S    GG
Sbjct:    2 GRAVCQRCGRPETVCVCSSLPAEKIMLKTKILVVQHPCECHKKIIGTVPLMELVLDNMQVVVARGNGAKEASTTRGRRGRKVGSDEGSPLSYDSSSSQDDSSLLQKVNDASDTAACPIQNKKGIIHGTLDGNPALEAALSDKKTLLLYPGPGAVDIETLQLDDSDSER-----TLIVVDGTWRQAGRVI-REECIRRA--------------------------------------------------------VERGDVTR-VQFARAGRSGYKFRKEPHQFCLSTLESVAYSLQYLEKTSEGERAVCHLMDTFSQMVSLQTSYIAKGG 268          
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Match: A0A836CLP8_9STRA (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLP8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.280e-14
Identity = 47/79 (59.49%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 1141 LCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRADTGGRRPRFVNR 1377
            LC  V+FR  G S Y  RREP   CLSTLES+AY+LEVLE T Q  AAA  LRKAF AMV  Q+  AD  G   RFV R
Sbjct:   34 LCTPVQFRDGGSSTYTIRREPMPHCLSTLESIAYSLEVLEATDQARAAAVSLRKAFAAMVRHQVRSADEVGN-VRFVKR 111          
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Match: R1BXS1_EMIHU (tRNA-uridine aminocarboxypropyltransferase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BXS1_EMIHU)

HSP 1 Score: 85.9 bits (211), Expect = 7.850e-14
Identity = 94/331 (28.40%), Postives = 127/331 (38.37%), Query Frame = 1
Query:  406 RDLCERCRR-AREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRHDYSEQDLRKALGVEVAIDSSPERVSEISSERENSASTGTPLLLFPCPGADYLEDIAASRDQPAPSAQPFPPTPAXXXXXXXXXXXXXXXXXXXXXVVVLVDGTWSQAKQILSRYPSLLRSRMAATPAGQKTRELGASVGGVPVAAXXXXXXXXXXXXXXXXXXXXXXXSGGREAGPMEDGALCRAVKF-RCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLSRADTGGRRPRFVNRKERTT 1392
            R +C RCRR AR+ C+C+ LP   +   TR +ILQHP E++K +   VPL+  CL     V     +       A G+E    S  E                 PLLLFP  GA  L D AA   QP  S++    T                       ++VL+DGTWSQA+ ++   PSL                                                               A C  V F R A       RREP + C+STLE+ A  L ++E T     AAA + +  +A+V  QL+ A+   RRPR+  R E+ T
Sbjct:   28 RSVCRRCRRPARQHCVCAELPPAPIAVQTRVLILQHPRESRKAMCS-VPLIPLCLREAEVVQAPMPFEAGSCFTAEGLEPLQRSIREGYE--------------PLLLFPGEGAVPL-DAAAGWPQPRASSKQSSAT--------------RRSRERRRKLLVLIDGTWSQARAMMRHSPSLA--------------------------------------------------------------AACTLVMFERPAQPIIAAVRREPERHCVSTLEACARALRLVEPTSAAEEAAAAMERGLRALVGRQLAAAEAD-RRPRYWRRAEQPT 265          
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Match: A0A6P7V939_IXOSC (tRNA-uridine aminocarboxypropyltransferase n=3 Tax=Ixodes TaxID=6944 RepID=A0A6P7V939_IXOSC)

HSP 1 Score: 81.6 bits (200), Expect = 1.560e-13
Identity = 75/289 (25.95%), Postives = 104/289 (35.99%), Query Frame = 1
Query:  406 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRHDYSEQDLRKALGVEVAIDSSPERVSEISSERENSASTGTPLLLFPCPGADYLEDIAASRDQPAPSAQPFPPTPAXXXXXXXXXXXXXXXXXXXXXVVVLVDGTWSQAKQILSRYPSLLRSRMAATPAGQKTRELGASVGGVPVAAXXXXXXXXXXXXXXXXXXXXXXXSGGREAGPMEDGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQ 1272
            R LC +CRR   +C CSSLP   +P S++  ILQHP E K+ +  T P++   L +   VV+R     ++   AL   +  D  P              S G  L+L+P P A+ LED+   R++                                   +VL+DGTWSQA+ +    P L R R                                                                V+      S Y  R +P +ECLST+E+VAY L VLE  PQ
Sbjct:   24 RALCNKCRRPPAVCWCSSLPETPVPVSSKVFILQHPGEVKRNLR-TAPMLEAALDSEHCVVLRGRRFSRERHGALNAMLDGDEGP--------------SLGDTLVLYPGPNAEPLEDLPTVRER------------------------------GRGYNLVLLDGTWSQARSLFHNSPHLHRLRQ---------------------------------------------------------------VQINPNRTSSYVIRTQPTRECLSTVETVAYALSVLEENPQ 204          
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Match: A0A7S3RJQ7_EMIHU (tRNA-uridine aminocarboxypropyltransferase (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RJQ7_EMIHU)

HSP 1 Score: 77.0 bits (188), Expect = 6.300e-12
Identity = 86/312 (27.56%), Postives = 116/312 (37.18%), Query Frame = 1
Query:  406 RDLCERCRR-AREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRHDYSEQDLRKALGVEVAIDSSPERVSEISSERENSASTGTPLLLFPCPGADYLEDIAASRDQPAPSAQPFPPTPAXXXXXXXXXXXXXXXXXXXXXVVVLVDGTWSQAKQILSRYPSLLRSRMAATPAGQKTRELGASVGGVPVAAXXXXXXXXXXXXXXXXXXXXXXXSGGREAGPMEDGALCRAVKF-RCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAAAAYLRKAFKAMVSMQLS 1335
            R +C RCRR AR+ C+C+ LP   +   TR +ILQHP E++K +   VPL+  CL     V     +       A G+E    S  E                 PLLLFP  GA  L D AA   QP  S++    T                       ++VL+DGTWSQA+ ++   PSL                                                               A C  V F R A       RREP + C+STLE+ A  L ++E T     AAA + +  +A+V  QL+
Sbjct:   50 RSVCRRCRRPARQHCVCAELPPAPIAVQTRVLILQHPRESRKAMCS-VPLIPLCLREAEVVQAPMPFEAGSCFTAEGLEPLQRSIREGYE--------------PLLLFPGEGAVPL-DAAAGWPQPRASSKQSSAT--------------RRSRERRRKLLVLIDGTWSQARAMMRHSPSLA--------------------------------------------------------------AACTLVMFERPAQPIIAAVRREPERHCVSTLEACARALRLVEPTSAAEEAAAAMERGLRALVGRQLA 269          
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Match: A0A6P7VBB6_IXOSC (tRNA-uridine aminocarboxypropyltransferase n=2 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7VBB6_IXOSC)

HSP 1 Score: 71.6 bits (174), Expect = 3.960e-10
Identity = 71/282 (25.18%), Postives = 99/282 (35.11%), Query Frame = 1
Query:  427 RRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRHDYSEQDLRKALGVEVAIDSSPERVSEISSERENSASTGTPLLLFPCPGADYLEDIAASRDQPAPSAQPFPPTPAXXXXXXXXXXXXXXXXXXXXXVVVLVDGTWSQAKQILSRYPSLLRSRMAATPAGQKTRELGASVGGVPVAAXXXXXXXXXXXXXXXXXXXXXXXSGGREAGPMEDGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQ 1272
            RR   +C CSSLP   +P S++  ILQHP E K+ +  T P++   L +   VV+R     ++   AL   +  D  P              S G  L+L+P P A+ LED+   R++                                   +VL+DGTWSQA+ +    P L R R                                                                V+      S Y  R +P +ECLST+E+VAY L VLE  PQ
Sbjct:   34 RRPPAVCWCSSLPETPVPVSSKVFILQHPGEVKRNLR-TAPMLEAALDSEHCVVLRGRRFSRERHGALNAMLDGDEGP--------------SLGDTLVLYPGPNAEPLEDLPTVRER------------------------------GRGYNLVLLDGTWSQARSLFHNSPHLHRLRQ---------------------------------------------------------------VQINPNRTSSYVIRTQPTRECLSTVETVAYALSVLEENPQ 207          
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Match: A0A5N6NCR0_9ASTR (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCR0_9ASTR)

HSP 1 Score: 68.6 bits (166), Expect = 1.420e-9
Identity = 55/176 (31.25%), Postives = 78/176 (44.32%), Query Frame = 1
Query:  406 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLANCTRVVMRHDYSEQDLRKALGVEVAIDSSPERVSEISSERENSASTGTPLLLFPCPGADYLEDIAASRDQPAPSAQPFPPTPAXXXXXXXXXXXXXXXXXXXXXVVVLVDGTWSQAKQILS 933
            R +C  C R   +CLC SLPAE + T+T+ VILQHP E + R+  TVP++  CL NC  ++ R        R  LG    +DS  +  S+ +  R   A+      LFP  G D           PAPS +                            V+++ DGTW  AK+++S
Sbjct:   18 RRICNACERPATVCLCDSLPAEPLSTTTQIVILQHPHEQRHRL-ATVPVLNKCLRNCQTLIGR--------RLRLGDSALLDSLHDAASDQNPPRSIQAA-----FLFP--GTD-----------PAPSME------------INRWLSSFGDTNMNKFVLIVFDGTWKHAKEMVS 154          
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Match: A0A6J0SH94_9SAUR (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SH94_9SAUR)

HSP 1 Score: 70.1 bits (170), Expect = 1.700e-9
Identity = 56/178 (31.46%), Postives = 79/178 (44.38%), Query Frame = 1
Query:  406 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLA-NCTRVVMRHDYSEQDLRKALGVEVAIDSSPERVSEISSERENSASTGTPLLLFPCPGADYLEDIAASRDQPAPSAQPFPPTPAXXXXXXXXXXXXXXXXXXXXXVVVLVDGTWSQAKQILSR 936
            R  C RC R +++CLC  LP   +  ST   I+QHPAE + RV  TVPL+  CL  +  +V++   +SE                 E   E++S   NS +    L+L+P  GA  LED+  S  +P                                 V++++DGTWSQAK I SR
Sbjct:   56 RPECGRCGRPQKVCLCPFLPVHPLNVSTCLYIIQHPAE-ENRVLRTVPLLAACLPEDKCKVLIGRRFSE-----------------EGYPELASVCRNSNT----LILYPGAGATNLEDVDLSTIEP--------------------------------YVIIIIDGTWSQAKDIFSR 179          
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Match: UPI001955E9FB (tRNA-uridine aminocarboxypropyltransferase 2 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955E9FB)

HSP 1 Score: 67.8 bits (164), Expect = 9.440e-9
Identity = 58/183 (31.69%), Postives = 80/183 (43.72%), Query Frame = 1
Query:  406 RDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAETKKRVTGTVPLVLHCLA--NCTRVVMRHDYSEQDLRKALGVEVAIDSSPERVSEISSERENSASTGTPLLLFPCPGADYLEDIAASRDQPAPSAQPFPPTPAXXXXXXXXXXXXXXXXXXXXXVVVLVDGTWSQAKQILSRYPSL 948
            R  C RC R  ++CLC  LPA  +  ST   I+QHPAE + RV  TVPL+  CLA   C RV +   +SE                 +R  ++++   +S+S    LLL+P   A+ LED++ S                                      V+L+DGTWSQAK +  R P L
Sbjct:   53 RPTCRRCCRPVKVCLCPYLPALPLDVSTSLYIVQHPAE-ESRVLRTVPLLAACLAPGKC-RVFVGRRFSE-----------------DRYPDLAAVCRDSSS----LLLYPGAAAESLEDLSFSS---------------------------------ATHSVILIDGTWSQAKDMFLRNPLL 179          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10491.774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT56_ECTSI3.470e-25394.49tRNA-uridine aminocarboxypropyltransferase n=2 Tax... [more]
L1J958_GUITC1.820e-1628.48tRNA-uridine aminocarboxypropyltransferase n=2 Tax... [more]
A0A836CLP8_9STRA5.280e-1459.49tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
R1BXS1_EMIHU7.850e-1428.40tRNA-uridine aminocarboxypropyltransferase n=2 Tax... [more]
A0A6P7V939_IXOSC1.560e-1325.95tRNA-uridine aminocarboxypropyltransferase n=3 Tax... [more]
A0A7S3RJQ7_EMIHU6.300e-1227.56tRNA-uridine aminocarboxypropyltransferase (Fragme... [more]
A0A6P7VBB6_IXOSC3.960e-1025.18tRNA-uridine aminocarboxypropyltransferase n=2 Tax... [more]
A0A5N6NCR0_9ASTR1.420e-931.25tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
A0A6J0SH94_9SAUR1.700e-931.46tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
UPI001955E9FB9.440e-931.69tRNA-uridine aminocarboxypropyltransferase 2 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10491contigEcto-sp8_S_contig10491:687..5055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score713.0
Seed ortholog evalue8.9e-203
Seed eggNOG ortholog2880.D7FT56
Model size1881
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.DTW
EggNOG OGsCOG3148@1,KOG4382@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003520.1
Cds size1359
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10491.774.1prot_Ecto-sp8_S_contig10491.774.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10491 756..4602 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143147.4747941-UTR-Ecto-sp8_S_contig10491:686..7551681143147.4747941-UTR-Ecto-sp8_S_contig10491:686..755Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10491 687..755 +
1681143147.5401704-UTR-Ecto-sp8_S_contig10491:4602..50551681143147.5401704-UTR-Ecto-sp8_S_contig10491:4602..5055Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10491 4603..5055 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143147.4937646-CDS-Ecto-sp8_S_contig10491:755..11271681143147.4937646-CDS-Ecto-sp8_S_contig10491:755..1127Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10491 756..1127 +
1681143147.5050545-CDS-Ecto-sp8_S_contig10491:1785..18711681143147.5050545-CDS-Ecto-sp8_S_contig10491:1785..1871Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10491 1786..1871 +
1681143147.5125413-CDS-Ecto-sp8_S_contig10491:2276..25051681143147.5125413-CDS-Ecto-sp8_S_contig10491:2276..2505Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10491 2277..2505 +
1681143147.5200317-CDS-Ecto-sp8_S_contig10491:3185..36801681143147.5200317-CDS-Ecto-sp8_S_contig10491:3185..3680Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10491 3186..3680 +
1681143147.5299795-CDS-Ecto-sp8_S_contig10491:4425..46021681143147.5299795-CDS-Ecto-sp8_S_contig10491:4425..4602Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10491 4426..4602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10491.774.1

>prot_Ecto-sp8_S_contig10491.774.1 ID=prot_Ecto-sp8_S_contig10491.774.1|Name=mRNA_Ecto-sp8_S_contig10491.774.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=453bp
MILVRLMLALAAQVVAVAGQKSGASERLRARSSSASALRVLLPPPGSADR
NSDALFCCPTTLTPFLAVGRRKPRRAACAAREIGNDAPSQAVQSYYERRR
EAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAE
TKKRVTGTVPLVLHCLANCTRVVMRHDYSEQDLRKALGVEVAIDSSPERV
SEISSERENSASTGTPLLLFPCPGADYLEDIAASRDQPAPSAQPFPPTPA
AAAAAAELATGGGGGGGGGGEVVVLVDGTWSQAKQILSRYPSLLRSRMAA
TPAGQKTRELGASVGGVPVAAVGGSGEAEGGGSSDERGDGSEEESGGREA
GPMEDGALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTP
QGLAAAAYLRKAFKAMVSMQLSRADTGGRRPRFVNRKERTTNRRSTPKKG
IL*
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mRNA from alignment at Ecto-sp8_S_contig10491:687..5055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10491.774.1 ID=mRNA_Ecto-sp8_S_contig10491.774.1|Name=mRNA_Ecto-sp8_S_contig10491.774.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4369bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10491:687..5055+ (Ectocarpus species8 EcLAC_412)
CCTGCATACTGCGATGTGCATGCCGTTTGCGTGCGTGTGCGTGCAAGAAA GTGGCCCGTTGATTGAAGGATGATCTTGGTCCGGTTGATGCTGGCGCTTG CCGCCCAGGTCGTAGCGGTAGCGGGACAGAAGAGCGGTGCATCTGAGCGC CTCCGGGCCCGTTCTTCATCAGCATCTGCGCTGCGGGTATTGTTGCCGCC GCCTGGCTCTGCTGACAGAAACTCAGATGCCTTGTTCTGCTGCCCGACGA CCCTTACTCCTTTCTTGGCCGTGGGGCGAAGAAAACCTCGCCGGGCGGCT TGCGCAGCCAGAGAGATCGGTAATGATGCACCATCACAGGCCGTTCAGTC GTACTACGAGCGGAGGCGGGAGGCCATGGGCGCGTGGACGGAGGAGAGGC GAGGCAGGGACCTGTGCGAGCGGTGTCGGAGGGCTCGAGAGGTCAGCAAT CGCTCTTTGTGTGCAACGCTAGGCGTTCCTTCGGTCTACCACTGCTGTTT CTCCACTGGAGGTGTGCTGCGGTAACCTACGCTGCTACTCTGCAATTACG TAGTTGCGCCGCTTTTTTTCTGAGGCGTGTTGACGGCTGCTCCCGAGAGC AAAAGTTCAGTCCCCTCGACTGCATACTTCCTTGATGGCAATCGAGCGCC ACTTTTCGCCTCATTTTTCTCCATTAGCCATACAGCGTTGTGAGCATGGT AGTGTTCTACACAGTGCGGGCCCGCTCAAGAACATGTCCTCAATACATCG AAGCTCAGATTCACGAAAGAAATAGGAGTAACGGCGCAAGACGCTGGTGT GGTAGCTTAGCAATAGCCCTTCCTCAGCCGTTGAGAAAATGGAAGGCTTT GAGCCTTACTCACAATAGGTATTGCTCACGAGCGGACCGGCACTGCTGAA AGCGTTTTTGGACAACCCCCGGTTCCAAGTCTTGTTGCCGTTGGATTGCT CTTGTCGGGTTGCTCGCCGTCACGTTCATCCTACAGTTAACCTACAACAG TCGCTGTAGTAGCGTGTCCAGAGGTGACCAATTCCTTTGTCTGCACCCCA ACTCTGCCCGCATCACCTTTTCCCTCTGCCCGTTTGTCGATCGTGACAGA TGTGCCTGTGCTCTTCCTTGCCGGCTGAAGCCATGCCAACGTCTACTCGG TTCGTAATATTGCAACATCCAGCGGAAACTAAGAAGTGAGTTCGTCACGG TCTAGCGTTGTTGTTGATCCCAGTACTCGGAGAACGCGCATCACCACCCC GCACAGCTCATCAGGCAGGGAAAAAGGGGTTGTACACACGCCACCTAGTG CCTTCAGTGTACACTAGCCAATATCGCCCTTCACTGCACGTTTCTCCTGG TGCACCGTCTGTGTTCGAAGATCGATTTCCGAGGGAGGCTCGCACTTTCA ACAGGCGCCGTTTTAGACACAGCGATTTTGCTTCCATAGTTTCCAAATTT CCAAATCCGTAGAACGTTGGACCTCAATTTTGCGGCTGAGGAAAAAAATT GGGAATTTGGAGGATTTGGAAGCAAAACGCTGTGCATAAAACGCGGCCCA AACCGATGTTTTCCGTCATTTCCCCCCTTTTCTTCATCAGGCGTGTCACC GGGACCGTTCCTCTGGTCCTCCACTGCCTCGCCAACTGCACCCGCGTGGT GATGCGGCACGACTACAGCGAGCAAGACCTCAGGAAAGCCCTCGGCGTCG AGGTGGCAATAGACAGTTCCCCGGAACGCGTCTCGGAAATTTCCTCGGAG CGGGAAAACAGCGCCAGCACAGGCACTCCGCTTCTTCTTTTTCCCTGCCC CGGCGCGGATTACCTTGAGGTGAAGTGGTGGCAGACGTTAACGTTAGACC GTAATTGTTGTGATTTCCGCTGTGATGGGCGAATGGTGCGTCTTTCCGAA CGGTTTTGTTCTTTGTCGTTTCCTGGAAAATATGGTCTTCTGTTTCATTA TATCCCCTTGGGAACATTTTCGTTTTGTCCCAGGACAGCATGCGGGGCGG GTGGGTGAGTGGAAACCGTGTATCTTGCGCCGAGCGTCCGGCGTCTTGTC ATTTTCGTTCCAAAGGGAGACCTGTCCACGAGATACAGCAGGAGAGGCGG ACAGACAAAACGAGAGCGTGTCCAATCGACAACGTTGGGAAGCAGGGCAC ATCCTCCCTCGAAGAATGTTTCTCGAGCACGCGGAAAGTTTTGCCATGCT CGTGTCGCATTGCCGACCTGTGGGTGGGACTGTCATTTTCTCTCGTGCCC AATTTGTTTTCTGATAGTATCTGTGGCCACAAACAGTCGTCGTCGTTAGT GTTGTGGAGAACCGGGTATTGTTGTAGATGTTTCGCTTCTGGTTCACGTT AAACTGGGGCAATAGGAAGAACACTTGTCAGCAATACTCAGCGCCCTTGT TCGAAACGCTTGTAATTGCTAAAAGGTGTGTATCAACAATTCCACCTAGT CGCACATATCAATATTTCCCCCTCTCTCTTCATGACACACGGTGGACAGG ACATCGCCGCTTCCCGAGACCAACCTGCCCCGTCGGCACAGCCCTTCCCA CCAACACCAGCGGCAGCCGCAGCAGCGGCAGAACTAGCAACAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGAGGTAGTGGTGCTCGTCGACGGCACCT GGTCGCAGGCGAAGCAGATCTTGTCCAGGTACCCCTCCCTCCTCCGCTCG AGAATGGCAGCCACGCCCGCCGGACAGAAGACTAGGGAATTGGGTGCCTC CGTTGGTGGCGTTCCCGTCGCCGCCGTTGGGGGTTCAGGAGAGGCCGAGG GCGGTGGTAGTAGTGATGAGAGAGGGGACGGGAGTGAGGAAGAGTCGGGG GGGAGGGAGGCGGGGCCAATGGAGGACGGAGCGTTGTGCAGGGCGGTGAA GTTTCGGTGCGCGGGAGTCAGCGGCTACGGCTTCAGGCGGGAGCCGGCGA AAGAATGCCTGTCCACCTTGGAAAGCGTTGCTTACACGCTGGAGGTATGT TTTCCCGGGCGGCGTCACGAAACAATGCGCGACCGTGGCTTCGCACGTGT CTCTTCTTTTTTTATCTTCCGTCAGCGAACCAGCGCCTATCAACTGGCCG AGGAAGCGCTTCAGTCGCAACGCGTTCACGAAAAATCTTGCTCTTGTGCT TGTGCTTGCGCCTCGTCCCTGGCCCGGCCTTGCTGGTGTGCTAAATGCAT GCGGTTCACCGATTGGCGTATCACCGATTGAGATGTTGAAATTCTCAGAC GTCTCCGCAGTTGAGGCGTACTCCCCCTGTCTCCCGCCAGCAGCACCGGG GTAGAAATGAATGGGACGATAAATCCAACGGCTAAACTTGTAGCTCCTCA CGCATTGTGACGACGGCTGTAGCTTTATTTTCGCACAGCTGCACTTACTC TTCCTACTGAACGCTTTTTTTATCACTGATTTTGGAACAAATGCATCGTC CACGTTGCCCTGAGGCGGACTTCGTACATGCTTGAGATGATGCGCATCGC TCTGGAGAGTCATGACCATGTTTCATTCCTACAACATGGCCAACTGCTGC AAAGCTAGCGAATCAGTTTCTCATCCATTCTCACCATCGTCGAGGAGGAT GGGGGCGTGCGATAGTTTAAAGCTATCGAGGCTCCTGATATGTTAAACTC CCCGCGCATATATGGTATGTGCGAAACTGAGTTGGAGCAAATTAATTGGG TGCAAATTCTCATCCATTCCACGGGCGTGCGACGTGCAGGTACTGGAGGG GACCCCGCAAGGGCTGGCGGCAGCGGCCTACCTCCGCAAGGCATTCAAGG CGATGGTATCGATGCAGCTATCTCGGGCCGACACGGGGGGCCGCCGGCCC CGATTTGTGAACCGAAAGGAGAGAACGACGAACCGGAGGTCGACACCCAA GAAGGGAATTCTTTGAGGCTCGGGCATCTCATTGACCTCCTGTAGTAGCT ACATCATACACGGTAGCTCTGCGAAGTCTGTGTGGTTTCCTCTGTCATGT GTTAGTCTCGCCGCTACAACTACGCGCTCTGTTGCTCGGAATGGGATGTG AACTACAGCTGCAATGTATGTACACGTTGGCCAGGGAGGGGGGCGACGCG AGAGAAATATATCTCAACAACAGCTGGTATGTTGGAGGCACACCATTCTC TATCTGGTACGCCCAAAGTGTATTGGAAAAGGGGTAGACCCAACCAGGCC TCACGGACGAGGGATGTTGGCTGTAAAGTAGGCGTGAGTCGTCACAAGAC AGGAAATTCAGGCAGACAGCGGACAAACAAACCATTCGGGACATGCCTGG TATATATTGGAATGACAGGGGAAAAATGAGCTTGCAGGTGCATACGTAGG TAATAGAATCATCTACCGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10491:687..5055+

>mRNA_Ecto-sp8_S_contig10491.774.1 ID=mRNA_Ecto-sp8_S_contig10491.774.1|Name=mRNA_Ecto-sp8_S_contig10491.774.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1359bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10491:687..5055+ (Ectocarpus species8 EcLAC_412)
ATGATCTTGGTCCGGTTGATGCTGGCGCTTGCCGCCCAGGTCGTAGCGGT
AGCGGGACAGAAGAGCGGTGCATCTGAGCGCCTCCGGGCCCGTTCTTCAT
CAGCATCTGCGCTGCGGGTATTGTTGCCGCCGCCTGGCTCTGCTGACAGA
AACTCAGATGCCTTGTTCTGCTGCCCGACGACCCTTACTCCTTTCTTGGC
CGTGGGGCGAAGAAAACCTCGCCGGGCGGCTTGCGCAGCCAGAGAGATCG
GTAATGATGCACCATCACAGGCCGTTCAGTCGTACTACGAGCGGAGGCGG
GAGGCCATGGGCGCGTGGACGGAGGAGAGGCGAGGCAGGGACCTGTGCGA
GCGGTGTCGGAGGGCTCGAGAGATGTGCCTGTGCTCTTCCTTGCCGGCTG
AAGCCATGCCAACGTCTACTCGGTTCGTAATATTGCAACATCCAGCGGAA
ACTAAGAAGCGTGTCACCGGGACCGTTCCTCTGGTCCTCCACTGCCTCGC
CAACTGCACCCGCGTGGTGATGCGGCACGACTACAGCGAGCAAGACCTCA
GGAAAGCCCTCGGCGTCGAGGTGGCAATAGACAGTTCCCCGGAACGCGTC
TCGGAAATTTCCTCGGAGCGGGAAAACAGCGCCAGCACAGGCACTCCGCT
TCTTCTTTTTCCCTGCCCCGGCGCGGATTACCTTGAGGACATCGCCGCTT
CCCGAGACCAACCTGCCCCGTCGGCACAGCCCTTCCCACCAACACCAGCG
GCAGCCGCAGCAGCGGCAGAACTAGCAACAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAGGTAGTGGTGCTCGTCGACGGCACCTGGTCGCAGGCGA
AGCAGATCTTGTCCAGGTACCCCTCCCTCCTCCGCTCGAGAATGGCAGCC
ACGCCCGCCGGACAGAAGACTAGGGAATTGGGTGCCTCCGTTGGTGGCGT
TCCCGTCGCCGCCGTTGGGGGTTCAGGAGAGGCCGAGGGCGGTGGTAGTA
GTGATGAGAGAGGGGACGGGAGTGAGGAAGAGTCGGGGGGGAGGGAGGCG
GGGCCAATGGAGGACGGAGCGTTGTGCAGGGCGGTGAAGTTTCGGTGCGC
GGGAGTCAGCGGCTACGGCTTCAGGCGGGAGCCGGCGAAAGAATGCCTGT
CCACCTTGGAAAGCGTTGCTTACACGCTGGAGGTACTGGAGGGGACCCCG
CAAGGGCTGGCGGCAGCGGCCTACCTCCGCAAGGCATTCAAGGCGATGGT
ATCGATGCAGCTATCTCGGGCCGACACGGGGGGCCGCCGGCCCCGATTTG
TGAACCGAAAGGAGAGAACGACGAACCGGAGGTCGACACCCAAGAAGGGA
ATTCTTTGA
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