mRNA_Ecto-sp8_S_contig1049.773.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1049.773.1
Unique NamemRNA_Ecto-sp8_S_contig1049.773.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1049.773.1 vs. uniprot
Match: D8LB23_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB23_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 7.530e-72
Identity = 217/223 (97.31%), Postives = 218/223 (97.76%), Query Frame = 1 
Query:    1 FEEAKEATLESKAALSQQRTDLAALQSEFRESSRREEQAMAKIKELGDAAESIGARALRNRKSVEESKVAARREAGAIDAAARQESRLAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAEAVAAAEKGEDPETIGEMAPEHRAFESISSSTVDAAGGGEHAPEDPAAGEPGVETLASSGTAVVPDPR 669
            FEEAKEATLESKAALSQQRTDLAALQ EFRESSRREEQAMAKIKELGDAAESIGARALRNRKS EESKVAARREAGAIDAAARQESRLAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AVAAAEKGE+PETIGEMAPEHRAFESISSSTVDAAGGGEHAPEDPAAGEPGVETLASSGTAVVPDPR
Sbjct:  436 FEEAKEATLESKAALSQQRTDLAALQREFRESSRREEQAMAKIKELGDAAESIGARALRNRKSAEESKVAARREAGAIDAAARQESRLAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAAAEKGENPETIGEMAPEHRAFESISSSTVDAAGGGEHAPEDPAAGEPGVETLASSGTAVVPDPR 658
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BLAST of mRNA_Ecto-sp8_S_contig1049.773.1 vs. uniprot
Match: A0A6H5JDB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB8_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.750e-57
Identity = 180/223 (80.72%), Postives = 185/223 (82.96%), Query Frame = 1 
Query:    1 FEEAKEATLESKAALSQQRTDLAALQSEFRESSRREEQAMAKIKELGDAAESIGARALRNRKSVEESKVAARREAGAIDAAARQESRLAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAEAVAAAEKGEDPETIGEMAPEHRAFESISSSTVDAAGGGEHAPEDPAAGEPGVETLASSGTAVVPDPR 669
            F EAKEATL SKAALSQQRTDLAALQ EFRE SRREE+AMAKIKELGDAAES GARALRNRKS EESKVAARREAGAIDAAARQESRLAAEA    XXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  E   AAE   DPE IGEMAP+++AF SISSS  DAAGG EHA EDP A EPGVETLA  GTA VP+PR
Sbjct:   11 FAEAKEATLASKAALSQQRTDLAALQKEFRERSRREEEAMAKIKELGDAAESFGARALRNRKSAEESKVAARREAGAIDAAARQESRLAAEAVAAKXXXXXXXXXXQEEKAKRDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEXXXAAETSGDPEAIGEMAPDYQAFGSISSSAADAAGGAEHALEDPTAEEPGVETLALPGTAAVPEPR 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1049.773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB23_ECTSI7.530e-7297.31Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A6H5JDB8_9PHAE1.750e-5780.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1049contigEcto-sp8_S_contig1049:16294..17473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score246.9
Seed ortholog evalue8.9e-63
Seed eggNOG ortholog2880.D8LB23
Model size672
KEGG koko:K09537
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.toxin transport
EggNOG OGsCOG2214@1,KOG0691@2759
Cds size672
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143147.4317155-CDS-Ecto-sp8_S_contig1049:16293..168301681143147.4317155-CDS-Ecto-sp8_S_contig1049:16293..16830Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1049 16294..16830 -
1681143147.4421513-CDS-Ecto-sp8_S_contig1049:17338..174731681143147.4421513-CDS-Ecto-sp8_S_contig1049:17338..17473Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1049 17339..17473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1049.773.1prot_Ecto-sp8_S_contig1049.773.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1049 16294..17473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1049.773.1

>prot_Ecto-sp8_S_contig1049.773.1 ID=prot_Ecto-sp8_S_contig1049.773.1|Name=mRNA_Ecto-sp8_S_contig1049.773.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=224bp
FEEAKEATLESKAALSQQRTDLAALQSEFRESSRREEQAMAKIKELGDAA
ESIGARALRNRKSVEESKVAARREAGAIDAAARQESRLAAEAVAAKAELE
AAAAAAQEEKAKRDRAEAARAAAEAVERARLAEQAAGAAAEAAIKAATAA
RQATAEAVAAAEKGEDPETIGEMAPEHRAFESISSSTVDAAGGGEHAPED
PAAGEPGVETLASSGTAVVPDPR*
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mRNA from alignment at Ecto-sp8_S_contig1049:16294..17473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1049.773.1 ID=mRNA_Ecto-sp8_S_contig1049.773.1|Name=mRNA_Ecto-sp8_S_contig1049.773.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1180bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1049:16294..17473- (Ectocarpus species8 EcLAC_412)
TTTGAGGAGGCGAAGGAGGCCACCCTAGAGAGCAAGGCGGCCTTGTCGCA
GCAGCGGACGGACCTCGCGGCGCTCCAGAGCGAGTTCCGGGAGAGCAGCA
GGCGGGAGGAGCAAGCCATGGCCAAGATCAAGGAGGTGCTAACATGTTGA
CAAGAGTTGTTGGATGTTCGGGTTTAGGCTTGAAGGCTCGCGATTGGCGG
CCGCCCCCTTCCCCCCGATTGAGAACGTTCCATTGAAAGTAGACAACCAC
AGAAAGACTAACACCCGTTCGTGATGTTGCCCCATTCGATGGGGTGTGTT
TTTTAAGTCTTGACGGCAGTGAGTGAGGAGTTTTTTTTTTTTGCTAGGTG
GAAAGGGGTTCCCATCGGTGTCAAGAGGGTTGCCATTCGTTCACGGAATC
ATCGGGAGTTACCCTGGGATGGCCACGATTCCGTTCCCGCTAAAGCATAC
CACTCACCTACATTCCCCCCACCGACCTCACCAAAGCCCCCCCCACCGGC
CGGGAGGTTCGCACAGTCAACAGCATTGGGTTTTTACCACGCGGGGAGCA
CCGGCATTGGAATTCCACGCCCAAATAACTGGCGACCTTGTATTGATGTC
TTTCTCCCCTCCGTTGCTGCCGCTGACCCCCTCCCCTTCCCAGCTCGGCG
ATGCGGCGGAGTCCATCGGCGCCCGCGCCCTCCGCAACCGGAAGTCCGTC
GAGGAGAGCAAGGTGGCCGCTCGGCGGGAGGCCGGGGCGATCGACGCCGC
CGCCCGGCAGGAGTCTCGCCTCGCCGCGGAAGCCGTTGCCGCGAAGGCGG
AGCTTGAGGCCGCCGCCGCCGCAGCTCAGGAGGAGAAGGCTAAGCGCGAC
CGGGCGGAGGCGGCGAGGGCGGCGGCGGAAGCCGTGGAGCGGGCGCGGCT
GGCGGAGCAGGCGGCGGGGGCGGCGGCGGAGGCGGCCATCAAGGCGGCGA
CGGCGGCGAGACAGGCGACCGCGGAGGCGGTGGCGGCGGCGGAGAAGGGT
GAGGATCCGGAGACGATCGGCGAGATGGCACCTGAACACAGGGCCTTTGA
ATCCATATCTTCTTCGACGGTGGATGCGGCAGGGGGTGGAGAGCACGCTC
CGGAGGATCCTGCGGCAGGAGAGCCCGGGGTGGAAACCTTGGCGTCGTCG
GGGACAGCGGTGGTGCCTGATCCGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1049:16294..17473-

>mRNA_Ecto-sp8_S_contig1049.773.1 ID=mRNA_Ecto-sp8_S_contig1049.773.1|Name=mRNA_Ecto-sp8_S_contig1049.773.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1049:16294..17473- (Ectocarpus species8 EcLAC_412)
TTTGAGGAGGCGAAGGAGGCCACCCTAGAGAGCAAGGCGGCCTTGTCGCA
GCAGCGGACGGACCTCGCGGCGCTCCAGAGCGAGTTCCGGGAGAGCAGCA
GGCGGGAGGAGCAAGCCATGGCCAAGATCAAGGAGCTCGGCGATGCGGCG
GAGTCCATCGGCGCCCGCGCCCTCCGCAACCGGAAGTCCGTCGAGGAGAG
CAAGGTGGCCGCTCGGCGGGAGGCCGGGGCGATCGACGCCGCCGCCCGGC
AGGAGTCTCGCCTCGCCGCGGAAGCCGTTGCCGCGAAGGCGGAGCTTGAG
GCCGCCGCCGCCGCAGCTCAGGAGGAGAAGGCTAAGCGCGACCGGGCGGA
GGCGGCGAGGGCGGCGGCGGAAGCCGTGGAGCGGGCGCGGCTGGCGGAGC
AGGCGGCGGGGGCGGCGGCGGAGGCGGCCATCAAGGCGGCGACGGCGGCG
AGACAGGCGACCGCGGAGGCGGTGGCGGCGGCGGAGAAGGGTGAGGATCC
GGAGACGATCGGCGAGATGGCACCTGAACACAGGGCCTTTGAATCCATAT
CTTCTTCGACGGTGGATGCGGCAGGGGGTGGAGAGCACGCTCCGGAGGAT
CCTGCGGCAGGAGAGCCCGGGGTGGAAACCTTGGCGTCGTCGGGGACAGC
GGTGGTGCCTGATCCGCGGTGA
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